Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

24390410 .. 24395022

Gene Structure 4613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGTCTCTGGTGTGGGGTTCCTCCTCACCGCCCCCACCACCACCAGAAGCAGCAGTGAGCACAATGGCAAAGAAATGTGGAGGCTCAAGGGGTCTTCTGAGCAGCAGCAAGGGTGTGGTGAGTAATTCAAGTGGTGCAGTGGCTTCTTGTACTACTGGGTTTCCCTCATTTCTTCCAAAGGAGGTGGAGAAAATTAAAGACCCTTATGCCAGAACCTTGGCTCAAAGGATGGAGAGGCTCCCTGTACAGATTGGATCCTCTGAAAGTTTTATTATGAGTAGTTGTGTGAAACCTCAAAAACAAAGTGAGATCAATCCAGTGGTTCTCCTTCATTGCTTTGACAGTTCTTGTTTAGAGTGGAGGTGCGCATACCCCCTGCTTGAAGAAGCTGGGTTGGAGGCTTGGGCTGTTGATGTTCTCGGGTGGGGATTCTCTGATTTAGAAAGGCGCCCACCGTGCAGTGCAGCATCCAAGCGTCATCATCTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCAATGATATTAGTTGGACCAAGCCTTGGTGCTTCGGTTGCAATTGACTTTGCAGTCCACCATCCAGTAGCTGTTGAAAAGCTGGTTTTAATCAATGCAAGTGTGTATGCAGAAGGCACTGGAGACCTGGCAAAGTTACCTAAATTCTTAGCCTACGCTGGGGTTTCTTTATTGAAGAGCATACCTCTACGCCTTTATGCAAATTTGTTGGCCTTCAATGGCATTTCATTATCTACAACCTTTGATTGGACGAATGTTGGCCGTTTACACTGTTTGCTGCCTTGGTGGAAAGATGCAACAGTCAGTTTTATGAGTAGTGGAGGCTACAATGTTATTTCCCAAATAAAACAGGTGAAGCAAAAAGTACTTGTGATTTGCAGCGAGCAAGATCATATTATCAGCTACAAACAAATATTGAGGCTACGCTGTGAGCTTCCGTGCGCAATCATGCGGCTAATACCAGATAGTGGTCACCTCCCTCATGTTGAAAACCCCACCTCTGTTGCGAAACTAATTGCAGGGTTTGCTCGGAACGATCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

355

Amino Acids

38.79

Weight (kDa)

9.03

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc16I	TGCGCA	2 cut(s)	370, 961
AccB1I	GGYRCC	1 cut(s)	450
AccB7I	CCANNNNNTGG	2 cut(s)	545, 986
AciI	CCGC	2 cut(s)	32, 970
AclWI	GGATC	2 cut(s)	252, 265
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	2 cut(s)	662, 721
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	3 cut(s)	154, 249, 885
AfiI	CCNNNNNNNGG	4 cut(s)	545, 678, 765, 986
AgsI	TTSAA	6 cut(s)	132, 386, 596, 694, 736, 1007
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	5 cut(s)	392, 590, 601, 921, 952
AluI	AGCT	5 cut(s)	392, 590, 601, 921, 952
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	12, 636
AlwI	GGATC	2 cut(s)	252, 265
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	3 cut(s)	518, 729, 778
ApeKI	GCWGC	6 cut(s)	53, 105, 108, 467, 796, 897
ApoI	RAATTY	2 cut(s)	662, 721
AspLEI	GCGC	3 cut(s)	371, 453, 962
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	4 cut(s)	21, 133, 883, 983
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	6 cut(s)	65, 117, 120, 479, 783, 909
BccI	CCATC	2 cut(s)	226, 588
BceAI	ACGGC	1 cut(s)	765
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	2 cut(s)	12, 636
BfoI	RGCGCY	1 cut(s)	454
BisI	GCNGC	7 cut(s)	54, 106, 109, 468, 797, 898, 971
BlsI	GCNGC	7 cut(s)	55, 107, 110, 469, 798, 899, 972
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	4 cut(s)	22, 242, 259, 452
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	479, 802
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	219, 544, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 678, 765, 986
Bse1I	ACTGG	4 cut(s)	163, 320, 584, 643
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	3 cut(s)	219, 544, 800
BseGI	GGATG	3 cut(s)	237, 470, 580
BseLI	CCNNNNNNNGG	4 cut(s)	545, 678, 765, 986
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	4 cut(s)	163, 320, 584, 643
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	6 cut(s)	65, 117, 120, 479, 783, 909
BseYI	CCCAGC	2 cut(s)	392, 677
BsgI	GTGCAG	3 cut(s)	159, 481, 486
Bsh1285I	CGRYCG	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	520, 731, 780
BshNI	GGYRCC	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	545, 678, 765, 986
BsmAI	GTCTC	2 cut(s)	12, 636
BsnI	GGCC	3 cut(s)	520, 731, 780
Bso31I	GGTCTC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	257, 312, 907, 1054
BspACI	CCGC	2 cut(s)	32, 970
BspANI	GGCC	3 cut(s)	520, 731, 780
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	22, 242, 259, 452
BspPI	GGATC	2 cut(s)	252, 265
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	4 cut(s)	163, 320, 584, 643
BssECI	CCNNGG	3 cut(s)	219, 544, 800
BssMI	GATC	4 cut(s)	257, 312, 907, 1054
BssNI	GRCGYC	1 cut(s)	451
BssT1I	CCWWGG	3 cut(s)	219, 544, 800
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	347, 459, 791, 820
Bst6I	CTCTTC	1 cut(s)	689
BstACI	GRCGYC	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	1043
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	902
BstDEI	CTNAG	2 cut(s)	101, 667
BstEII	GGTNACC	1 cut(s)	989
BstF5I	GGATG	3 cut(s)	237, 470, 580
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	3 cut(s)	371, 453, 962
BstKTI	GATC	4 cut(s)	260, 315, 910, 1057
BstMAI	GTCTC	2 cut(s)	12, 636
BstMBI	GATC	4 cut(s)	257, 312, 907, 1054
BstMCI	CGRYCG	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	3 cut(s)	459, 557, 1043
BstNI	CCWGG	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	1 cut(s)	645
BstV1I	GCAGC	6 cut(s)	65, 117, 120, 479, 783, 909
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	520, 731, 780
BtsCI	GGATG	3 cut(s)	237, 470, 580
BtsI	GCAGTG	3 cut(s)	63, 147, 469
BtsIMutI	CAGTG	6 cut(s)	63, 147, 327, 469, 636, 787
Cac8I	GCNNGC	1 cut(s)	902
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	3 cut(s)	371, 453, 962
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	153, 248, 884
CspCI	CAANNNNNGTGG	4 cut(s)	168, 203, 1003, 1038
CviAII	CATG	2 cut(s)	967, 1001
CviQI	GTAC	3 cut(s)	153, 248, 884
DdeI	CTNAG	2 cut(s)	101, 667
DinI	GGCGCC	1 cut(s)	452
DpnI	GATC	4 cut(s)	259, 314, 909, 1056
DpnII	GATC	4 cut(s)	257, 312, 907, 1054
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	3 cut(s)	219, 544, 800
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	989
EcoO65I	GGTNACC	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	3 cut(s)	219, 544, 800
EgeI	GGCGCC	1 cut(s)	452
EheI	GGCGCC	1 cut(s)	452
ErhI	CCWWGG	3 cut(s)	219, 544, 800
FaeI	CATG	2 cut(s)	970, 1004
FatI	CATG	2 cut(s)	966, 1000
Fnu4HI	GCNGC	7 cut(s)	54, 106, 109, 468, 797, 898, 971
FokI	GGATG	3 cut(s)	244, 457, 567
Fsp4HI	GCNGC	7 cut(s)	54, 106, 109, 468, 797, 898, 971
FspAI	RTGCGCAY	1 cut(s)	370
FspI	TGCGCA	2 cut(s)	370, 961
GlaI	GCGC	3 cut(s)	370, 452, 961
GluI	GCNGC	7 cut(s)	54, 106, 109, 468, 797, 898, 971
GsaI	CCCAGC	2 cut(s)	396, 681
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	3 cut(s)	520, 731, 780
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	3 cut(s)	371, 453, 962
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	970, 1004
Hin6I	GCGC	3 cut(s)	369, 451, 960
HinP1I	GCGC	3 cut(s)	369, 451, 960
HinfI	GANTC	1 cut(s)	432
HphI	GGTGA	4 cut(s)	21, 133, 883, 983
Hpy166II	GTNNAC	2 cut(s)	577, 785
Hpy188I	TCNGA	5 cut(s)	102, 265, 439, 515, 1050
Hpy8I	GTNNAC	2 cut(s)	577, 785
HpyAV	CCTTC	4 cut(s)	341, 510, 626, 742
HpyCH4III	ACNGT	4 cut(s)	347, 459, 791, 820
HpyF10VI	GCNNNNNNNGC	3 cut(s)	459, 557, 1043
HpyF3I	CTNAG	2 cut(s)	101, 667
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	2 cut(s)	970, 1004
HspAI	GCGC	3 cut(s)	369, 451, 960
KasI	GGCGCC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	257, 312, 907, 1054
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	6 cut(s)	65, 117, 120, 479, 783, 909
LweI	GCATC	2 cut(s)	479, 802
MaeIII	GTNAC	2 cut(s)	654, 989
MalI	GATC	4 cut(s)	259, 314, 909, 1056
MboI	GATC	4 cut(s)	257, 312, 907, 1054
MboII	GAAGA	4 cut(s)	89, 167, 398, 706
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	6 cut(s)	127, 195, 561, 662, 721, 1032
Mly113I	GGCGCC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	378, 514
MseI	TTAA	2 cut(s)	198, 608
MspR9I	CCNGG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	459, 557, 1043
NarI	GGCGCC	1 cut(s)	451
NdeII	GATC	4 cut(s)	257, 312, 907, 1054
NlaIII	CATG	2 cut(s)	970, 1004
NlaIV	GGNNCC	4 cut(s)	22, 242, 259, 452
NmuCI	GTSAC	1 cut(s)	989
NsbI	TGCGCA	2 cut(s)	370, 961
PciSI	GCTCTTC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	1054
PfeI	GAWTC	1 cut(s)	432
PflMI	CCANNNNNTGG	2 cut(s)	545, 986
PkrI	GCNGC	7 cut(s)	55, 107, 110, 469, 798, 899, 972
Ple19I	CGATCG	1 cut(s)	1057
PluTI	GGCGCC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	645
PspEI	GGTNACC	1 cut(s)	989
PspFI	CCCAGC	2 cut(s)	392, 677
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	4 cut(s)	22, 242, 259, 452
PspPI	GGNCC	1 cut(s)	536
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	1057
RsaI	GTAC	3 cut(s)	154, 249, 885
RsaNI	GTAC	3 cut(s)	153, 248, 884
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	198, 608
SatI	GCNGC	7 cut(s)	54, 106, 109, 468, 797, 898, 971
Sau3AI	GATC	4 cut(s)	257, 312, 907, 1054
Sau96I	GGNCC	1 cut(s)	536
ScaI	AGTACT	1 cut(s)	885
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	479, 802
SfoI	GGCGCC	1 cut(s)	452
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	6 cut(s)	127, 195, 561, 662, 721, 1032
SsiI	CCGC	2 cut(s)	32, 970
SspDI	GGCGCC	1 cut(s)	450
SspI	AATATT	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	3 cut(s)	219, 544, 800
TaaI	ACNGT	4 cut(s)	347, 459, 791, 820
TasI	AATT	6 cut(s)	127, 195, 561, 662, 721, 1032
TatI	WGTACW	3 cut(s)	152, 247, 883
TauI	GCSGC	1 cut(s)	973
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	198, 608
Tru9I	TTAA	2 cut(s)	198, 608
TscAI	CASTG	6 cut(s)	63, 147, 327, 469, 643, 794
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	6 cut(s)	53, 105, 108, 467, 796, 897
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	2 cut(s)	323, 735
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	6 cut(s)	63, 147, 327, 469, 643, 794
Van91I	CCANNNNNTGG	2 cut(s)	545, 986
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	662, 721
ZrmI	AGTACT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.