Rorug02G0519100

hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005254
Physical Location & Seq
Reverse (-)
65041929 .. 65043505
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0519100.1

Sequence Viewer

Length: 528 bp
ATGGTGTTTGAACATTTCATGGCTGAAATGTTGAATTGTATGGCTACTCTTTTACAAGCTTCCTCTGGCTGGGAGAGACTTGGTTTGAAGGAACGTGCTTTGACAGATGCCAACAATAGGAAGGAGCTGAGGTCGAGTCACACTAATGGAACAAAGACTTTTGCACAGATGCGATATGAATATGAACAAGTGAATGGTTATGCTCCTGATCGCATAACATTTTTCACAATGACACATACTCGTGAAGACGGAACAATAGTAGATGCCAAGTCATCAGATATAATAGCCAAGTTCAAAAATGGATTAAAGGAGTATGAAGAAGGGCAGGAGATAATGACAGATGAGATCCGCCACAAAGTGTACAGTGATGTACTTGGTCCAGAGAAAAGGAATTGCGTTAGAGGTTATGGTTTAGGAGTCCAATTCACTGATGTTCCAGGAGTTGTCACTAAGGTAAGAGGTATGTGTAGGGAAGTGCATACTCTCAGAGCTGCATGGGAGCAACAAAAGAAGCTCATGTTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

175

Amino Acids

20.13

Weight (kDa)

8.39

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 24 - 140 6.3e-20 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 349
AclWI GGATC 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 2 cut(s) 362, 372
AfiI CCNNNNNNNGG 2 cut(s) 69, 117
AgsI TTSAA 5 cut(s) 11, 34, 88, 295, 523
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 4 cut(s) 59, 127, 491, 514
AluI AGCT 4 cut(s) 59, 127, 491, 514
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 377
AvaII GGWCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 70
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 3 cut(s) 97, 159, 253
BpiI GAAGAC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 117
BseBI CCWGG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 69, 117
BseMII CTCAG 2 cut(s) 119, 499
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 69, 117
BsmAI GTCTC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 2 cut(s) 208, 345
BspACI CCGC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 120, 498
BspPI GGATC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 360
BssMI GATC 2 cut(s) 208, 345
BssSI CACGAG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 128, 450, 485
BstKTI GATC 2 cut(s) 211, 348
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 208, 345
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 370, 426
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 361, 371
CviAII CATG 3 cut(s) 19, 495, 517
CviJI RGCY 8 cut(s) 23, 44, 59, 69, 127, 287, 491, 514
CviKI_1 RGCY 8 cut(s) 23, 44, 59, 69, 127, 287, 491, 514
CviQI GTAC 2 cut(s) 361, 371
DdeI CTNAG 3 cut(s) 128, 450, 485
DpnI GATC 2 cut(s) 210, 347
DpnII GATC 2 cut(s) 208, 345
DraIII CACNNNGTG 1 cut(s) 358
EciI GGCGGA 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 436
FaeI CATG 3 cut(s) 22, 498, 520
FatI CATG 3 cut(s) 18, 494, 516
Fnu4HI GCNGC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 492
GluI GCNGC 1 cut(s) 492
GsaI CCCAGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 22, 498, 520
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 2 cut(s) 136, 417
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 277, 488
Hpy188III TCNNGA 3 cut(s) 206, 242, 380
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 82, 115, 314
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 164, 478, 494
HpyF3I CTNAG 3 cut(s) 128, 450, 485
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 22, 498, 520
Kzo9I GATC 2 cut(s) 208, 345
LmnI GCTCC 3 cut(s) 124, 208, 499
LpnPI CCDG 7 cut(s) 51, 55, 219, 311, 393, 423, 450
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 3 cut(s) 97, 159, 253
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 137, 445
MalI GATC 2 cut(s) 210, 347
MboI GATC 2 cut(s) 208, 345
MboII GAAGA 2 cut(s) 257, 329
MflI RGATCY 1 cut(s) 345
MluCI AATT 3 cut(s) 34, 391, 422
MlyI GAGTC 2 cut(s) 145, 426
MnlI CCTC 4 cut(s) 73, 123, 395, 452
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 2 cut(s) 144, 240
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
NdeII GATC 2 cut(s) 208, 345
NlaIII CATG 3 cut(s) 22, 498, 520
NmuCI GTSAC 2 cut(s) 137, 445
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 2 cut(s) 144, 425
PpsI GAGTC 2 cut(s) 144, 425
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 436
PspPI GGNCC 1 cut(s) 377
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 2 cut(s) 362, 372
RsaNI GTAC 2 cut(s) 361, 371
RseI CAYNNNNRTG 2 cut(s) 144, 240
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 208, 345
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 2 cut(s) 145, 426
ScrFI CCNGG 1 cut(s) 438
SetI ASST 9 cut(s) 61, 97, 129, 134, 406, 456, 463, 493, 516
SfaNI GCATC 3 cut(s) 97, 159, 253
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 144, 240
Sse9I AATT 3 cut(s) 34, 391, 422
SsiI CCGC 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 134
TasI AATT 3 cut(s) 34, 391, 422
TatI WGTACW 2 cut(s) 360, 370
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 2 cut(s) 370, 433
TseFI GTSAC 2 cut(s) 137, 445
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 137, 445
TspDTI ATGAA 4 cut(s) 7, 192, 198, 330
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 370, 433
VpaK11BI GGWCC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.