Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4797178 .. 4800908

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1058900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATGCCGCTAATGTGGTGTTCTGCGCCACCGTCGCCACCGCCGGAAGCAGTGGTGGGTACGTTAATGGCAAAGAAAGATGGAAGCTTTAGGAGTGTGGTGATCAATATGAGGGGTGCAGGTACAAATAATGGGTTCCCATCGTTCCTTCCAAAGGAGGTTGAGAAAATTAAGGACCCATATGCCAGAAAGTTGGCTCAGAGGATGGAGAGGCTCCCTGTGTCGATTGGGTCGTCGGAAAGTTGTATCATGAGTAGTTGTGTAAGGCCTCTAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCGTACCCTCTGCTTGAAGAGGCCGGTTTGGAGGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGAAAGGTGTCCACCATGTAGCGCGGCAACCAAGCGGCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGACCGATGGTATTAGTTGGGCCAAGCCTCGGTGGTTCTGTTGCAATTGACTTTGCATACCACTATCCAGTAGCTGTTGAAAAGCTGGTTTTAATCAACGCAAGCGTCTACGCAGAAGGCACCGGAGACATGGCAAAGCTACCTAAAGCTGCGGCCTACGCTGGGGTTGGTGTTTCTTTATTGAAGAGCACCCCTCTACGCTTCTACGCAAATATGCTGGCCTTCAATGACATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGACGCTTACACTGTCTGCTGCCTTGGTGGAAAGATGCAACAGTCAGTTTTATGAGTAGCGGAGGCTATAATGTCGTTTCCCAAATAAAACAGGTGAAGCAGAAAGTACTAGTGATTTGCAGCGAGCAAGACAATATTATCAGCTACAAACAAATATTGAGGCTGCGTTGTGAGCTTTCGTCTGCAATCATGCGGCTAATACCGGATAGCGGACATCTCCCTCACGTTGATAATCCCGCCTCCATCGCAAAACTAATTGCAGGGTTTGCTCGGAACAGGTCGTTGCTGAGAGAATCCCTCCTCTGGTCCTTTGTGGCAGAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

361

Amino Acids

39.85

Weight (kDa)

8.89

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	97 - 197	6e-09	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	99 - 336	4.1e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	99 - 202	4.5e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	2 cut(s)	344, 440
AciI	CCGC	9 cut(s)	8, 41, 440, 451, 641, 816, 949, 966, 993
AfaI	GTAC	4 cut(s)	61, 124, 347, 864
AfiI	CCNNNNNNNGG	6 cut(s)	154, 518, 651, 744, 965, 1059
AgsI	TTSAA	4 cut(s)	359, 569, 673, 715
AhlI	ACTAGT	1 cut(s)	865
AluBI	AGCT	8 cut(s)	87, 563, 574, 628, 638, 731, 900, 931
AluI	AGCT	8 cut(s)	87, 563, 574, 628, 638, 731, 900, 931
Alw21I	GWGCWC	1 cut(s)	680
Alw26I	GTCTC	1 cut(s)	609
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	5 cut(s)	266, 363, 509, 642, 708
ApeKI	GCWGC	4 cut(s)	638, 775, 876, 919
AspLEI	GCGC	3 cut(s)	28, 344, 440
AspS9I	GGNCC	3 cut(s)	175, 509, 1062
AsuHPI	GGTGA	3 cut(s)	112, 449, 862
AvaII	GGWCC	2 cut(s)	175, 1062
BanI	GGYRCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	4 cut(s)	625, 762, 888, 906
BccI	CCATC	5 cut(s)	74, 148, 199, 490, 1007
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	609
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	1 cut(s)	866
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	9 cut(s)	8, 441, 452, 639, 642, 776, 877, 920, 950
BlsI	GCNGC	9 cut(s)	9, 442, 453, 640, 643, 777, 878, 921, 951
BmcAI	AGTACT	1 cut(s)	864
Bme18I	GGWCC	2 cut(s)	175, 1062
BmgT120I	GGNCC	3 cut(s)	175, 509, 1062
BmiI	GGNNCC	4 cut(s)	137, 177, 215, 610
BmsI	GCATC	2 cut(s)	463, 781
BoxI	GACNNNNGTC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	496
BplI	GAGNNNNNCTC	4 cut(s)	667, 699, 1038, 1070
BsaJI	CCNNGG	2 cut(s)	517, 779
BsaWI	WCCGGW	3 cut(s)	292, 611, 958
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 518, 651, 744, 965, 1059
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	517, 779
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	6 cut(s)	154, 518, 651, 744, 965, 1059
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	212, 1034
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	2 cut(s)	293, 1046
BseXI	GCAGC	4 cut(s)	625, 762, 888, 906
BseYI	CCCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	344, 440
BshFI	GGCC	5 cut(s)	268, 365, 511, 644, 710
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	680
BsiSI	CCGG	5 cut(s)	44, 293, 366, 612, 959
BslI	CCNNNNNNNGG	6 cut(s)	154, 518, 651, 744, 965, 1059
BsmAI	GTCTC	1 cut(s)	609
BsnI	GGCC	5 cut(s)	268, 365, 511, 644, 710
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	2 cut(s)	102, 285
BspACI	CCGC	9 cut(s)	8, 41, 440, 451, 641, 816, 949, 966, 993
BspANI	GGCC	5 cut(s)	268, 365, 511, 644, 710
BspCNI	CTCAG	2 cut(s)	211, 1035
BspFNI	CGCG	2 cut(s)	344, 440
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	137, 177, 215, 610
BspMI	ACCTGC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	517, 779
BssMI	GATC	2 cut(s)	102, 285
BssT1I	CCWWGG	1 cut(s)	779
Bst4CI	ACNGT	4 cut(s)	33, 320, 770, 799
Bst6I	CTCTTC	2 cut(s)	354, 668
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstC8I	GCNNGC	3 cut(s)	592, 708, 881
BstDEI	CTNAG	2 cut(s)	198, 1043
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	344, 440
BstHHI	GCGC	3 cut(s)	28, 344, 440
BstKTI	GATC	2 cut(s)	105, 288
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	2 cut(s)	102, 285
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 647, 928, 1001, 1022
BstPAI	GACNNNNGTC	1 cut(s)	752
BstUI	CGCG	2 cut(s)	344, 440
BstV1I	GCAGC	4 cut(s)	625, 762, 888, 906
BstV2I	GAAGAC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuRI	GGCC	5 cut(s)	268, 365, 511, 644, 710
BtgZI	GCGATG	1 cut(s)	985
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 766
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	592, 708, 881
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	3 cut(s)	28, 344, 440
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	175, 509, 1062
CseI	GACGC	2 cut(s)	583, 768
Csp6I	GTAC	4 cut(s)	60, 123, 346, 863
CviAII	CATG	4 cut(s)	250, 432, 619, 946
CviQI	GTAC	4 cut(s)	60, 123, 346, 863
DdeI	CTNAG	2 cut(s)	198, 1043
DpnI	GATC	2 cut(s)	104, 287
DpnII	GATC	2 cut(s)	102, 285
Eam1104I	CTCTTC	2 cut(s)	354, 668
EarI	CTCTTC	2 cut(s)	354, 668
Eco130I	CCWWGG	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	175, 1062
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	4 cut(s)	253, 435, 622, 949
FatI	CATG	4 cut(s)	249, 431, 618, 945
FauI	CCCGC	1 cut(s)	1000
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	9 cut(s)	8, 441, 452, 639, 642, 776, 877, 920, 950
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	9 cut(s)	8, 441, 452, 639, 642, 776, 877, 920, 950
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	3 cut(s)	27, 343, 439
GluI	GCNGC	9 cut(s)	8, 441, 452, 639, 642, 776, 877, 920, 950
GsaI	CCCAGC	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	268, 365, 511, 644, 710
HapII	CCGG	5 cut(s)	44, 293, 366, 612, 959
HgaI	GACGC	2 cut(s)	583, 768
HhaI	GCGC	3 cut(s)	28, 344, 440
Hin1II	CATG	4 cut(s)	253, 435, 622, 949
Hin6I	GCGC	3 cut(s)	26, 342, 438
HinP1I	GCGC	3 cut(s)	26, 342, 438
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	1 cut(s)	1049
HpaII	CCGG	5 cut(s)	44, 293, 366, 612, 959
HphI	GGTGA	3 cut(s)	112, 449, 862
Hpy166II	GTNNAC	2 cut(s)	428, 598
Hpy188I	TCNGA	6 cut(s)	201, 238, 412, 488, 758, 1029
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	428, 598
Hpy99I	CGWCG	2 cut(s)	37, 238
HpyAV	CCTTC	3 cut(s)	158, 599, 721
HpyCH4III	ACNGT	4 cut(s)	33, 320, 770, 799
HpyCH4IV	ACGT	2 cut(s)	62, 981
HpyCH4V	TGCA	7 cut(s)	119, 533, 545, 794, 876, 941, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 647, 928, 1001, 1022
HpyF3I	CTNAG	2 cut(s)	198, 1043
HpySE526I	ACGT	2 cut(s)	62, 981
Hsp92II	CATG	4 cut(s)	253, 435, 622, 949
HspAI	GCGC	3 cut(s)	26, 342, 438
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	102, 285
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	4 cut(s)	625, 762, 888, 906
LweI	GCATC	2 cut(s)	463, 781
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	2 cut(s)	62, 981
MalI	GATC	2 cut(s)	104, 287
MboI	GATC	2 cut(s)	102, 285
MboII	GAAGA	3 cut(s)	371, 501, 685
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	4 cut(s)	168, 534, 1011, 1076
MmeI	TCCRAC	2 cut(s)	216, 736
MseI	TTAA	3 cut(s)	65, 171, 581
MspI	CCGG	5 cut(s)	44, 293, 366, 612, 959
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	2 cut(s)	344, 440
MwoI	GCNNNNNNNGC	5 cut(s)	34, 647, 928, 1001, 1022
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	102, 285
NlaIII	CATG	4 cut(s)	253, 435, 622, 949
NlaIV	GGNNCC	4 cut(s)	137, 177, 215, 610
PagI	TCATGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	1049
PkrI	GCNGC	9 cut(s)	9, 442, 453, 640, 643, 777, 878, 921, 951
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	650
PspN4I	GGNNCC	4 cut(s)	137, 177, 215, 610
PspPI	GGNCC	3 cut(s)	175, 509, 1062
PspPPI	RGGWCCY	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	4 cut(s)	61, 124, 347, 864
RsaNI	GTAC	4 cut(s)	60, 123, 346, 863
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	65, 171, 581
SatI	GCNGC	9 cut(s)	8, 441, 452, 639, 642, 776, 877, 920, 950
Sau3AI	GATC	2 cut(s)	102, 285
Sau96I	GGNCC	3 cut(s)	175, 509, 1062
ScaI	AGTACT	1 cut(s)	864
SduI	GDGCHC	1 cut(s)	680
SfaNI	GCATC	2 cut(s)	463, 781
SinI	GGWCC	2 cut(s)	175, 1062
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	4 cut(s)	168, 534, 1011, 1076
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	9 cut(s)	8, 41, 440, 451, 641, 816, 949, 966, 993
SspI	AATATT	2 cut(s)	892, 912
SspMI	CTAG	1 cut(s)	866
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	4 cut(s)	33, 320, 770, 799
TaiI	ACGT	2 cut(s)	65, 984
TaqI	TCGA	1 cut(s)	224
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	4 cut(s)	168, 534, 1011, 1076
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	5 cut(s)	10, 443, 454, 644, 952
TfiI	GAWTC	1 cut(s)	1049
Tru1I	TTAA	3 cut(s)	65, 171, 581
Tru9I	TTAA	3 cut(s)	65, 171, 581
TscAI	CASTG	2 cut(s)	57, 773
TseI	GCWGC	4 cut(s)	638, 775, 876, 919
TspDTI	ATGAA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	57, 773
VpaK11BI	GGWCC	2 cut(s)	175, 1062
XagI	CCTNNNNNAGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	1 cut(s)	866
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.