Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Reverse (-)

4176695 .. 4179798

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATGCCGCTAACGTGGTGTTCTGCGCCACCGTCGGAAGCGGTGGTGGGTACGTTAATGGCAAAGAAAGATGGAAGCTTGAGGAGTGTGGTGATCAATGTGACGGGTGCAGGCACAAATAATGGGTTCCCATCGTTTCTTCCAAAGGAGGTTGAGAAAATTAAGGACCCATATGCCAGAAAGTTGGCTCAGAGGATGGAGAGGCTCCCTGTGTCGATTGGGTCGTCGGAAAGTTATATCATGAGTAGTTGTGTAAGGCCTCCAAAACAAAGTGAGATCAATCCGGTGGTTCTCCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCGCGTACCCCCTGCTTGAAGAGGCCGGATTGGAGGCTTGGGCTGTTGATGTTCTTGGGTGGGGCTTCTCTGATTTAGAAAGGTGTCCACCATGCAGCGCGGCATCCAAGCGGCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGACCGATGGTATTAGTTGGACCAAGCCTCGGTGGTTCTGTTGCAATTGACTTTGCATACCACTATCCAGTAGCTGTTGAAAAGCTGGTTTTAATCAATGCAAGCGTCTACGCAGAAGGCACCGGAGACATGGCAAAGTTACCTAAAGCTGTGGCCTACGCTGGGGTTTCTTTATTGAAGAGCACCCCTCTACGCTTCTACGCAAATATGCTGGCCTTCAACGGCATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGACGCTTACACTGTCTGCTACCTTGGTGGAAAGATGCAATGGTCAGTTTTATGACTAGCGGGGGCTATAATGTCGTTTCCCAAATAAAACAGGTGAAGCAGAAAGTACTAGTGATTTGCAGCGAGCAAGACAATATTATCAGCTACAAACAAATATTGAGGCTGCGTTGTGAGCTTCCGTATGCAATCATGCGGCTAATACCGGATAGCGGTCATCTCCCTCATGTTGATAATCCCGCCTCCGTTGCAAAACTAATCGCAGGGTTTGCTCGGAACGGTCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

8.97

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	2 cut(s)	335, 431
AciI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
AfaI	GTAC	3 cut(s)	52, 338, 849
AfiI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
AgsI	TTSAA	4 cut(s)	350, 560, 658, 700
AhlI	ACTAGT	1 cut(s)	850
AluBI	AGCT	7 cut(s)	78, 554, 565, 629, 716, 885, 916
AluI	AGCT	7 cut(s)	78, 554, 565, 629, 716, 885, 916
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	257, 354, 633, 693
ApeKI	GCWGC	3 cut(s)	426, 861, 904
AspLEI	GCGC	3 cut(s)	28, 335, 431
AspS9I	GGNCC	2 cut(s)	166, 500
AsuHPI	GGTGA	3 cut(s)	103, 440, 847
AvaII	GGWCC	2 cut(s)	166, 500
BanI	GGYRCC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	438, 873, 891
BccI	CCATC	4 cut(s)	65, 139, 190, 481
BceAI	ACGGC	1 cut(s)	718
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	600
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	2 cut(s)	798, 851
BisI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
BlsI	GCNGC	7 cut(s)	9, 428, 433, 444, 863, 906, 936
BmcAI	AGTACT	1 cut(s)	849
Bme18I	GGWCC	2 cut(s)	166, 500
BmgT120I	GGNCC	2 cut(s)	166, 500
BmiI	GGNNCC	4 cut(s)	128, 168, 206, 601
BmsI	GCATC	3 cut(s)	443, 454, 766
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
BpuEI	CTTGAG	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	508, 764
BsaWI	WCCGGW	3 cut(s)	283, 602, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	298, 786
BseDI	CCNNGG	2 cut(s)	508, 764
BseGI	GGATG	2 cut(s)	201, 434
BseLI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
BseMI	GCAATG	2 cut(s)	298, 786
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	2 cut(s)	97, 284
BseXI	GCAGC	3 cut(s)	438, 873, 891
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	2 cut(s)	335, 431
Bsh1285I	CGRYCG	1 cut(s)	1021
BshFI	GGCC	4 cut(s)	259, 356, 635, 695
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	665
BsiSI	CCGG	4 cut(s)	284, 357, 603, 944
BslI	CCNNNNNNNGG	4 cut(s)	509, 642, 729, 950
BsmAI	GTCTC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	259, 356, 635, 695
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	93, 276
BspACI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
BspANI	GGCC	4 cut(s)	259, 356, 635, 695
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	335, 431
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	128, 168, 206, 601
BspQI	GCTCTTC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	298, 786
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	508, 764
BssMI	GATC	2 cut(s)	93, 276
BssT1I	CCWWGG	1 cut(s)	764
Bst4CI	ACNGT	4 cut(s)	33, 311, 755, 1019
Bst6I	CTCTTC	2 cut(s)	345, 653
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	4 cut(s)	112, 583, 693, 866
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	201, 434
BstFNI	CGCG	2 cut(s)	335, 431
BstHHI	GCGC	3 cut(s)	28, 335, 431
BstKTI	GATC	2 cut(s)	96, 279
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	93, 276
BstMCI	CGRYCG	1 cut(s)	1021
BstMWI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
BstPAI	GACNNNNGTC	1 cut(s)	737
BstUI	CGCG	2 cut(s)	335, 431
BstV1I	GCAGC	3 cut(s)	438, 873, 891
BstV2I	GAAGAC	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	259, 356, 635, 695
BtsCI	GGATG	2 cut(s)	201, 434
BtsIMutI	CAGTG	1 cut(s)	751
Cac8I	GCNNGC	4 cut(s)	112, 583, 693, 866
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	3 cut(s)	28, 335, 431
Cfr13I	GGNCC	2 cut(s)	166, 500
CseI	GACGC	2 cut(s)	574, 753
Csp6I	GTAC	3 cut(s)	51, 337, 848
CviAII	CATG	5 cut(s)	241, 423, 610, 931, 965
CviQI	GTAC	3 cut(s)	51, 337, 848
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	95, 278
DpnII	GATC	2 cut(s)	93, 276
Eam1104I	CTCTTC	2 cut(s)	345, 653
EarI	CTCTTC	2 cut(s)	345, 653
Eco130I	CCWWGG	1 cut(s)	764
Eco147I	AGGCCT	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	166, 500
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	5 cut(s)	244, 426, 613, 934, 968
FatI	CATG	5 cut(s)	240, 422, 609, 930, 964
FauI	CCCGC	2 cut(s)	794, 985
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
FokI	GGATG	2 cut(s)	208, 421
Fsp4HI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
FspBI	CTAG	2 cut(s)	798, 851
GlaI	GCGC	3 cut(s)	27, 334, 430
GluI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	259, 356, 635, 695
HapII	CCGG	4 cut(s)	284, 357, 603, 944
HgaI	GACGC	2 cut(s)	574, 753
HhaI	GCGC	3 cut(s)	28, 335, 431
Hin1II	CATG	5 cut(s)	244, 426, 613, 934, 968
Hin6I	GCGC	3 cut(s)	26, 333, 429
HinP1I	GCGC	3 cut(s)	26, 333, 429
HindIII	AAGCTT	1 cut(s)	76
HpaII	CCGG	4 cut(s)	284, 357, 603, 944
HphI	GGTGA	3 cut(s)	103, 440, 847
Hpy166II	GTNNAC	2 cut(s)	419, 589
Hpy188I	TCNGA	7 cut(s)	37, 192, 229, 403, 479, 743, 1014
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	419, 589
Hpy99I	CGWCG	2 cut(s)	37, 229
HpyAV	CCTTC	2 cut(s)	590, 706
HpyCH4III	ACNGT	4 cut(s)	33, 311, 755, 1019
HpyCH4IV	ACGT	2 cut(s)	14, 53
HpyCH4V	TGCA	9 cut(s)	110, 426, 524, 536, 581, 779, 861, 926, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	14, 53
Hsp92II	CATG	5 cut(s)	244, 426, 613, 934, 968
HspAI	GCGC	3 cut(s)	26, 333, 429
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 276
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	3 cut(s)	438, 873, 891
LweI	GCATC	3 cut(s)	443, 454, 766
MaeI	CTAG	2 cut(s)	798, 851
MaeII	ACGT	2 cut(s)	14, 53
MaeIII	GTNAC	2 cut(s)	100, 618
MalI	GATC	2 cut(s)	95, 278
MboI	GATC	2 cut(s)	93, 276
MboII	GAAGA	4 cut(s)	131, 362, 492, 670
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	2 cut(s)	159, 525
MmeI	TCCRAC	4 cut(s)	15, 207, 478, 721
MseI	TTAA	3 cut(s)	56, 162, 572
MspI	CCGG	4 cut(s)	284, 357, 603, 944
MunI	CAATTG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	335, 431
MwoI	GCNNNNNNNGC	3 cut(s)	913, 986, 1007
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	93, 276
NlaIII	CATG	5 cut(s)	244, 426, 613, 934, 968
NlaIV	GGNNCC	4 cut(s)	128, 168, 206, 601
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 1018
PkrI	GCNGC	7 cut(s)	9, 428, 433, 444, 863, 906, 936
PpuMI	RGGWCCY	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	4 cut(s)	128, 168, 206, 601
PspPI	GGNCC	2 cut(s)	166, 500
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	52, 338, 849
RsaNI	GTAC	3 cut(s)	51, 337, 848
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	56, 162, 572
SatI	GCNGC	7 cut(s)	8, 427, 432, 443, 862, 905, 935
Sau3AI	GATC	2 cut(s)	93, 276
Sau96I	GGNCC	2 cut(s)	166, 500
ScaI	AGTACT	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	3 cut(s)	443, 454, 766
SinI	GGWCC	2 cut(s)	166, 500
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	2 cut(s)	159, 525
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	8 cut(s)	8, 41, 431, 442, 801, 934, 951, 978
SspI	AATATT	2 cut(s)	877, 897
SspMI	CTAG	2 cut(s)	798, 851
StuI	AGGCCT	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	4 cut(s)	33, 311, 755, 1019
TaiI	ACGT	2 cut(s)	17, 56
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	159, 525
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	4 cut(s)	10, 434, 445, 937
Tru1I	TTAA	3 cut(s)	56, 162, 572
Tru9I	TTAA	3 cut(s)	56, 162, 572
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	426, 861, 904
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	699
TspGWI	ACGGA	2 cut(s)	909, 973
TspRI	CASTG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	166, 500
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	2 cut(s)	798, 851
ZrmI	AGTACT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.