Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4823652 .. 4827069

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1059300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGCCGCTAATGTGGTGTTCTGCACCACCGTCGCCACCGCCGGAAGCGATGGTGGGTACGTTAATGGCAAAGAAAGATGGAAGCTCTAGGAGTGTGGTGATCAATATGAGGGGTGCAGGTACAAATAATGGGTTCCCATCGTTCCTTCCAAAGGAGGTTGAGAAAATTAAGGACCCATATGCCAGAAAGTTGGCTCAGAGGATGGAGAGGCTCCCTGTGTCGATTGGGTCGTCGGAAAGTTGTATCATGAGTAGTTGTGTAAGGCCTCTAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCGTACCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGAAAGGTGTCCACCATGCAGCGCGGCAACCAAGCGGCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGACCGATGGTATTAGTTGGACCAAGCCTAGGTGGTTCTGTTGCAATTGACTTTGCATACCACTATCCAGTAGCTGTTGAAAAGCTGGTTTTAATCAATGCAAGCGTCTACGCAGAAGGCACCGGATACATGGCAAAGTTACCTAAAGCTGCGACCTACGCTGGGGTTTCTTTATTGAAGAGCACCCCTCTACGCTTCTACGCAAATATGCTGGCCTTCAACGACATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGACGCTTACACTGTCTGCTGCCTTGGTGGAAAGATGCAACAGTCAGTTTTATGAGTAGCGGAGGCTATAATGTCGTTTCCCAAATAAAACAGGTGAAGCAGAAAGTACTAGTGATTTGCAGCGAGCAAGACAATATTATCAGCTACAAACAAATATTGAGGCTGCGTTGTGAGCTTTCGTCTGCAATCATGCGGCTAATACCGGATAGCGGTCATCTCCCTCACGTTGATAATCCTGCCTCCATTGCAAAACTAATTGCAGGGTTTGCTCGGAACGGTCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

346

Amino Acids

38.15

Weight (kDa)

9.01

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	97 - 329	3.6e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	99 - 334	6.7e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	99 - 311	5e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	2 cut(s)	344, 440
AciI	CCGC	7 cut(s)	8, 41, 440, 451, 810, 943, 960
AfaI	GTAC	4 cut(s)	61, 124, 347, 858
AfiI	CCNNNNNNNGG	5 cut(s)	154, 518, 651, 738, 959
AgsI	TTSAA	4 cut(s)	359, 569, 667, 709
AhlI	ACTAGT	1 cut(s)	859
AluBI	AGCT	7 cut(s)	87, 563, 574, 638, 725, 894, 925
AluI	AGCT	7 cut(s)	87, 563, 574, 638, 725, 894, 925
Alw21I	GWGCWC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	266, 363, 702
ApeKI	GCWGC	5 cut(s)	435, 638, 769, 870, 913
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	344, 440
AspS9I	GGNCC	2 cut(s)	175, 509
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	112, 449, 856
AvaII	GGWCC	2 cut(s)	175, 509
AvrII	CCTAGG	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	5 cut(s)	447, 625, 756, 882, 900
BccI	CCATC	5 cut(s)	46, 74, 148, 199, 490
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciVI	GTATCC	1 cut(s)	608
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	367
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	3 cut(s)	90, 518, 860
BfuAI	ACCTGC	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	9 cut(s)	8, 436, 441, 452, 639, 770, 871, 914, 944
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	9 cut(s)	9, 437, 442, 453, 640, 771, 872, 915, 945
BmcAI	AGTACT	1 cut(s)	858
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	2 cut(s)	175, 509
BmgT120I	GGNCC	2 cut(s)	175, 509
BmiI	GGNNCC	4 cut(s)	137, 177, 215, 610
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	463, 775
BoxI	GACNNNNGTC	1 cut(s)	746
BpiI	GAAGAC	1 cut(s)	496
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	517, 773
BsaWI	WCCGGW	3 cut(s)	292, 611, 952
Bsc4I	CCNNNNNNNGG	5 cut(s)	154, 518, 651, 738, 959
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	307, 993
BseDI	CCNNGG	2 cut(s)	517, 773
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	5 cut(s)	154, 518, 651, 738, 959
BseMI	GCAATG	2 cut(s)	307, 993
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	5 cut(s)	447, 625, 756, 882, 900
BseYI	CCCAGC	1 cut(s)	650
BsgI	GTGCAG	2 cut(s)	9, 138
Bsh1236I	CGCG	2 cut(s)	344, 440
Bsh1285I	CGRYCG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	268, 365, 704
BshNI	GGYRCC	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	5 cut(s)	44, 293, 366, 612, 953
BslI	CCNNNNNNNGG	5 cut(s)	154, 518, 651, 738, 959
BsnI	GGCC	3 cut(s)	268, 365, 704
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	2 cut(s)	102, 285
BspACI	CCGC	7 cut(s)	8, 41, 440, 451, 810, 943, 960
BspANI	GGCC	3 cut(s)	268, 365, 704
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	344, 440
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	137, 177, 215, 610
BspMI	ACCTGC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	307, 993
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	517, 773
BssMI	GATC	2 cut(s)	102, 285
BssT1I	CCWWGG	2 cut(s)	517, 773
Bst4CI	ACNGT	5 cut(s)	33, 320, 764, 793, 1028
Bst6I	CTCTTC	2 cut(s)	354, 662
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	592, 702, 875
BstDEI	CTNAG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	344, 440
BstHHI	GCGC	2 cut(s)	344, 440
BstKTI	GATC	2 cut(s)	105, 288
BstMBI	GATC	2 cut(s)	102, 285
BstMCI	CGRYCG	1 cut(s)	1030
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 922, 995, 1016
BstPAI	GACNNNNGTC	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	365
BstUI	CGCG	2 cut(s)	344, 440
BstV1I	GCAGC	5 cut(s)	447, 625, 756, 882, 900
BstV2I	GAAGAC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	268, 365, 704
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	760
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	592, 702, 875
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	2 cut(s)	344, 440
Cfr13I	GGNCC	2 cut(s)	175, 509
CseI	GACGC	2 cut(s)	583, 762
Csp6I	GTAC	4 cut(s)	60, 123, 346, 857
CviAII	CATG	4 cut(s)	250, 432, 619, 940
CviQI	GTAC	4 cut(s)	60, 123, 346, 857
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	104, 287
DpnII	GATC	2 cut(s)	102, 285
Eam1104I	CTCTTC	2 cut(s)	354, 662
EarI	CTCTTC	2 cut(s)	354, 662
Eco130I	CCWWGG	2 cut(s)	517, 773
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	175, 509
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	517, 773
ErhI	CCWWGG	2 cut(s)	517, 773
FaeI	CATG	4 cut(s)	253, 435, 622, 943
FatI	CATG	4 cut(s)	249, 431, 618, 939
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	9 cut(s)	8, 436, 441, 452, 639, 770, 871, 914, 944
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	9 cut(s)	8, 436, 441, 452, 639, 770, 871, 914, 944
FspBI	CTAG	3 cut(s)	90, 518, 860
GlaI	GCGC	2 cut(s)	343, 439
GluI	GCNGC	9 cut(s)	8, 436, 441, 452, 639, 770, 871, 914, 944
GsaI	CCCAGC	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	268, 365, 704
HapII	CCGG	5 cut(s)	44, 293, 366, 612, 953
HgaI	GACGC	2 cut(s)	583, 762
HhaI	GCGC	2 cut(s)	344, 440
Hin1II	CATG	4 cut(s)	253, 435, 622, 943
Hin6I	GCGC	2 cut(s)	342, 438
HinP1I	GCGC	2 cut(s)	342, 438
HpaII	CCGG	5 cut(s)	44, 293, 366, 612, 953
HphI	GGTGA	3 cut(s)	112, 449, 856
Hpy166II	GTNNAC	2 cut(s)	428, 598
Hpy188I	TCNGA	6 cut(s)	201, 238, 412, 488, 752, 1023
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	428, 598
Hpy99I	CGWCG	2 cut(s)	37, 238
HpyAV	CCTTC	3 cut(s)	158, 599, 715
HpyCH4III	ACNGT	5 cut(s)	33, 320, 764, 793, 1028
HpyCH4IV	ACGT	2 cut(s)	62, 975
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 922, 995, 1016
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	62, 975
Hsp92II	CATG	4 cut(s)	253, 435, 622, 943
HspAI	GCGC	2 cut(s)	342, 438
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	102, 285
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	5 cut(s)	447, 625, 756, 882, 900
LweI	GCATC	2 cut(s)	463, 775
MaeI	CTAG	3 cut(s)	90, 518, 860
MaeII	ACGT	2 cut(s)	62, 975
MaeIII	GTNAC	1 cut(s)	627
MalI	GATC	2 cut(s)	104, 287
MboI	GATC	2 cut(s)	102, 285
MboII	GAAGA	3 cut(s)	371, 501, 679
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	3 cut(s)	168, 534, 1005
MmeI	TCCRAC	4 cut(s)	216, 351, 487, 730
MseI	TTAA	3 cut(s)	65, 171, 581
MspI	CCGG	5 cut(s)	44, 293, 366, 612, 953
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	2 cut(s)	344, 440
MwoI	GCNNNNNNNGC	4 cut(s)	647, 922, 995, 1016
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	102, 285
NlaIII	CATG	4 cut(s)	253, 435, 622, 943
NlaIV	GGNNCC	4 cut(s)	137, 177, 215, 610
PagI	TCATGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 1027
PkrI	GCNGC	9 cut(s)	9, 437, 442, 453, 640, 771, 872, 915, 945
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	650
PspN4I	GGNNCC	4 cut(s)	137, 177, 215, 610
PspPI	GGNCC	2 cut(s)	175, 509
PspPPI	RGGWCCY	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	4 cut(s)	61, 124, 347, 858
RsaNI	GTAC	4 cut(s)	60, 123, 346, 857
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	65, 171, 581
SatI	GCNGC	9 cut(s)	8, 436, 441, 452, 639, 770, 871, 914, 944
Sau3AI	GATC	2 cut(s)	102, 285
Sau96I	GGNCC	2 cut(s)	175, 509
ScaI	AGTACT	1 cut(s)	858
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	463, 775
SinI	GGWCC	2 cut(s)	175, 509
SpeI	ACTAGT	1 cut(s)	859
Sse9I	AATT	3 cut(s)	168, 534, 1005
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	7 cut(s)	8, 41, 440, 451, 810, 943, 960
SspI	AATATT	2 cut(s)	886, 906
SspMI	CTAG	3 cut(s)	90, 518, 860
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	2 cut(s)	517, 773
TaaI	ACNGT	5 cut(s)	33, 320, 764, 793, 1028
TaiI	ACGT	2 cut(s)	65, 978
TaqI	TCGA	1 cut(s)	224
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	3 cut(s)	168, 534, 1005
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	4 cut(s)	10, 443, 454, 946
Tru1I	TTAA	3 cut(s)	65, 171, 581
Tru9I	TTAA	3 cut(s)	65, 171, 581
TscAI	CASTG	1 cut(s)	767
TseI	GCWGC	5 cut(s)	435, 638, 769, 870, 913
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	175, 509
XagI	CCTNNNNNAGG	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	3 cut(s)	90, 518, 860
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.