Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

84066822 .. 84073857

Gene Structure 7036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG606300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGATACCTCTGGTGTTTGGTTCTTCACTGCCCTCACCAACACCGCCAGAGGCAGTAGAGACGCCGGCTACAAAGAAATGTGGGAGCTTAACGGGTCCCCGGATCTTCCCAAATGGGAGCCGTTCGGGTTCCGGTAACGGGTTCCCGCCGTTTCTTCCCAAAGAGGTTGAGAAGGTCAGAGACCCTTATGCCAGAAACTTGGCTCAAAGAATGGAGAGGCTCCCTGTGCAGATGGGGTTATATGAAAGTTGTATAATGAGTAGTTGTGTGAAACCTCTAGTACAAACCAAGAACAATCCAGTGGTTCTTCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCACATATCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGCGATTGATGTGCTCGGGTGGGGCTTCTCCGATTTAGAAAGGCTTCCACCATGCAATACGGAATCAAAGCGTCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCGATGATATTAGTTGGTCCAAGCCTCGGTGCTTCTGTTGCAATTGACTTTGCAGTTAGTTATCCGTTTGCTGTTGAAAAGCTGGTTTTGATTAATGCAAGTGTGTATGCAGAAGGCACCAAAGGCCTTGCAGAATTACCTAGAGTATTAGCCTATGCTGGGGTTTCCTTGTTGAGGAGCATCCCTCTACGGCTTTACGCTAATATGCTGGCCTTCAATGACATTTCATTAGCTACAACCTTTGATTGGACGAATGTCGGCCGCTTACACTGTTTGCTGCCTTGGTGGAAAGATGCAACAGTAAGTTTCATGAGTAGTGGGGGCTACAATGTTATTGCGCAAATAAAACAGGTAAAGCAGAAAGCACTTGTCATCTGTAGTGAGAAAGATCGGATTATCAACTACAAGCAAACACTGCCTCCTCCATGTTCGACAAGTAGAGCTCAGACTCTCTCTAAGACAAGCTGCCTTCTCACTTCCCTCTTTCCCTTTTGTGCCTGTCCGGTTGAAACAGAGCGCACTCTCTCAGTTTTGGCCGTCAGATTGTTCTTCTTCGATCTTCTTCGTCGTCAGAATGATACCTCTGGTGTTTGGTTCTTCACTGCCCTCACCAACACCACCAGAGGCAGTAGAGACGCCGGCTACAAAGAAATGTGGGAGCTTAGCGGGTCCCCGGATCTTCCCAAATGGAAGCCGTTCGGGTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

402

Amino Acids

44.9

Weight (kDa)

9.04

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	99 - 199	1.3e-06	alpha/beta hydrolase fold
Hydrolase_4	PF12146	101 - 302	2e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	101 - 302	1.1e-07	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	4 cut(s)	44, 146, 760, 1164
AclWI	GGATC	2 cut(s)	110, 1182
AcoI	YGGCCR	2 cut(s)	757, 1032
AcyI	GRCGYC	2 cut(s)	62, 1134
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 672, 744
AgsI	TTSAA	4 cut(s)	365, 575, 715, 1007
AluBI	AGCT	6 cut(s)	87, 580, 731, 941, 963, 1159
AluI	AGCT	6 cut(s)	87, 580, 731, 941, 963, 1159
Alw21I	GWGCWC	3 cut(s)	350, 402, 943
Alw26I	GTCTC	3 cut(s)	53, 174, 1125
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	2 cut(s)	110, 1182
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	6 cut(s)	369, 497, 622, 708, 757, 1032
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	775, 963
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	429, 1193
AspLEI	GCGC	2 cut(s)	838, 1017
AspS9I	GGNCC	3 cut(s)	95, 515, 1167
AsuC2I	CCSGG	3 cut(s)	100, 373, 1172
AsuHPI	GGTGA	3 cut(s)	27, 455, 1099
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	3 cut(s)	95, 515, 1167
BaeGI	GKGCMC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	943
Bbv12I	GWGCWC	3 cut(s)	350, 402, 943
BbvI	GCAGC	2 cut(s)	762, 950
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	5 cut(s)	105, 133, 704, 1019, 1177
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	3 cut(s)	100, 373, 1172
BcoDI	GTCTC	3 cut(s)	53, 174, 1125
BfaI	CTAG	2 cut(s)	278, 639
BfmI	CTRYAG	1 cut(s)	874
BisI	GCNGC	3 cut(s)	760, 776, 964
BlpI	GCTNAGC	1 cut(s)	1160
BlsI	GCNGC	3 cut(s)	761, 777, 965
Bme1390I	CCNGG	3 cut(s)	100, 373, 1172
Bme18I	GGWCC	3 cut(s)	95, 515, 1167
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	95, 515, 1167
BmrFI	CCNGG	3 cut(s)	100, 373, 1172
BmsI	GCATC	2 cut(s)	687, 781
BoxI	GACNNNNGTC	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
Bpu1102I	GCTNAGC	1 cut(s)	1160
BpuMI	CCSGG	3 cut(s)	100, 373, 1172
BsaHI	GRCGYC	2 cut(s)	62, 1134
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	98, 523, 779, 1170
BsaWI	WCCGGW	3 cut(s)	131, 1000, 1203
BsaXI	ACNNNNNCTCC	2 cut(s)	901, 931
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 672, 744
Bse118I	RCCGGY	2 cut(s)	64, 1136
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	4 cut(s)	98, 523, 779, 1170
BseGI	GGATG	1 cut(s)	678
BseLI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 672, 744
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	956, 1038
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	2 cut(s)	688, 909
BseSI	GKGCMC	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	762, 950
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	6 cut(s)	371, 499, 624, 710, 759, 1034
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	3 cut(s)	350, 402, 943
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	8 cut(s)	65, 100, 132, 372, 1001, 1137, 1172, 1204
BslFI	GGGAC	2 cut(s)	81, 1153
BslI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 672, 744
BsmAI	GTCTC	3 cut(s)	53, 174, 1125
BsmBI	CGTCTC	2 cut(s)	53, 1125
BsmFI	GGGAC	2 cut(s)	81, 1153
BsnI	GGCC	6 cut(s)	371, 499, 624, 710, 759, 1034
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	350, 402, 943
Bsp143I	GATC	4 cut(s)	102, 886, 1054, 1174
Bsp1720I	GCTNAGC	1 cut(s)	1160
BspACI	CCGC	4 cut(s)	44, 146, 760, 1164
BspANI	GGCC	6 cut(s)	371, 499, 624, 710, 759, 1034
BspCNI	CTCAG	2 cut(s)	955, 1037
BspHI	TCATGA	1 cut(s)	807
BspPI	GGATC	2 cut(s)	110, 1182
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	64, 1136
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	2 cut(s)	64, 1136
BssECI	CCNNGG	4 cut(s)	98, 523, 779, 1170
BssMI	GATC	4 cut(s)	102, 886, 1054, 1174
BssNI	GRCGYC	2 cut(s)	62, 1134
BssT1I	CCWWGG	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	326, 770, 799
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	62, 1134
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	66, 708, 1138
BstDEI	CTNAG	4 cut(s)	942, 954, 1024, 1160
BstENI	CCTNNNNNAGG	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	838, 1017
BstKTI	GATC	4 cut(s)	105, 889, 1057, 1177
BstMAI	GTCTC	3 cut(s)	53, 174, 1125
BstMBI	GATC	4 cut(s)	102, 886, 1054, 1174
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 913
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	3 cut(s)	98, 371, 1170
BstSFI	CTRYAG	1 cut(s)	874
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	762, 950
BstX2I	RGATCY	2 cut(s)	102, 1174
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	2 cut(s)	102, 1174
BstZI	CGGCCG	1 cut(s)	757
BsuRI	GGCC	6 cut(s)	371, 499, 624, 710, 759, 1034
BtsCI	GGATG	1 cut(s)	678
BtsI	GCAGTG	3 cut(s)	26, 911, 1098
BtsIMutI	CAGTG	5 cut(s)	26, 306, 766, 911, 1098
Cac8I	GCNNGC	3 cut(s)	66, 708, 1138
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	2 cut(s)	838, 1017
Cfr10I	RCCGGY	2 cut(s)	64, 1136
Cfr13I	GGNCC	3 cut(s)	95, 515, 1167
CseI	GACGC	3 cut(s)	70, 446, 1142
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	438, 808, 924
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	942, 954, 1024, 1160
DpnI	GATC	4 cut(s)	104, 888, 1056, 1176
DpnII	GATC	4 cut(s)	102, 886, 1054, 1174
EaeI	YGGCCR	2 cut(s)	757, 1032
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	941
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	943
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	95, 515, 1167
Eco52I	CGGCCG	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	941
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	941
EcoNI	CCTNNNNNAGG	1 cut(s)	670
EcoO109I	RGGNCCY	2 cut(s)	95, 1167
EcoT14I	CCWWGG	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	2 cut(s)	53, 1125
FaeI	CATG	3 cut(s)	441, 811, 927
FaqI	GGGAC	2 cut(s)	81, 1153
FatI	CATG	3 cut(s)	437, 807, 923
FauI	CCCGC	2 cut(s)	153, 1157
Fnu4HI	GCNGC	3 cut(s)	760, 776, 964
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	3 cut(s)	760, 776, 964
FspBI	CTAG	2 cut(s)	278, 639
FspI	TGCGCA	1 cut(s)	837
GlaI	GCGC	2 cut(s)	837, 1016
GluI	GCNGC	3 cut(s)	760, 776, 964
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	6 cut(s)	371, 499, 624, 710, 759, 1034
HapII	CCGG	8 cut(s)	65, 100, 132, 372, 1001, 1137, 1172, 1204
HgaI	GACGC	3 cut(s)	70, 446, 1142
HhaI	GCGC	2 cut(s)	838, 1017
Hin1I	GRCGYC	2 cut(s)	62, 1134
Hin1II	CATG	3 cut(s)	441, 811, 927
Hin6I	GCGC	2 cut(s)	836, 1015
HinP1I	GCGC	2 cut(s)	836, 1015
HinfI	GANTC	2 cut(s)	449, 946
HpaII	CCGG	8 cut(s)	65, 100, 132, 372, 1001, 1137, 1172, 1204
HphI	GGTGA	3 cut(s)	27, 455, 1099
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	7 cut(s)	179, 418, 494, 891, 945, 1040, 1071
Hpy188III	TCNNGA	1 cut(s)	808
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	1068
HpyAV	CCTTC	5 cut(s)	166, 489, 605, 721, 977
HpyCH4III	ACNGT	3 cut(s)	326, 770, 799
HpyCH4V	TGCA	9 cut(s)	229, 348, 441, 539, 551, 596, 608, 629, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 913
HpyF3I	CTNAG	4 cut(s)	942, 954, 1024, 1160
Hsp92I	GRCGYC	2 cut(s)	62, 1134
Hsp92II	CATG	3 cut(s)	441, 811, 927
HspAI	GCGC	2 cut(s)	836, 1015
KflI	GGGWCCC	2 cut(s)	95, 1167
KroI	GCCGGC	2 cut(s)	64, 1136
KroNI	GCCGGC	2 cut(s)	66, 1138
Kzo9I	GATC	4 cut(s)	102, 886, 1054, 1174
LmnI	GCTCC	5 cut(s)	84, 117, 225, 675, 1156
Lsp1109I	GCAGC	2 cut(s)	762, 950
LweI	GCATC	2 cut(s)	687, 781
MaeI	CTAG	2 cut(s)	278, 639
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	104, 888, 1056, 1176
MboI	GATC	4 cut(s)	102, 886, 1054, 1174
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	102, 1174
MhlI	GDGCHC	3 cut(s)	350, 402, 943
MluCI	AATT	2 cut(s)	540, 632
MlyI	GAGTC	1 cut(s)	940
MmeI	TCCRAC	1 cut(s)	357
MroNI	GCCGGC	2 cut(s)	64, 1136
MroXI	GAANNNNTTC	2 cut(s)	429, 1193
MseI	TTAA	2 cut(s)	89, 591
MspI	CCGG	8 cut(s)	65, 100, 132, 372, 1001, 1137, 1172, 1204
MspR9I	CCNGG	3 cut(s)	100, 373, 1172
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 913
NaeI	GCCGGC	2 cut(s)	66, 1138
NciI	CCSGG	3 cut(s)	100, 373, 1172
NdeII	GATC	4 cut(s)	102, 886, 1054, 1174
NgoMIV	GCCGGC	2 cut(s)	64, 1136
NlaIII	CATG	3 cut(s)	441, 811, 927
NsbI	TGCGCA	1 cut(s)	837
PagI	TCATGA	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	624
PdiI	GCCGGC	2 cut(s)	66, 1138
PdmI	GAANNNNTTC	2 cut(s)	429, 1193
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	761, 777, 965
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
PpuMI	RGGWCCY	2 cut(s)	95, 1167
PshAI	GACNNNNGTC	1 cut(s)	752
PshBI	ATTAAT	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	943
Psp5II	RGGWCCY	2 cut(s)	95, 1167
PspFI	CCCAGC	1 cut(s)	656
PspPI	GGNCC	3 cut(s)	95, 515, 1167
PspPPI	RGGWCCY	2 cut(s)	95, 1167
PsuI	RGATCY	2 cut(s)	102, 1174
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	943
SaqAI	TTAA	2 cut(s)	89, 591
SatI	GCNGC	3 cut(s)	760, 776, 964
Sau3AI	GATC	4 cut(s)	102, 886, 1054, 1174
Sau96I	GGNCC	3 cut(s)	95, 515, 1167
SchI	GAGTC	1 cut(s)	940
ScrFI	CCNGG	3 cut(s)	100, 373, 1172
SduI	GDGCHC	3 cut(s)	350, 402, 943
SfaNI	GCATC	2 cut(s)	687, 781
SfcI	CTRYAG	1 cut(s)	874
SinI	GGWCC	3 cut(s)	95, 515, 1167
Sse9I	AATT	2 cut(s)	540, 632
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	4 cut(s)	44, 146, 760, 1164
SspMI	CTAG	2 cut(s)	278, 639
SstI	GAGCTC	1 cut(s)	943
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	3 cut(s)	98, 371, 1170
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	3 cut(s)	326, 770, 799
TaqI	TCGA	2 cut(s)	929, 1053
TasI	AATT	2 cut(s)	540, 632
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	89, 591
Tru9I	TTAA	2 cut(s)	89, 591
TscAI	CASTG	5 cut(s)	33, 306, 773, 918, 1105
TseI	GCWGC	2 cut(s)	775, 963
TspDTI	ATGAA	3 cut(s)	258, 714, 796
TspGWI	ACGGA	2 cut(s)	461, 552
TspRI	CASTG	5 cut(s)	33, 306, 773, 918, 1105
VneI	GTGCAC	1 cut(s)	346
VpaK11BI	GGWCC	3 cut(s)	95, 515, 1167
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	670
XmnI	GAANNNNTTC	2 cut(s)	429, 1193
XspI	CTAG	2 cut(s)	278, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.