Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

74830212 .. 74834093

Gene Structure 3882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG567300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACAAACAGTACAGCAACCAAAACAAAATGTCTACTTTTGACACGTATCCCTGACGTAGCCCCCCCTCCATGTTCGACAAGTAGAGCTCACACTCTCTCTAAGACACGCCGCCTTCTCACTTCCCTCTCTCCCTTTTGTGCCTGTCAGGTTGAAACAGTCAGATTGTTCTTCTTCCTCGTCACAATGATACCTCTGGTGTTTGGTTCTTCACTGCCCTCACCGACACCGCCAGAGGCAGTAGAGACGCCGGCTACAAAGAAATGTGGGAGCTTAGCGGGTCCCCGGATCTTCCCAAATGGAAGCCGTTCGGGTTCCGGTAACGGGTTCCCGCCGTTTCTTCCCAAAGAGGTTGAGAAGATCCGAGACCCTTATGCCAGAAACTTGGCTCAAAGAATGGAGAGGCTCCCTGTGCAGATGGGGTTATATGAAAGTTGTATAATGAGTAGTTGTGTGAAACCTCTAGTACAAACCAAGAACAATCCAGTGGTTCTTCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCACATATCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGCGATTGATGTGCTCGGGTGGGGCTTCTCCGATTTAGAAAGGCTTCCACCATGCAATCAGGAATCAAAGCGTCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCGATGATATTAGTTGGACCAAGCCTCGGTGCTTCTGTTGCAATTGACTTTGCAGTTAGTTATCCGTTTGCTGTTGAAAAGCTGGTTTTGATTAATGCAAGTGTGTACGCAGAAGGCACCAAAGGCCTTGCAGAATTTCCTAGAGTATTAGCCTATGCTGGGGTAAGTGTCCACATACGATTTAGTGGAAGAATATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

295

Amino Acids

32.63

Weight (kDa)

9.1

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	161 - 261	1.7e-06	alpha/beta hydrolase fold
Hydrolase_4	PF12146	163 - 266	1.3e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	163 - 284	5.1e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	4 cut(s)	112, 230, 278, 332
AclWI	GGATC	2 cut(s)	296, 355
AcsI	RAATTY	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	3 cut(s)	13, 468, 791
AfiI	CCNNNNNNNGG	3 cut(s)	324, 710, 843
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	155, 551, 761
AluBI	AGCT	3 cut(s)	89, 273, 766
AluI	AGCT	3 cut(s)	89, 273, 766
Alw21I	GWGCWC	3 cut(s)	91, 536, 588
Alw26I	GTCTC	2 cut(s)	239, 360
Alw44I	GTGCAC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	296, 355
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	555, 683, 808
ApaLI	GTGCAC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	818
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	2 cut(s)	307, 615
AspS9I	GGNCC	2 cut(s)	281, 701
AsuC2I	CCSGG	2 cut(s)	286, 559
AsuHPI	GGTGA	2 cut(s)	213, 641
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	281, 701
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	3 cut(s)	91, 536, 588
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	2 cut(s)	291, 319
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BciVI	GTATCC	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	286, 559
BcoDI	GTCTC	2 cut(s)	239, 360
BfaI	CTAG	2 cut(s)	464, 825
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	112
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	286, 559
Bme18I	GGWCC	2 cut(s)	281, 701
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	281, 701
BmiI	GGNNCC	6 cut(s)	282, 283, 316, 329, 407, 802
BmrFI	CCNGG	2 cut(s)	286, 559
Bpu1102I	GCTNAGC	1 cut(s)	274
BpuMI	CCSGG	2 cut(s)	286, 559
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	284, 709
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 710, 843
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	284, 709
BseLI	CCNNNNNNNGG	3 cut(s)	324, 710, 843
BseMI	GCAATG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	557, 685, 810
BshNI	GGYRCC	1 cut(s)	800
BsiHKAI	GWGCWC	3 cut(s)	91, 536, 588
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	4 cut(s)	251, 286, 318, 558
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	324, 710, 843
BsmAI	GTCTC	2 cut(s)	239, 360
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	557, 685, 810
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	3 cut(s)	91, 536, 588
Bsp143I	GATC	2 cut(s)	288, 360
Bsp1720I	GCTNAGC	1 cut(s)	274
BspACI	CCGC	4 cut(s)	112, 230, 278, 332
BspANI	GGCC	3 cut(s)	557, 685, 810
BspLI	GGNNCC	6 cut(s)	282, 283, 316, 329, 407, 802
BspPI	GGATC	2 cut(s)	296, 355
BspT107I	GGYRCC	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	284, 709
BssMI	GATC	2 cut(s)	288, 360
BssNI	GRCGYC	1 cut(s)	248
Bst4CI	ACNGT	3 cut(s)	11, 160, 512
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	102, 274
BstKTI	GATC	2 cut(s)	291, 363
BstMAI	GTCTC	2 cut(s)	239, 360
BstMBI	GATC	2 cut(s)	288, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 722, 807
BstSCI	CCNGG	2 cut(s)	284, 557
BstSLI	GKGCMC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	288, 360
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	2 cut(s)	288, 360
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	557, 685, 810
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 492
Cac8I	GCNNGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	281, 701
CseI	GACGC	2 cut(s)	256, 632
Csp6I	GTAC	3 cut(s)	12, 467, 790
CviAII	CATG	2 cut(s)	72, 624
CviQI	GTAC	3 cut(s)	12, 467, 790
DdeI	CTNAG	2 cut(s)	102, 274
DpnI	GATC	2 cut(s)	290, 362
DpnII	GATC	2 cut(s)	288, 360
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	281, 701
Eco53kI	GAGCTC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	75, 627
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	71, 623
FauI	CCCGC	2 cut(s)	271, 339
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	464, 825
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	3 cut(s)	557, 685, 810
HapII	CCGG	4 cut(s)	251, 286, 318, 558
HgaI	GACGC	2 cut(s)	256, 632
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	75, 627
HinfI	GANTC	1 cut(s)	635
HpaII	CCGG	4 cut(s)	251, 286, 318, 558
HphI	GGTGA	2 cut(s)	213, 641
Hpy166II	GTNNAC	4 cut(s)	35, 534, 790, 856
Hpy188I	TCNGA	4 cut(s)	164, 365, 604, 680
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	4 cut(s)	35, 534, 790, 856
HpyAV	CCTTC	3 cut(s)	125, 675, 791
HpyCH4III	ACNGT	3 cut(s)	11, 160, 512
HpyCH4IV	ACGT	2 cut(s)	46, 57
HpyCH4V	TGCA	7 cut(s)	415, 534, 627, 725, 737, 782, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 722, 807
HpyF3I	CTNAG	2 cut(s)	102, 274
HpySE526I	ACGT	2 cut(s)	46, 57
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	75, 627
KflI	GGGWCCC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	288, 360
LmnI	GCTCC	2 cut(s)	270, 411
MaeI	CTAG	2 cut(s)	464, 825
MaeII	ACGT	2 cut(s)	46, 57
MaeIII	GTNAC	2 cut(s)	181, 320
MalI	GATC	2 cut(s)	290, 362
MboI	GATC	2 cut(s)	288, 360
MboII	GAAGA	9 cut(s)	163, 166, 201, 283, 332, 370, 485, 563, 885
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	2 cut(s)	288, 360
MhlI	GDGCHC	3 cut(s)	91, 536, 588
MluCI	AATT	2 cut(s)	726, 818
MmeI	TCCRAC	2 cut(s)	543, 679
MroNI	GCCGGC	1 cut(s)	250
MroXI	GAANNNNTTC	2 cut(s)	307, 615
MseI	TTAA	1 cut(s)	777
MspI	CCGG	4 cut(s)	251, 286, 318, 558
MspR9I	CCNGG	2 cut(s)	286, 559
MunI	CAATTG	1 cut(s)	726
MwoI	GCNNNNNNNGC	3 cut(s)	412, 722, 807
NaeI	GCCGGC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	286, 559
NdeII	GATC	2 cut(s)	288, 360
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	75, 627
NlaIV	GGNNCC	6 cut(s)	282, 283, 316, 329, 407, 802
NmuCI	GTSAC	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	810
PdiI	GCCGGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	307, 615
PfeI	GAWTC	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	842
PspN4I	GGNNCC	6 cut(s)	282, 283, 316, 329, 407, 802
PspPI	GGNCC	2 cut(s)	281, 701
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	288, 360
RsaI	GTAC	3 cut(s)	13, 468, 791
RsaNI	GTAC	3 cut(s)	12, 467, 790
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	288, 360
Sau96I	GGNCC	2 cut(s)	281, 701
ScrFI	CCNGG	2 cut(s)	286, 559
SduI	GDGCHC	3 cut(s)	91, 536, 588
SinI	GGWCC	2 cut(s)	281, 701
Sse9I	AATT	2 cut(s)	726, 818
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	4 cut(s)	112, 230, 278, 332
SspMI	CTAG	2 cut(s)	464, 825
SstI	GAGCTC	1 cut(s)	91
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	284, 557
TaaI	ACNGT	3 cut(s)	11, 160, 512
TaiI	ACGT	2 cut(s)	49, 60
TaqI	TCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	726, 818
TatI	WGTACW	2 cut(s)	11, 466
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	2 cut(s)	219, 492
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	219, 492
VneI	GTGCAC	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	281, 701
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	307, 615
XspI	CTAG	2 cut(s)	464, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.