Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

29373 .. 33378

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgatacctctggtgtttggttcttcactgccctcaccgacaccgccagaggcagtagagacgccggctacaaagaaatgtgggagcttagcgggtccccggatcttcccaaatggaagccgttcgggttccggtaacgggttcccgccgtttcttcccaaagaggttgagaagatccgagacccttatgccagaaacttggctcaaagaatggagaggctccctgtgcagatggggttatatgaaagttgtataatgagtagttgtgtgaaacctctagtacaaaccaagaacaatccagtggttcttctccattgctttgacagttcttgtttagaatggaggtgcacatatcccctgcttgaagaggccgggttggaggcttgggcgattgatgtgctcgggtggggcttctccgatttagaaaggcttccaccatgcaatcaggaatcaaagcgtcatcacctctatcagttttggaagtcctacatcagaaggccgatgatattagttggaccaagcctcggtgcttctgttgcaattgactttgcagttagttatccgtttgctgttgaaaagctggttttgattaatgcaagtgtgtacgcagaaggcaccaaaggccttgcagaatttcctagagtattagcctatgctggggtttccttgttgagcagcatccctctacggctttacgccaatacgctggccttcaatgacatttcattagctacaacctttgattggactaatgtcggccgcttacactgtttgctgccttggtggaaagatgcaacagtaagtttcatgagtagtgggggctacaatgttattgcgcaaataaaacaggtaaagcagaaagcacttgtcatctgtagtgagaaagatcggattatcaactacaagcaaacactggtaaagcagaaagcacttgtcatctgtagtgagaaagatcggattatcagctacaagcaaacactgagactgcggtgtgaactaccctctgcaatcatgcggctaataccggatggtggtcatcttcctcatgttgacaatcccatctctgttgcaaagctaattgcagggtttgctcacaatgaccgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

369

Amino Acids

41.01

Weight (kDa)

9.0

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	7 cut(s)	44, 92, 146, 760, 988, 1015, 1102
AclWI	GGATC	2 cut(s)	110, 169
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	282, 605
AfiI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 744, 1031
AgsI	TTSAA	3 cut(s)	365, 575, 715
AluBI	AGCT	5 cut(s)	87, 580, 731, 966, 1075
AluI	AGCT	5 cut(s)	87, 580, 731, 966, 1075
Alw21I	GWGCWC	2 cut(s)	350, 402
Alw26I	GTCTC	3 cut(s)	53, 174, 976
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	2 cut(s)	110, 169
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	369, 497, 622, 708, 757
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	675, 775, 1104
ApoI	RAATTY	1 cut(s)	632
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	121, 429
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	2 cut(s)	95, 515
AsuC2I	CCSGG	2 cut(s)	100, 373
AsuHPI	GGTGA	2 cut(s)	27, 455
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	95, 515
BaeGI	GKGCMC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	614
Bbv12I	GWGCWC	2 cut(s)	350, 402
BbvI	GCAGC	3 cut(s)	687, 762, 1091
BccI	CCATC	3 cut(s)	226, 1022, 1067
BceAI	ACGGC	3 cut(s)	105, 133, 704
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	2 cut(s)	100, 373
BcoDI	GTCTC	3 cut(s)	53, 174, 976
BfaI	CTAG	2 cut(s)	278, 639
BfmI	CTRYAG	2 cut(s)	874, 940
BisI	GCNGC	5 cut(s)	676, 760, 776, 1016, 1105
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	5 cut(s)	677, 761, 777, 1017, 1106
Bme1390I	CCNGG	2 cut(s)	100, 373
Bme18I	GGWCC	2 cut(s)	95, 515
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	95, 515
BmiI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BmrFI	CCNGG	2 cut(s)	100, 373
BmsI	GCATC	2 cut(s)	687, 781
BoxI	GACNNNNGTC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	100, 373
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	98, 523, 779
BsaWI	WCCGGW	2 cut(s)	131, 1024
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 744, 1031
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	299, 918
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	98, 523, 779
BseGI	GGATG	2 cut(s)	678, 1033
BseLI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 744, 1031
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	2 cut(s)	299, 918
BseSI	GKGCMC	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	3 cut(s)	687, 762, 1091
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	2 cut(s)	350, 402
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	65, 100, 132, 372, 1025
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	5 cut(s)	138, 524, 657, 744, 1031
BsmAI	GTCTC	3 cut(s)	53, 174, 976
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	371, 499, 624, 710, 759
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	350, 402
Bsp143I	GATC	4 cut(s)	102, 174, 886, 952
Bsp1720I	GCTNAGC	1 cut(s)	88
BspACI	CCGC	7 cut(s)	44, 92, 146, 760, 988, 1015, 1102
BspANI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BspCNI	CTCAG	1 cut(s)	972
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BspPI	GGATC	2 cut(s)	110, 169
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	299, 918
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	98, 523, 779
BssMI	GATC	4 cut(s)	102, 174, 886, 952
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	326, 770, 799
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	2 cut(s)	66, 708
BstDEI	CTNAG	2 cut(s)	88, 980
BstF5I	GGATG	2 cut(s)	678, 1033
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	4 cut(s)	105, 177, 889, 955
BstMAI	GTCTC	3 cut(s)	53, 174, 976
BstMBI	GATC	4 cut(s)	102, 174, 886, 952
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1088
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	98, 371
BstSFI	CTRYAG	2 cut(s)	874, 940
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	687, 762, 1091
BstX2I	RGATCY	2 cut(s)	102, 174
BstXI	CCANNNNNNTGG	2 cut(s)	199, 706
BstYI	RGATCY	2 cut(s)	102, 174
BstZI	CGGCCG	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BtsCI	GGATG	2 cut(s)	678, 1033
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	5 cut(s)	26, 306, 766, 911, 977
Cac8I	GCNNGC	2 cut(s)	66, 708
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	95, 515
CseI	GACGC	2 cut(s)	70, 446
Csp6I	GTAC	2 cut(s)	281, 604
CviAII	CATG	4 cut(s)	438, 808, 1012, 1046
CviQI	GTAC	2 cut(s)	281, 604
DdeI	CTNAG	2 cut(s)	88, 980
DpnI	GATC	4 cut(s)	104, 176, 888, 954
DpnII	GATC	4 cut(s)	102, 174, 886, 952
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	95, 515
Eco52I	CGGCCG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	441, 811, 1015, 1049
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	4 cut(s)	437, 807, 1011, 1045
FauI	CCCGC	2 cut(s)	85, 153
Fnu4HI	GCNGC	5 cut(s)	676, 760, 776, 1016, 1105
FokI	GGATG	2 cut(s)	665, 1040
Fsp4HI	GCNGC	5 cut(s)	676, 760, 776, 1016, 1105
FspBI	CTAG	2 cut(s)	278, 639
FspI	TGCGCA	1 cut(s)	837
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	5 cut(s)	676, 760, 776, 1016, 1105
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	371, 499, 624, 710, 759
HapII	CCGG	5 cut(s)	65, 100, 132, 372, 1025
HgaI	GACGC	2 cut(s)	70, 446
HhaI	GCGC	1 cut(s)	838
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	441, 811, 1015, 1049
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	5 cut(s)	65, 100, 132, 372, 1025
HphI	GGTGA	2 cut(s)	27, 455
Hpy166II	GTNNAC	4 cut(s)	348, 604, 995, 1051
Hpy188I	TCNGA	5 cut(s)	179, 418, 494, 891, 957
Hpy188III	TCNNGA	2 cut(s)	446, 808
Hpy8I	GTNNAC	4 cut(s)	348, 604, 995, 1051
HpyAV	CCTTC	3 cut(s)	489, 605, 721
HpyCH4III	ACNGT	3 cut(s)	326, 770, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1088
HpyF3I	CTNAG	2 cut(s)	88, 980
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	441, 811, 1015, 1049
HspAI	GCGC	1 cut(s)	836
KflI	GGGWCCC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	102, 174, 886, 952
LmnI	GCTCC	2 cut(s)	84, 225
Lsp1109I	GCAGC	3 cut(s)	687, 762, 1091
LweI	GCATC	2 cut(s)	687, 781
MaeI	CTAG	2 cut(s)	278, 639
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	104, 176, 888, 954
MboI	GATC	4 cut(s)	102, 174, 886, 952
MboII	GAAGA	7 cut(s)	15, 97, 146, 184, 299, 377, 1031
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	102, 174
MhlI	GDGCHC	2 cut(s)	350, 402
MluCI	AATT	3 cut(s)	540, 632, 1077
MmeI	TCCRAC	2 cut(s)	357, 493
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	121, 429
MseI	TTAA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	1104
MspI	CCGG	5 cut(s)	65, 100, 132, 372, 1025
MspR9I	CCNGG	2 cut(s)	100, 373
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1088
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	100, 373
NdeII	GATC	4 cut(s)	102, 174, 886, 952
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	441, 811, 1015, 1049
NlaIV	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
NsbI	TGCGCA	1 cut(s)	837
PagI	TCATGA	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	121, 429
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	5 cut(s)	677, 761, 777, 1017, 1106
PpuMI	RGGWCCY	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	752
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	656
PspN4I	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
PspPI	GGNCC	2 cut(s)	95, 515
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	102, 174
RsaI	GTAC	2 cut(s)	282, 605
RsaNI	GTAC	2 cut(s)	281, 604
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	5 cut(s)	676, 760, 776, 1016, 1105
Sau3AI	GATC	4 cut(s)	102, 174, 886, 952
Sau96I	GGNCC	2 cut(s)	95, 515
ScrFI	CCNGG	2 cut(s)	100, 373
SduI	GDGCHC	2 cut(s)	350, 402
SfaNI	GCATC	2 cut(s)	687, 781
SfcI	CTRYAG	2 cut(s)	874, 940
SinI	GGWCC	2 cut(s)	95, 515
Sse9I	AATT	3 cut(s)	540, 632, 1077
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	7 cut(s)	44, 92, 146, 760, 988, 1015, 1102
SspMI	CTAG	2 cut(s)	278, 639
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	98, 371
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	3 cut(s)	326, 770, 799
TasI	AATT	3 cut(s)	540, 632, 1077
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	2 cut(s)	762, 1018
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	5 cut(s)	33, 306, 773, 918, 984
TseI	GCWGC	3 cut(s)	675, 775, 1104
TspDTI	ATGAA	3 cut(s)	258, 714, 796
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	5 cut(s)	33, 306, 773, 918, 984
VneI	GTGCAC	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	95, 515
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	632
XmnI	GAANNNNTTC	2 cut(s)	121, 429
XspI	CTAG	2 cut(s)	278, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.