Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

35684466 .. 35689242

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46920.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGATAACTCTGGTGTTTGGGTCTTCACTGCCCTCACCAACACCACCAGAGGCAGCAGTGGTGACGCCAGCTACGAAGAAATGCGGGAGCTTAGTAACGGGTCGCCGGATCTTCCCAAATGGATGCGGTTCGGGTTCAGGTAACGGGTTCCCGCCGTTTCTTCCCAAAGAGGTCGAGAAGATCAAAGACCCTTTTGCCAGAAACTTGGCTCAGAGAATGGAGAGGCTCCCTGTTCAGATGGGGTTAGATGATGAAACTTGTATAATGAGTAGTTGTGTGAAACCTTTAGTACAAACCAAGAACAATCCAGTGGTTCTTTTGCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCACATATCCCCTGCTTGAAGAGGCTGGGTTGGAGGCTTGGGCAATTGATGTGCTCGGGTGGGGCTTCTCCGATTTAGAAAGGCTTCCACCATGCAATCCGGAATCAAAGCGTCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCAATGATATTAGTTGGACCTAGCCTTGGTGCTTCTGTTGCAATTGACTTTGCAGTCAGTTATCCGTTTGCTGTTGAAAAGCTGGTTTTGATCAATGCAAGTGTGTACTCAGAAGGCAGCAAACTTGCAGAATTACCTAGAATATTAGCCTATGCTGGGGTTTCCTTGTTGAGGAGCATCCCTCTACGGCTTTATGCTAATACACTGGCCTTCAATGACATTTCATTAGCCACAACCTTTGATTGGACTAATGTCGGTCGCTTACACTGTTTGCTGCCTTGGTGGAAAGATGCAACAGTAAGTTTCATGAGTAGTGGGGGCTATAATGTTGTTGCACAAATAAAACAGGTGAAACAGAAAGCACTTATCATCTGCAGTGAGGAAGATCGAATTATCACCTACAAGCAAACACTGAGACTACGATGTGAACTACCCTCGGCAATCATGCGGCTAATACCGGATGGTGGTCACCTTCCTCATGTTGACAATCCCACCTCTGTTGCAAAGCTAATTGCAGGGTTTGCTCGCAATGACCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

350

Amino Acids

38.61

Weight (kDa)

8.67

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	4 cut(s)	84, 126, 152, 955
AclWI	GGATC	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	291, 614
AfiI	CCNNNNNNNGG	5 cut(s)	533, 663, 678, 750, 971
AgsI	TTSAA	3 cut(s)	374, 584, 721
AluBI	AGCT	4 cut(s)	71, 90, 589, 1015
AluI	AGCT	4 cut(s)	71, 90, 589, 1015
Alw21I	GWGCWC	2 cut(s)	359, 411
Alw26I	GTCTC	1 cut(s)	916
Alw44I	GTGCAC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	506, 714
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	53, 624, 781
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	6 cut(s)	27, 73, 464, 868, 895, 968
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	359, 411
BbvI	GCAGC	3 cut(s)	65, 636, 768
BccI	CCATC	2 cut(s)	232, 962
BceAI	ACGGC	2 cut(s)	139, 710
BclI	TGATCA	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	916
BfaI	CTAG	2 cut(s)	528, 645
BfmI	CTRYAG	1 cut(s)	880
BisI	GCNGC	4 cut(s)	54, 625, 782, 956
BlsI	GCNGC	4 cut(s)	55, 626, 783, 957
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	149, 227
BmsI	GCATC	3 cut(s)	113, 693, 787
BoxI	GACNNNNGTC	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	532, 785, 942
BsaWI	WCCGGW	2 cut(s)	454, 964
Bsc4I	CCNNNNNNNGG	5 cut(s)	533, 663, 678, 750, 971
Bse1I	ACTGG	2 cut(s)	308, 717
Bse3DI	GCAATG	2 cut(s)	322, 1042
BseAI	TCCGGA	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	532, 785, 942
BseGI	GGATG	3 cut(s)	128, 684, 973
BseLI	CCNNNNNNNGG	5 cut(s)	533, 663, 678, 750, 971
BseMI	GCAATG	2 cut(s)	322, 1042
BseMII	CTCAG	3 cut(s)	224, 630, 911
BseNI	ACTGG	2 cut(s)	308, 717
BseRI	GAGGAG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	65, 636, 768
BseYI	CCCAGC	2 cut(s)	380, 662
Bsh1285I	CGRYCG	1 cut(s)	766
BshFI	GGCC	2 cut(s)	508, 716
BsiEI	CGRYCG	1 cut(s)	766
BsiHKAI	GWGCWC	2 cut(s)	359, 411
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	106, 455, 965
BslI	CCNNNNNNNGG	5 cut(s)	533, 663, 678, 750, 971
BsmAI	GTCTC	1 cut(s)	916
BsnI	GGCC	2 cut(s)	508, 716
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	359, 411
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	108, 180, 597, 892
BspACI	CCGC	4 cut(s)	84, 126, 152, 955
BspANI	GGCC	2 cut(s)	508, 716
BspCNI	CTCAG	3 cut(s)	223, 629, 912
BspEI	TCCGGA	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	2 cut(s)	149, 227
BspMAI	CTGCAG	1 cut(s)	884
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	322, 1042
BsrI	ACTGG	2 cut(s)	308, 717
BssECI	CCNNGG	3 cut(s)	532, 785, 942
BssMI	GATC	4 cut(s)	108, 180, 597, 892
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	532, 785
Bst4CI	ACNGT	4 cut(s)	335, 776, 805, 1043
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstC8I	GCNNGC	2 cut(s)	69, 1033
BstDEI	CTNAG	4 cut(s)	91, 210, 616, 920
BstEII	GGTNACC	1 cut(s)	974
BstENI	CCTNNNNNAGG	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	128, 684, 973
BstKTI	GATC	4 cut(s)	111, 183, 600, 895
BstMAI	GTCTC	1 cut(s)	916
BstMBI	GATC	4 cut(s)	108, 180, 597, 892
BstMCI	CGRYCG	1 cut(s)	766
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 1028
BstPAI	GACNNNNGTC	1 cut(s)	758
BstPI	GGTNACC	1 cut(s)	974
BstSFI	CTRYAG	1 cut(s)	880
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	65, 636, 768
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	508, 716
BtsCI	GGATG	3 cut(s)	128, 684, 973
BtsI	GCAGTG	3 cut(s)	26, 63, 889
BtsIMutI	CAGTG	7 cut(s)	26, 63, 315, 710, 772, 889, 917
Cac8I	GCNNGC	2 cut(s)	69, 1033
CciI	TCATGA	1 cut(s)	813
Cfr13I	GGNCC	1 cut(s)	524
CseI	GACGC	2 cut(s)	73, 455
Csp6I	GTAC	2 cut(s)	290, 613
CspCI	CAANNNNNGTGG	4 cut(s)	727, 762, 988, 1023
CviAII	CATG	4 cut(s)	447, 814, 952, 986
CviQI	GTAC	2 cut(s)	290, 613
DdeI	CTNAG	4 cut(s)	91, 210, 616, 920
DpnI	GATC	4 cut(s)	110, 182, 599, 894
DpnII	GATC	4 cut(s)	108, 180, 597, 892
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	532, 785
Eco47I	GGWCC	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	974
EcoNI	CCTNNNNNAGG	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	974
EcoT14I	CCWWGG	2 cut(s)	532, 785
ErhI	CCWWGG	2 cut(s)	532, 785
FaeI	CATG	4 cut(s)	450, 817, 955, 989
FaiI	YATR	9 cut(s)	263, 361, 448, 660, 702, 815, 831, 953, 987
FatI	CATG	4 cut(s)	446, 813, 951, 985
FauI	CCCGC	2 cut(s)	77, 159
FbaI	TGATCA	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	54, 625, 782, 956
FokI	GGATG	3 cut(s)	135, 671, 980
Fsp4HI	GCNGC	4 cut(s)	54, 625, 782, 956
FspBI	CTAG	2 cut(s)	528, 645
GluI	GCNGC	4 cut(s)	54, 625, 782, 956
GsaI	CCCAGC	2 cut(s)	384, 666
HaeIII	GGCC	2 cut(s)	508, 716
HapII	CCGG	3 cut(s)	106, 455, 965
HgaI	GACGC	2 cut(s)	73, 455
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	450, 817, 955, 989
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	3 cut(s)	106, 455, 965
HphI	GGTGA	6 cut(s)	27, 73, 464, 868, 895, 968
Hpy166II	GTNNAC	4 cut(s)	357, 613, 935, 991
Hpy188I	TCNGA	5 cut(s)	213, 237, 427, 503, 619
Hpy188III	TCNNGA	3 cut(s)	175, 455, 814
Hpy8I	GTNNAC	4 cut(s)	357, 613, 935, 991
HpyAV	CCTTC	4 cut(s)	498, 614, 727, 989
HpyCH4III	ACNGT	4 cut(s)	335, 776, 805, 1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 1028
HpyF3I	CTNAG	4 cut(s)	91, 210, 616, 920
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	450, 817, 955, 989
Kpn2I	TCCGGA	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	108, 180, 597, 892
LmnI	GCTCC	3 cut(s)	87, 231, 681
Lsp1109I	GCAGC	3 cut(s)	65, 636, 768
LweI	GCATC	3 cut(s)	113, 693, 787
MaeI	CTAG	2 cut(s)	528, 645
MaeIII	GTNAC	4 cut(s)	61, 94, 140, 974
MalI	GATC	4 cut(s)	110, 182, 599, 894
MboI	GATC	4 cut(s)	108, 180, 597, 892
MboII	GAAGA	7 cut(s)	15, 88, 103, 152, 190, 386, 902
MfeI	CAATTG	2 cut(s)	399, 549
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	359, 411
MluCI	AATT	5 cut(s)	399, 549, 638, 897, 1017
MmeI	TCCRAC	2 cut(s)	366, 502
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	438
MspI	CCGG	3 cut(s)	106, 455, 965
MunI	CAATTG	2 cut(s)	399, 549
MwoI	GCNNNNNNNGC	2 cut(s)	545, 1028
NdeII	GATC	4 cut(s)	108, 180, 597, 892
NlaIII	CATG	4 cut(s)	450, 817, 955, 989
NlaIV	GGNNCC	2 cut(s)	149, 227
NmeAIII	GCCGAG	1 cut(s)	923
NmuCI	GTSAC	2 cut(s)	61, 974
PagI	TCATGA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 1039
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	55, 626, 783, 957
PshAI	GACNNNNGTC	1 cut(s)	758
PspEI	GGTNACC	1 cut(s)	974
PspFI	CCCAGC	2 cut(s)	380, 662
PspN4I	GGNNCC	2 cut(s)	149, 227
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	2 cut(s)	291, 614
RsaNI	GTAC	2 cut(s)	290, 613
SatI	GCNGC	4 cut(s)	54, 625, 782, 956
Sau3AI	GATC	4 cut(s)	108, 180, 597, 892
Sau96I	GGNCC	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	359, 411
SfaNI	GCATC	3 cut(s)	113, 693, 787
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	5 cut(s)	399, 549, 638, 897, 1017
SsiI	CCGC	4 cut(s)	84, 126, 152, 955
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	2 cut(s)	528, 645
StyI	CCWWGG	2 cut(s)	532, 785
TaaI	ACNGT	4 cut(s)	335, 776, 805, 1043
TaqI	TCGA	2 cut(s)	174, 895
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	5 cut(s)	399, 549, 638, 897, 1017
TatI	WGTACW	2 cut(s)	289, 612
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	1 cut(s)	458
TscAI	CASTG	7 cut(s)	33, 63, 315, 717, 779, 889, 924
TseFI	GTSAC	2 cut(s)	61, 974
TseI	GCWGC	3 cut(s)	53, 624, 781
Tsp45I	GTSAC	2 cut(s)	61, 974
TspDTI	ATGAA	3 cut(s)	267, 720, 802
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	7 cut(s)	33, 63, 315, 717, 779, 889, 924
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	528, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.