Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

81862605 .. 81866552

Gene Structure 3948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG596400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATACCTCTGGTGTTTGGTTCTTCACTGCCCTCACCGACACCGCCAGAGGCAGTAGAGACGCCGGCTACAAAGAAATGTGGGAGCTTAGCGGGTCCCCGGATCTTCCCAAATGGAAGCCGTTCGGGTTCCGGTAACGGGTTCCCGCCGTTTCTTCCCAAAGAGGTTGAGAAGATCCGAGACCCTTATGCCAGAAACTTGGCTCAAAGAATGGAGAGGCTCCCTGTGCAGATGGGGTTATATGAAAGTTGTATAATGAGTAGTTGTGTGAAACCTCTAGTACAAACCAAGAACAATCCAGTGGTTCTTCTCCATTGCTTTGACAGTTCTTGTTTAGAATGGAGGTGCACATATCCCCTGCTTGAAGAGGCCGGGTTGGAGGCTTGGGCGATTGATGTGCTCGGGTGGGGCTTCTCCGATTTAGAAAGGCTTCCACCATGCAATCAGGAATCAAAGCGTCATCACCTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCGATGATATTAGTTGGACCAAGCCTCGGTGCTTCTGTTGCAATTGACTTTGCAGTTAGTTATCCGTTTGCTGTTGAAAAGCTGGTTTTGATTAATGCAAGTGTGTACGCAGAAGGCACCAAAGGCCTTGCAGAATTTCCTAGAGTATTAGCCTATGCTGGGGTTTCCTTGTTGAGCAGCATGCCTCTACGGCTTTACGCCAATACGCTGGCCTTCAATGACATTTCATTAGCTACAACCTTTGATTGGACTAATGTCGGCCGCTTACACTGTTTGCTGCCTTGGTGGAAAGATGCAACAGTAAGTTTCATGAGTAGTGGGGGCTACAATGTTATTGCGCAAATAAAACAGGTATATTACTATTTCTACCTGTATGAATTTAGTATATATGTGGTACTGTTTCAAATGTTGGAGAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

306

Amino Acids

34.34

Weight (kDa)

7.53

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	99 - 199	1.4e-06	alpha/beta hydrolase fold
Hydrolase_4	PF12146	101 - 210	8.9e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	101 - 224	2e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	4 cut(s)	44, 92, 146, 760
AclWI	GGATC	2 cut(s)	110, 169
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	2 cut(s)	632, 875
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	3 cut(s)	282, 605, 894
AfiI	CCNNNNNNNGG	4 cut(s)	138, 524, 657, 744
AgsI	TTSAA	4 cut(s)	365, 575, 715, 902
AluBI	AGCT	3 cut(s)	87, 580, 731
AluI	AGCT	3 cut(s)	87, 580, 731
Alw21I	GWGCWC	2 cut(s)	350, 402
Alw26I	GTCTC	2 cut(s)	53, 174
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	2 cut(s)	110, 169
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	369, 497, 622, 708, 757
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	675, 775
ApoI	RAATTY	2 cut(s)	632, 875
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	121, 429
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	2 cut(s)	95, 515
AsuC2I	CCSGG	2 cut(s)	100, 373
AsuHPI	GGTGA	2 cut(s)	27, 455
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	95, 515
BaeGI	GKGCMC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	614
Bbv12I	GWGCWC	2 cut(s)	350, 402
BbvI	GCAGC	2 cut(s)	687, 762
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	3 cut(s)	105, 133, 704
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	2 cut(s)	100, 373
BcoDI	GTCTC	2 cut(s)	53, 174
BfaI	CTAG	2 cut(s)	278, 639
BglI	GCCNNNNNGGC	1 cut(s)	688
BisI	GCNGC	3 cut(s)	676, 760, 776
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	3 cut(s)	677, 761, 777
Bme1390I	CCNGG	2 cut(s)	100, 373
Bme18I	GGWCC	2 cut(s)	95, 515
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	95, 515
BmiI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BmrFI	CCNGG	2 cut(s)	100, 373
BmsI	GCATC	1 cut(s)	781
BoxI	GACNNNNGTC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	100, 373
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	98, 523, 779
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 524, 657, 744
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	98, 523, 779
BseLI	CCNNNNNNNGG	4 cut(s)	138, 524, 657, 744
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	687, 762
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	2 cut(s)	350, 402
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	65, 100, 132, 372
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	4 cut(s)	138, 524, 657, 744
BsmAI	GTCTC	2 cut(s)	53, 174
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	371, 499, 624, 710, 759
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	350, 402
Bsp143I	GATC	2 cut(s)	102, 174
Bsp1720I	GCTNAGC	1 cut(s)	88
BspACI	CCGC	4 cut(s)	44, 92, 146, 760
BspANI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
BspPI	GGATC	2 cut(s)	110, 169
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	98, 523, 779
BssMI	GATC	2 cut(s)	102, 174
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	779
Bst4CI	ACNGT	4 cut(s)	326, 770, 799, 897
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	66, 680, 708
BstDEI	CTNAG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	2 cut(s)	105, 177
BstMAI	GTCTC	2 cut(s)	53, 174
BstMBI	GATC	2 cut(s)	102, 174
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 688
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	98, 371
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	687, 762
BstX2I	RGATCY	2 cut(s)	102, 174
BstXI	CCANNNNNNTGG	2 cut(s)	199, 706
BstYI	RGATCY	2 cut(s)	102, 174
BstZI	CGGCCG	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	371, 499, 624, 710, 759
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	26, 306, 766
Cac8I	GCNNGC	3 cut(s)	66, 680, 708
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	95, 515
CseI	GACGC	2 cut(s)	70, 446
Csp6I	GTAC	3 cut(s)	281, 604, 893
CviAII	CATG	3 cut(s)	438, 679, 808
CviQI	GTAC	3 cut(s)	281, 604, 893
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	104, 176
DpnII	GATC	2 cut(s)	102, 174
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	95, 515
Eco52I	CGGCCG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	3 cut(s)	441, 682, 811
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	437, 678, 807
FauI	CCCGC	2 cut(s)	85, 153
Fnu4HI	GCNGC	3 cut(s)	676, 760, 776
Fsp4HI	GCNGC	3 cut(s)	676, 760, 776
FspBI	CTAG	2 cut(s)	278, 639
FspI	TGCGCA	1 cut(s)	837
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	3 cut(s)	676, 760, 776
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	371, 499, 624, 710, 759
HapII	CCGG	4 cut(s)	65, 100, 132, 372
HgaI	GACGC	2 cut(s)	70, 446
HhaI	GCGC	1 cut(s)	838
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	441, 682, 811
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	4 cut(s)	65, 100, 132, 372
HphI	GGTGA	2 cut(s)	27, 455
Hpy166II	GTNNAC	2 cut(s)	348, 604
Hpy188I	TCNGA	3 cut(s)	179, 418, 494
Hpy188III	TCNNGA	2 cut(s)	446, 808
Hpy8I	GTNNAC	2 cut(s)	348, 604
HpyAV	CCTTC	3 cut(s)	489, 605, 721
HpyCH4III	ACNGT	4 cut(s)	326, 770, 799, 897
HpyCH4V	TGCA	8 cut(s)	229, 348, 441, 539, 551, 596, 629, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 688
HpyF3I	CTNAG	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	441, 682, 811
HspAI	GCGC	1 cut(s)	836
KflI	GGGWCCC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	102, 174
LmnI	GCTCC	2 cut(s)	84, 225
Lsp1109I	GCAGC	2 cut(s)	687, 762
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	278, 639
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	104, 176
MboI	GATC	2 cut(s)	102, 174
MboII	GAAGA	6 cut(s)	15, 97, 146, 184, 299, 377
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	102, 174
MhlI	GDGCHC	2 cut(s)	350, 402
MluCI	AATT	3 cut(s)	540, 632, 875
MmeI	TCCRAC	3 cut(s)	357, 493, 888
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	121, 429
MseI	TTAA	1 cut(s)	591
MspI	CCGG	4 cut(s)	65, 100, 132, 372
MspR9I	CCNGG	2 cut(s)	100, 373
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	226, 536, 621, 688
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	100, 373
NdeII	GATC	2 cut(s)	102, 174
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	441, 682, 811
NlaIV	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
NsbI	TGCGCA	1 cut(s)	837
NspI	RCATGY	1 cut(s)	682
PaeI	GCATGC	1 cut(s)	682
PagI	TCATGA	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	121, 429
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	677, 761, 777
PpuMI	RGGWCCY	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	752
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	656
PspN4I	GGNNCC	6 cut(s)	96, 97, 130, 143, 221, 616
PspPI	GGNCC	2 cut(s)	95, 515
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	102, 174
RsaI	GTAC	3 cut(s)	282, 605, 894
RsaNI	GTAC	3 cut(s)	281, 604, 893
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	3 cut(s)	676, 760, 776
Sau3AI	GATC	2 cut(s)	102, 174
Sau96I	GGNCC	2 cut(s)	95, 515
ScrFI	CCNGG	2 cut(s)	100, 373
SduI	GDGCHC	2 cut(s)	350, 402
SfaNI	GCATC	1 cut(s)	781
SinI	GGWCC	2 cut(s)	95, 515
SphI	GCATGC	1 cut(s)	682
Sse9I	AATT	3 cut(s)	540, 632, 875
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	4 cut(s)	44, 92, 146, 760
SspMI	CTAG	2 cut(s)	278, 639
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	98, 371
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	4 cut(s)	326, 770, 799, 897
TasI	AATT	3 cut(s)	540, 632, 875
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	33, 306, 773
TseI	GCWGC	2 cut(s)	675, 775
TspDTI	ATGAA	4 cut(s)	258, 714, 796, 888
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	3 cut(s)	33, 306, 773
VneI	GTGCAC	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	95, 515
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	2 cut(s)	632, 875
XceI	RCATGY	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	121, 429
XspI	CTAG	2 cut(s)	278, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.