Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4512753 .. 4516585

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1066200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCCTCTCACTTCCAGTGGAAAGCAAAACCAGTTGCAAAGATCACAGGAAGAATCAGAATGGTAGTGCTAATGTGGGGTGCTGCGCCACCGTCGCGGCCGCCTCTGGGTAAGAAAGGTGGAAGCTTGAGGGGTCTGATCAGCAGGGCTGTGGTGAGTAATGCGAAGGGTGCAGGTACAAACAATGGGTTCCCATCGTTTCTTCCAAAGGAGGTTGACAAAATTAAGGACCCGTACGCCAGAACGTTGGCTCGGAGGATGGAGAGGCTCCCTGTGCCGATAGGGTCGTCCGAAAGTTGTATTATGAGTAGTTGTGTAAGGCCTTTAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCGTATCCCCTGCTCGAAGAGGCTGGGTTGGAGGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGAAAGGCGTCCACCATGCAGTGCGGCATCAAAGCGTGATCACCTCTATCAGTTTTGGAAGTCATACATCAGAAGACCGATGATATTAGTTGGACCAAGCCTCGGTGGTTCTGTTGCAATTGACTTTGCATACCACCATCCAGTAGCTGTCGAAAAGCTGGTTTTAATCAATGCAAGCGTCTATGCAGAAGGCACCGGAGACATGGCAAAGTTACCGAAAGCTGTAGCCTATGCTGGGGTTTCCTTATTGAAGAGCACCCCTCTACGCTTCTACGCAAATATGCTGGCCTTTAACAGCATTTCATTAGCTACAACTTTTGATTGGACTAATGTCGGGCGCTTACACTGTCTGCAGCCTTGGTGGAAAGATGCAACAGTCAGTTTTATGACTAGTGGGGGCTATAACGTTGTTTCCCAAATAAAACAGGTGAAGCAGAAAGTGCTTGTGATTTGCAGCGAGCAGGATAATATTATCAGCTACAAACAAATACTGAGGTTACGCTGTGAGCTTCCGTTTGCAATCATGCGGCTAATACCAGATACCGGTCATCTCCCTCACGTCGAGAATCCCGCCTCCGTTTCAAAACTAATTGCAGAGTTTGCTCGGAACGATCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

364

Amino Acids

40.26

Weight (kDa)

9.54

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	115 - 347	2.9e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	117 - 350	1.3e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	117 - 322	5.5e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	662
AccII	CGCG	2 cut(s)	97, 398
AciI	CCGC	5 cut(s)	97, 101, 494, 997, 1041
AclI	AACGTT	2 cut(s)	245, 876
AcoI	YGGCCR	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	2 cut(s)	178, 236
AfiI	CCNNNNNNNGG	4 cut(s)	107, 572, 705, 1013
AgeI	ACCGGT	1 cut(s)	1013
AgsI	TTSAA	2 cut(s)	721, 1053
AhlI	ACTAGT	1 cut(s)	860
AjiI	CACGTC	1 cut(s)	1030
AluBI	AGCT	7 cut(s)	126, 617, 628, 692, 779, 948, 979
AluI	AGCT	7 cut(s)	126, 617, 628, 692, 779, 948, 979
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	98, 320, 756
ApeKI	GCWGC	3 cut(s)	83, 823, 924
AsiGI	ACCGGT	1 cut(s)	1013
AspLEI	GCGC	3 cut(s)	88, 398, 810
AspS9I	GGNCC	2 cut(s)	229, 563
AsuHPI	GGTGA	3 cut(s)	166, 503, 910
AvaII	GGWCC	2 cut(s)	229, 563
BanI	GGYRCC	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	70, 835, 936
BccI	CCATC	3 cut(s)	202, 253, 615
BciVI	GTATCC	1 cut(s)	411
BclI	TGATCA	2 cut(s)	138, 508
BcoDI	GTCTC	1 cut(s)	663
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	2 cut(s)	693, 821
BfoI	RGCGCY	1 cut(s)	811
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	411
BisI	GCNGC	7 cut(s)	84, 98, 101, 495, 824, 925, 998
BlsI	GCNGC	7 cut(s)	85, 99, 102, 496, 825, 926, 999
Bme18I	GGWCC	2 cut(s)	229, 563
BmgBI	CACGTC	1 cut(s)	1030
BmgT120I	GGNCC	2 cut(s)	229, 563
BmiI	GGNNCC	4 cut(s)	191, 231, 269, 664
BmsI	GCATC	2 cut(s)	506, 829
BoxI	GACNNNNGTC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	571, 827
BsaWI	WCCGGW	3 cut(s)	346, 665, 1013
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 572, 705, 1013
Bse118I	RCCGGY	1 cut(s)	1013
Bse1I	ACTGG	3 cut(s)	16, 32, 611
Bse3DI	GCAATG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	571, 827
BseGI	GGATG	2 cut(s)	264, 607
BseLI	CCNNNNNNNGG	4 cut(s)	107, 572, 705, 1013
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	953
BseNI	ACTGG	3 cut(s)	16, 32, 611
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	70, 835, 936
BseYI	CCCAGC	2 cut(s)	419, 704
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	97, 398
Bsh1285I	CGRYCG	2 cut(s)	101, 1084
BshFI	GGCC	3 cut(s)	100, 322, 758
BshNI	GGYRCC	1 cut(s)	662
BshTI	ACCGGT	1 cut(s)	1013
BsiEI	CGRYCG	2 cut(s)	101, 1084
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	3 cut(s)	347, 666, 1014
BsiWI	CGTACG	1 cut(s)	234
BslI	CCNNNNNNNGG	4 cut(s)	107, 572, 705, 1013
BsmAI	GTCTC	1 cut(s)	663
BsnI	GGCC	3 cut(s)	100, 322, 758
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	5 cut(s)	42, 138, 339, 508, 1081
BspACI	CCGC	5 cut(s)	97, 101, 494, 997, 1041
BspANI	GGCC	3 cut(s)	100, 322, 758
BspCNI	CTCAG	1 cut(s)	954
BspFNI	CGCG	2 cut(s)	97, 398
BspLI	GGNNCC	4 cut(s)	191, 231, 269, 664
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	1013
BsrI	ACTGG	3 cut(s)	16, 32, 611
BssAI	RCCGGY	1 cut(s)	1013
BssECI	CCNNGG	2 cut(s)	571, 827
BssMI	GATC	5 cut(s)	42, 138, 339, 508, 1081
BssNI	GRCGYC	1 cut(s)	478
BssT1I	CCWWGG	1 cut(s)	827
Bst4CI	ACNGT	4 cut(s)	93, 374, 818, 847
Bst6I	CTCTTC	2 cut(s)	408, 716
BstACI	GRCGYC	1 cut(s)	478
BstAPI	GCANNNNNTGC	2 cut(s)	910, 1070
BstC8I	GCNNGC	3 cut(s)	646, 756, 929
BstDEI	CTNAG	1 cut(s)	962
BstF5I	GGATG	2 cut(s)	264, 607
BstFNI	CGCG	2 cut(s)	97, 398
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	3 cut(s)	88, 398, 810
BstKTI	GATC	5 cut(s)	45, 141, 342, 511, 1084
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	5 cut(s)	42, 138, 339, 508, 1081
BstMCI	CGRYCG	2 cut(s)	101, 1084
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 170, 274, 910, 1070
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	693, 821
BstUI	CGCG	2 cut(s)	97, 398
BstV1I	GCAGC	3 cut(s)	70, 835, 936
BstV2I	GAAGAC	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	100, 322, 758
BtrI	CACGTC	1 cut(s)	1030
BtsCI	GGATG	2 cut(s)	264, 607
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	3 cut(s)	23, 496, 814
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	646, 756, 929
CaiI	CAGNNNCTG	1 cut(s)	617
CciNI	GCGGCCGC	1 cut(s)	98
CfoI	GCGC	3 cut(s)	88, 398, 810
Cfr10I	RCCGGY	1 cut(s)	1013
Cfr13I	GGNCC	2 cut(s)	229, 563
CseI	GACGC	2 cut(s)	467, 637
Csp6I	GTAC	2 cut(s)	177, 235
CspAI	ACCGGT	1 cut(s)	1013
CviAII	CATG	3 cut(s)	486, 673, 994
CviQI	GTAC	2 cut(s)	177, 235
DdeI	CTNAG	1 cut(s)	962
DpnI	GATC	5 cut(s)	44, 140, 341, 510, 1083
DpnII	GATC	5 cut(s)	42, 138, 339, 508, 1081
DraI	TTTAAA	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	98
EagI	CGGCCG	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	408, 716
EarI	CTCTTC	2 cut(s)	408, 716
EclXI	CGGCCG	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	827
Eco147I	AGGCCT	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	229, 563
Eco52I	CGGCCG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	3 cut(s)	489, 676, 997
FatI	CATG	3 cut(s)	485, 672, 993
FauI	CCCGC	1 cut(s)	1048
FbaI	TGATCA	2 cut(s)	138, 508
Fnu4HI	GCNGC	7 cut(s)	84, 98, 101, 495, 824, 925, 998
FokI	GGATG	2 cut(s)	271, 594
Fsp4HI	GCNGC	7 cut(s)	84, 98, 101, 495, 824, 925, 998
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	3 cut(s)	87, 397, 809
GluI	GCNGC	7 cut(s)	84, 98, 101, 495, 824, 925, 998
GsaI	CCCAGC	2 cut(s)	423, 708
HaeII	RGCGCY	1 cut(s)	811
HaeIII	GGCC	3 cut(s)	100, 322, 758
HapII	CCGG	3 cut(s)	347, 666, 1014
HgaI	GACGC	2 cut(s)	467, 637
HhaI	GCGC	3 cut(s)	88, 398, 810
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	3 cut(s)	489, 676, 997
Hin6I	GCGC	3 cut(s)	86, 396, 808
HinP1I	GCGC	3 cut(s)	86, 396, 808
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	54, 1036
HpaII	CCGG	3 cut(s)	347, 666, 1014
HphI	GGTGA	3 cut(s)	166, 503, 910
Hpy166II	GTNNAC	2 cut(s)	217, 482
Hpy188I	TCNGA	7 cut(s)	59, 138, 255, 292, 466, 542, 1077
Hpy188III	TCNNGA	1 cut(s)	1033
Hpy8I	GTNNAC	2 cut(s)	217, 482
Hpy99I	CGWCG	2 cut(s)	97, 1034
HpyAV	CCTTC	2 cut(s)	160, 653
HpyCH4III	ACNGT	4 cut(s)	93, 374, 818, 847
HpyCH4IV	ACGT	3 cut(s)	245, 876, 1029
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 170, 274, 910, 1070
HpyF3I	CTNAG	1 cut(s)	962
HpySE526I	ACGT	3 cut(s)	245, 876, 1029
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	489, 676, 997
HspAI	GCGC	3 cut(s)	86, 396, 808
Ksp22I	TGATCA	2 cut(s)	138, 508
Kzo9I	GATC	5 cut(s)	42, 138, 339, 508, 1081
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	3 cut(s)	70, 835, 936
LweI	GCATC	2 cut(s)	506, 829
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	3 cut(s)	245, 876, 1029
MaeIII	GTNAC	2 cut(s)	681, 966
MalI	GATC	5 cut(s)	44, 140, 341, 510, 1083
MboI	GATC	5 cut(s)	42, 138, 339, 508, 1081
MboII	GAAGA	5 cut(s)	63, 194, 425, 555, 733
MfeI	CAATTG	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	728
MluCI	AATT	3 cut(s)	222, 588, 1059
MmeI	TCCRAC	2 cut(s)	405, 541
MseI	TTAA	4 cut(s)	225, 326, 635, 762
MspI	CCGG	3 cut(s)	347, 666, 1014
MunI	CAATTG	1 cut(s)	588
MvnI	CGCG	2 cut(s)	97, 398
MwoI	GCNNNNNNNGC	5 cut(s)	94, 170, 274, 910, 1070
NdeII	GATC	5 cut(s)	42, 138, 339, 508, 1081
NlaIII	CATG	3 cut(s)	489, 676, 997
NlaIV	GGNNCC	4 cut(s)	191, 231, 269, 664
NotI	GCGGCCGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	1081
PfeI	GAWTC	2 cut(s)	54, 1036
Pfl23II	CGTACG	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	1013
PkrI	GCNGC	7 cut(s)	85, 99, 102, 496, 825, 926, 999
Ple19I	CGATCG	1 cut(s)	1084
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	800
Psp1406I	AACGTT	2 cut(s)	245, 876
Psp5II	RGGWCCY	1 cut(s)	229
PspFI	CCCAGC	2 cut(s)	419, 704
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	191, 231, 269, 664
PspPI	GGNCC	2 cut(s)	229, 563
PspPPI	RGGWCCY	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	617
PvuI	CGATCG	1 cut(s)	1084
RsaI	GTAC	2 cut(s)	178, 236
RsaNI	GTAC	2 cut(s)	177, 235
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	4 cut(s)	225, 326, 635, 762
SatI	GCNGC	7 cut(s)	84, 98, 101, 495, 824, 925, 998
Sau3AI	GATC	5 cut(s)	42, 138, 339, 508, 1081
Sau96I	GGNCC	2 cut(s)	229, 563
SduI	GDGCHC	1 cut(s)	728
SfaNI	GCATC	2 cut(s)	506, 829
SfcI	CTRYAG	2 cut(s)	693, 821
SinI	GGWCC	2 cut(s)	229, 563
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	860
Sse9I	AATT	3 cut(s)	222, 588, 1059
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	5 cut(s)	97, 101, 494, 997, 1041
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	4 cut(s)	93, 374, 818, 847
TaiI	ACGT	3 cut(s)	248, 879, 1032
TaqI	TCGA	3 cut(s)	411, 621, 1032
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	3 cut(s)	222, 588, 1059
TauI	GCSGC	4 cut(s)	100, 103, 497, 1000
TfiI	GAWTC	2 cut(s)	54, 1036
Tru1I	TTAA	4 cut(s)	225, 326, 635, 762
Tru9I	TTAA	4 cut(s)	225, 326, 635, 762
TscAI	CASTG	3 cut(s)	23, 496, 821
TseI	GCWGC	3 cut(s)	83, 823, 924
TspDTI	ATGAA	1 cut(s)	762
TspGWI	ACGGA	2 cut(s)	972, 1036
TspRI	CASTG	3 cut(s)	23, 496, 821
VpaK11BI	GGWCC	2 cut(s)	229, 563
XspI	CTAG	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.