Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

7673481 .. 7677098

Gene Structure 3618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATGCCTCTGGTGTTTGGTTCTTCACTGCCCTCACCAACACCACCAGAGGCAGTAGAGACGCCGGCTACAAAGAAATGTGGGAGCTTAACGGGTCCCCGGATCTTCCCAAATGGAAGCCGTTCGGGTTCCGGTAATGGGTTCCCGCCGTTTCTTCCCAAAGAGGTTGAGAAGATCAGAGACCCTTATGCCAGAAACTTGGCTCAAAGAATGGAGAGGCTCCCTGTGCAGATGGGGTTATATGAAAGTTGTATAATGAGTAGTTGTGTGAAACCTCTAGTACAAACCAAGAACAATCCAGTGGTTCTTCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCATATCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGCGATTGATGTGCTCGGGTGGGGCTTCTCCAATTTAGAAAGGCTTCCACCATGCAATCCGGAATCAAAGCGTCATCACCTCTATCAGTTTTGGAAGTCCTACATCCGAAGGCCGATGATATTAGTTGGACCAAGCCTCGGTGCTTCTGTTGCAATTGACTTTGCAGTTAGTTATCCATTTGCCGTTGAAAAGCTGGTTTTGATTAATGCAAGTGTGTATGCAGAAGGCACCAAAGGCCTTGCAGAATTACCTAGAGTATTAGCCTATGCTGGGGTTTCCTTGTTGAGGAGCATCCCTCTACGGCTTTACGCTAATATACTGGCCTTCAATGACATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGCCGCTTACACTGTTTGCTGCCTTGGTGGAAAGACGCAACAGTAAGTTTCATGAGTAGTGGGGGCTACAATGTTATTGCGCAAATAAAACAGGTAAAGCAGAAAGCACTTGTCATCTGTAGTGAGAAAGATCGGATTATCGACTACAAGCAAACACTGAGACTACGGTGTGAACTACCCTCTGCAATCATGCGGCTAATACCGGATGGTGGTCATCTTCCTCATGTTGACAATCCCATCTCTGTTGCAAAGCTAATTGCAGGGTTTGCTCACAATGACCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

347

Amino Acids

38.5

Weight (kDa)

8.91

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	101 - 335	8e-14	Alpha/beta hydrolase family
Hydrolase_4	PF12146	101 - 325	5e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	349, 837
AccB1I	GGYRCC	1 cut(s)	614
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	146, 760, 949
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	757
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	6 cut(s)	138, 524, 657, 672, 744, 965
AgsI	TTSAA	3 cut(s)	365, 575, 715
AluBI	AGCT	4 cut(s)	87, 580, 731, 1009
AluI	AGCT	4 cut(s)	87, 580, 731, 1009
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	3 cut(s)	53, 174, 910
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	5 cut(s)	369, 497, 622, 708, 757
ApeKI	GCWGC	1 cut(s)	775
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	121, 429
AspLEI	GCGC	2 cut(s)	350, 838
AspS9I	GGNCC	2 cut(s)	95, 515
AsuC2I	CCSGG	2 cut(s)	100, 373
AsuHPI	GGTGA	2 cut(s)	27, 455
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	95, 515
BanI	GGYRCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	3 cut(s)	226, 956, 1001
BceAI	ACGGC	4 cut(s)	105, 133, 554, 704
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	2 cut(s)	100, 373
BcoDI	GTCTC	3 cut(s)	53, 174, 910
BfaI	CTAG	2 cut(s)	278, 639
BfmI	CTRYAG	1 cut(s)	874
BisI	GCNGC	3 cut(s)	760, 776, 950
BlsI	GCNGC	3 cut(s)	761, 777, 951
Bme1390I	CCNGG	2 cut(s)	100, 373
Bme18I	GGWCC	2 cut(s)	95, 515
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	95, 515
BmiI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BmrFI	CCNGG	2 cut(s)	100, 373
BmsI	GCATC	1 cut(s)	687
BoxI	GACNNNNGTC	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpuMI	CCSGG	2 cut(s)	100, 373
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	98, 523, 779
BsaWI	WCCGGW	3 cut(s)	131, 445, 958
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 524, 657, 672, 744, 965
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	299, 711
Bse3DI	GCAATG	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	98, 523, 779
BseGI	GGATG	3 cut(s)	489, 678, 967
BseLI	CCNNNNNNNGG	6 cut(s)	138, 524, 657, 672, 744, 965
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	905
BseNI	ACTGG	2 cut(s)	299, 711
BseRI	GAGGAG	1 cut(s)	688
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	6 cut(s)	65, 100, 132, 372, 446, 959
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	6 cut(s)	138, 524, 657, 672, 744, 965
BsmAI	GTCTC	3 cut(s)	53, 174, 910
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	371, 499, 624, 710, 759
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	102, 174, 886
BspACI	CCGC	3 cut(s)	146, 760, 949
BspANI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BspCNI	CTCAG	1 cut(s)	906
BspEI	TCCGGA	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	299, 711
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	98, 523, 779
BssMI	GATC	3 cut(s)	102, 174, 886
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	779
Bst4CI	ACNGT	5 cut(s)	326, 770, 799, 924, 1037
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	914
BstENI	CCTNNNNNAGG	1 cut(s)	670
BstF5I	GGATG	3 cut(s)	489, 678, 967
BstHHI	GCGC	2 cut(s)	350, 838
BstKTI	GATC	3 cut(s)	105, 177, 889
BstMAI	GTCTC	3 cut(s)	53, 174, 910
BstMBI	GATC	3 cut(s)	102, 174, 886
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1022
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	98, 371
BstSFI	CTRYAG	1 cut(s)	874
BstV1I	GCAGC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BtsCI	GGATG	3 cut(s)	489, 678, 967
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	4 cut(s)	26, 306, 766, 911
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	2 cut(s)	350, 838
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	95, 515
CseI	GACGC	3 cut(s)	70, 446, 800
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	4 cut(s)	438, 808, 946, 980
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	914
DpnI	GATC	3 cut(s)	104, 176, 888
DpnII	GATC	3 cut(s)	102, 174, 886
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	95, 515
Eco52I	CGGCCG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	441, 811, 949, 983
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	4 cut(s)	437, 807, 945, 979
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	760, 776, 950
FokI	GGATG	3 cut(s)	476, 665, 974
Fsp4HI	GCNGC	3 cut(s)	760, 776, 950
FspAI	RTGCGCAY	1 cut(s)	349
FspBI	CTAG	2 cut(s)	278, 639
FspI	TGCGCA	2 cut(s)	349, 837
GlaI	GCGC	2 cut(s)	349, 837
GluI	GCNGC	3 cut(s)	760, 776, 950
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	371, 499, 624, 710, 759
HapII	CCGG	6 cut(s)	65, 100, 132, 372, 446, 959
HgaI	GACGC	3 cut(s)	70, 446, 800
HhaI	GCGC	2 cut(s)	350, 838
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	441, 811, 949, 983
Hin6I	GCGC	2 cut(s)	348, 836
HinP1I	GCGC	2 cut(s)	348, 836
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	6 cut(s)	65, 100, 132, 372, 446, 959
HphI	GGTGA	2 cut(s)	27, 455
Hpy166II	GTNNAC	2 cut(s)	929, 985
Hpy188I	TCNGA	3 cut(s)	179, 494, 891
Hpy188III	TCNNGA	2 cut(s)	446, 808
Hpy8I	GTNNAC	2 cut(s)	929, 985
HpyAV	CCTTC	3 cut(s)	489, 605, 721
HpyCH4III	ACNGT	5 cut(s)	326, 770, 799, 924, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1022
HpyF3I	CTNAG	1 cut(s)	914
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	441, 811, 949, 983
HspAI	GCGC	2 cut(s)	348, 836
KflI	GGGWCCC	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	102, 174, 886
LmnI	GCTCC	3 cut(s)	84, 225, 675
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	2 cut(s)	278, 639
MalI	GATC	3 cut(s)	104, 176, 888
MboI	GATC	3 cut(s)	102, 174, 886
MboII	GAAGA	7 cut(s)	15, 97, 146, 184, 299, 377, 965
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	418, 540, 632, 1011
MmeI	TCCRAC	2 cut(s)	357, 493
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	121, 429
MseI	TTAA	2 cut(s)	89, 591
MspI	CCGG	6 cut(s)	65, 100, 132, 372, 446, 959
MspR9I	CCNGG	2 cut(s)	100, 373
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 1022
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	100, 373
NdeII	GATC	3 cut(s)	102, 174, 886
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	441, 811, 949, 983
NlaIV	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
NsbI	TGCGCA	2 cut(s)	349, 837
PagI	TCATGA	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	121, 429
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	761, 777, 951
PpuMI	RGGWCCY	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	752
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	656
PspN4I	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
PspPI	GGNCC	2 cut(s)	95, 515
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	89, 591
SatI	GCNGC	3 cut(s)	760, 776, 950
Sau3AI	GATC	3 cut(s)	102, 174, 886
Sau96I	GGNCC	2 cut(s)	95, 515
ScrFI	CCNGG	2 cut(s)	100, 373
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	687
SfcI	CTRYAG	1 cut(s)	874
SinI	GGWCC	2 cut(s)	95, 515
Sse9I	AATT	4 cut(s)	418, 540, 632, 1011
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	3 cut(s)	146, 760, 949
SspMI	CTAG	2 cut(s)	278, 639
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	98, 371
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	5 cut(s)	326, 770, 799, 924, 1037
TaqI	TCGA	1 cut(s)	897
TasI	AATT	4 cut(s)	418, 540, 632, 1011
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	2 cut(s)	762, 952
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	89, 591
Tru9I	TTAA	2 cut(s)	89, 591
TscAI	CASTG	4 cut(s)	33, 306, 773, 918
TseI	GCWGC	1 cut(s)	775
TspDTI	ATGAA	3 cut(s)	258, 714, 796
TspRI	CASTG	4 cut(s)	33, 306, 773, 918
VpaK11BI	GGWCC	2 cut(s)	95, 515
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	670
XmnI	GAANNNNTTC	2 cut(s)	121, 429
XspI	CTAG	2 cut(s)	278, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.