Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4804664 .. 4807338

Gene Structure 2675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1059000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATGCCGCTAATGTGGTGTTCTGCCCCACTGTCGCCACCGCCGGAAGCGGTGGTGGGTACGTTAATGGCAAAGAAAGATGGAAGCTTTAGGAGTGTGGTGATCAATATGAGGGGTGCAGGTACAAATAATGGGTTCCCATCGTTCCTTCCAAAGGAGGTTGAGAAAATTAAGGACCCATATGCCAGAACGTTGGCTCAGAGGATGGAGAGGCTCCCTGTGCCGATTGCGTCGTCGGAAAGTTGTATCATGAGTAGTTGTGTAAGGCCACGAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGTGCGTACCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGTTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGGTGATGGGTTTGTGACTATGACAGGAGAGGATATTGGAGATCAAATATATACGGGCTGTGGTCCCACGGAAAGAAGATTCACGGCGGAGATGAAAAAAAGAAAGAGAACCGACACAACTTTTCGTATCGATTCCCACAGACGGCGCCAAATGTTGATGCACAAAACCGGAGGTCTTGGAACAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

202

Amino Acids

22.42

Weight (kDa)

8.49

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	561
AciI	CCGC	4 cut(s)	8, 41, 50, 503
AclI	AACGTT	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	562
AfaI	GTAC	3 cut(s)	61, 124, 347
AfiI	CCNNNNNNNGG	2 cut(s)	154, 558
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
AoxI	GGCC	2 cut(s)	266, 363
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	175, 479
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	112, 431
AvaII	GGWCC	2 cut(s)	175, 479
BanI	GGYRCC	1 cut(s)	561
BccI	CCATC	4 cut(s)	74, 148, 199, 416
BceAI	ACGGC	2 cut(s)	516, 575
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	2 cut(s)	175, 479
BmgT120I	GGNCC	2 cut(s)	175, 479
BmiI	GGNNCC	5 cut(s)	137, 177, 215, 481, 563
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	2 cut(s)	292, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 558
Bse3DI	GCAATG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	154, 558
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	268, 365
BshNI	GGYRCC	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	44, 293, 366, 585
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	154, 558
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	268, 365
Bsp143I	GATC	3 cut(s)	102, 285, 457
BspACI	CCGC	4 cut(s)	8, 41, 50, 503
BspANI	GGCC	2 cut(s)	268, 365
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	137, 177, 215, 481, 563
BspMI	ACCTGC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	102, 285, 457
BssNI	GRCGYC	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	33, 320
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	3 cut(s)	105, 288, 460
BstMBI	GATC	3 cut(s)	102, 285, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	268, 365
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	175, 479
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	60, 123, 346
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	87, 197, 214, 268, 365, 377, 405, 474
CviKI_1	RGCY	8 cut(s)	87, 197, 214, 268, 365, 377, 405, 474
CviQI	GTAC	3 cut(s)	60, 123, 346
DdeI	CTNAG	1 cut(s)	198
DinI	GGCGCC	1 cut(s)	563
DpnI	GATC	3 cut(s)	104, 287, 459
DpnII	GATC	3 cut(s)	102, 285, 457
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	175, 479
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	175
EgeI	GGCGCC	1 cut(s)	563
EheI	GGCGCC	1 cut(s)	563
FaeI	CATG	1 cut(s)	253
FaiI	YATR	7 cut(s)	110, 181, 183, 251, 437, 466, 468
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	268, 365
HapII	CCGG	4 cut(s)	44, 293, 366, 585
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	2 cut(s)	495, 548
HpaII	CCGG	4 cut(s)	44, 293, 366, 585
HphI	GGTGA	2 cut(s)	112, 431
Hpy188I	TCNGA	3 cut(s)	201, 238, 412
Hpy188III	TCNNGA	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	235, 238
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	33, 320
HpyCH4IV	ACGT	3 cut(s)	62, 191, 602
HpyCH4V	TGCA	2 cut(s)	119, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	3 cut(s)	62, 191, 602
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	562
KasI	GGCGCC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	102, 285, 457
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	9 cut(s)	57, 105, 199, 231, 306, 365, 379, 426, 598
LweI	GCATC	1 cut(s)	564
MaeII	ACGT	3 cut(s)	62, 191, 602
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	3 cut(s)	104, 287, 459
MboI	GATC	3 cut(s)	102, 285, 457
MboII	GAAGA	2 cut(s)	371, 504
MluCI	AATT	1 cut(s)	168
Mly113I	GGCGCC	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	216, 351
MseI	TTAA	2 cut(s)	65, 171
MspI	CCGG	4 cut(s)	44, 293, 366, 585
MspR9I	CCNGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	3 cut(s)	102, 285, 457
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	5 cut(s)	137, 177, 215, 481, 563
NmuCI	GTSAC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	495, 548
PkrI	GCNGC	1 cut(s)	9
PluTI	GGCGCC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	5 cut(s)	137, 177, 215, 481, 563
PspPI	GGNCC	2 cut(s)	175, 479
PspPPI	RGGWCCY	1 cut(s)	175
RsaI	GTAC	3 cut(s)	61, 124, 347
RsaNI	GTAC	3 cut(s)	60, 123, 346
SaqAI	TTAA	2 cut(s)	65, 171
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	102, 285, 457
Sau96I	GGNCC	2 cut(s)	175, 479
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	9 cut(s)	65, 89, 124, 162, 194, 341, 421, 592, 605
SfaNI	GCATC	1 cut(s)	564
SfoI	GGCGCC	1 cut(s)	563
SinI	GGWCC	2 cut(s)	175, 479
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	4 cut(s)	8, 41, 50, 503
SspDI	GGCGCC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	33, 320
TaiI	ACGT	3 cut(s)	65, 194, 605
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	495, 548
Tru1I	TTAA	2 cut(s)	65, 171
Tru9I	TTAA	2 cut(s)	65, 171
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	175, 479
XagI	CCTNNNNNAGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.