Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

16283146 .. 16285344

Gene Structure 2199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGCGATGTTAATCGGAAGAGCTTTTAAGTCAGCGAGAAACTCTAATCTTGCTATTCGTGCTAGATCCTTATGTACGACATCTGCCGCTCGTCAACCCGATTCCGATACTCAGCCATCGGAATCTTCGTCGTCGTTCACATTCGAGAAGGAAAATGAGAAACCCATCTTAGTGAAAGCTCCGAACTCTCGCCGGAAAAACGAATCGGATTCAGTGACGATGCCGACGTCTTTCATGACTGGTTCGATCGTAGGGAAGAGGTTTTACAAGAAAGTGACGACTAGAGAAGCTGATGATGGAAATGGATGGACTGTGATGCTTGATTATAGAACCCTTAAAACCCCTTCGAAAAGACCTCTCAAGCTTCGTTCTTTGGCACTTGCTAAGGCCATTGCTGCTGAGTGGGAGTATCAGCTAACAGAAGGGATCAGACCATTCACAATGCCGCTTATGAGACTAGCATGTACTGCACTTGAAAGAGTTCCTCTTACGCGTTCAAAGATCATAGAACATTTATCGAGAAAGATACATCAAGATCTCGTCTTTTTCCGAGCACCTGAAGATAATGATCTAACTAGTGACGTCCATGATATTCAGGTAGAGAGTATTGATCCTCTACTTGAGTGGATAGAGTCAGAGTTTCGGGTCAAACCGAAAGTGTATTCTAGCATCTTCGGGGGTAAACAAGACGACAAGCTAGTGAAAGCAGTAGAAGAACTGCTCAAGAAAACGAATGATGGTGAACTCGCAAGCATTGATGCACTCCAAGCATCAGCTCACTCTATAGTAATCGCCCTCGGTATCTTCTGTGGGAAACTCCAGATCGATGATGCAATCAAATTGATTAGACTTGAAGAAGATTTACAGGTGGACAAATGGGGACTAGTCGAAGGCGGGCATGACATTGATGTTGCTGATCTCAAAGTTCAGATCTCATCAGCTACAGTGTTTCTTGCTCTATCCCGTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

325

Amino Acids

36.31

Weight (kDa)

6.98

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	87 - 212	5.7e-30	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	233, 588
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	496
AciI	CCGC	4 cut(s)	5, 90, 449, 897
AclWI	GGATC	3 cut(s)	63, 437, 608
AcuI	CTGAAG	1 cut(s)	582
AcyI	GRCGYC	2 cut(s)	230, 585
AfaI	GTAC	2 cut(s)	79, 469
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	479, 501, 857
AhlI	ACTAGT	2 cut(s)	578, 886
AluBI	AGCT	8 cut(s)	26, 182, 293, 367, 418, 700, 779, 944
AluI	AGCT	8 cut(s)	26, 182, 293, 367, 418, 700, 779, 944
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	3 cut(s)	63, 437, 608
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	755
AsuII	TTCGAA	1 cut(s)	350
BarI	GAAGNNNNNNTAC	4 cut(s)	251, 283, 849, 881
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	5 cut(s)	127, 176, 293, 303, 734
BcoDI	GTCTC	1 cut(s)	451
BcuI	ACTAGT	2 cut(s)	578, 886
BfaI	CTAG	7 cut(s)	66, 285, 461, 579, 669, 701, 887
BfmI	CTRYAG	2 cut(s)	786, 945
BglII	AGATCT	2 cut(s)	538, 933
BisI	GCNGC	4 cut(s)	6, 90, 399, 449
BlsI	GCNGC	4 cut(s)	7, 91, 400, 450
BmsI	GCATC	6 cut(s)	213, 309, 681, 751, 782, 823
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	3 cut(s)	347, 644, 710
Bsa29I	ATCGAT	1 cut(s)	828
BsaBI	GATNNNNATC	2 cut(s)	14, 570
BsaHI	GRCGYC	2 cut(s)	230, 585
BsaJI	CCNNGG	1 cut(s)	799
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	2 cut(s)	14, 570
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	799
BseGI	GGATG	1 cut(s)	314
BseJI	GATNNNNATC	2 cut(s)	14, 570
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	128, 393
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	496
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	897
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	897
BsnI	GGCC	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	559
BspACI	CCGC	4 cut(s)	5, 90, 449, 897
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	127, 394
BspDI	ATCGAT	1 cut(s)	828
BspFNI	CGCG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	3 cut(s)	63, 437, 608
BspQI	GCTCTTC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	799
BssNI	GRCGYC	2 cut(s)	230, 585
Bst4CI	ACNGT	2 cut(s)	316, 949
Bst6I	CTCTTC	2 cut(s)	16, 254
BstACI	GRCGYC	2 cut(s)	230, 585
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	754, 899
BstDEI	CTNAG	4 cut(s)	114, 172, 387, 402
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	451
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 398, 470, 770
BstNSI	RCATGY	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	786, 945
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	3 cut(s)	68, 538, 933
BstYI	RGATCY	3 cut(s)	68, 538, 933
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	222, 954
Cac8I	GCNNGC	2 cut(s)	754, 899
CciI	TCATGA	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	78, 468
CviAII	CATG	4 cut(s)	238, 465, 590, 902
CviQI	GTAC	2 cut(s)	78, 468
DdeI	CTNAG	4 cut(s)	114, 172, 387, 402
Eam1104I	CTCTTC	2 cut(s)	16, 254
EarI	CTCTTC	2 cut(s)	16, 254
Eco57I	CTGAAG	1 cut(s)	582
FaeI	CATG	4 cut(s)	241, 468, 593, 905
FaiI	YATR	9 cut(s)	76, 239, 330, 455, 466, 509, 591, 788, 903
FaqI	GGGAC	1 cut(s)	897
FatI	CATG	4 cut(s)	237, 464, 589, 901
FauI	CCCGC	1 cut(s)	890
Fnu4HI	GCNGC	4 cut(s)	6, 90, 399, 449
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	6, 90, 399, 449
FspBI	CTAG	7 cut(s)	66, 285, 461, 579, 669, 701, 887
GluI	GCNGC	4 cut(s)	6, 90, 399, 449
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	196
Hin1I	GRCGYC	2 cut(s)	230, 585
Hin1II	CATG	4 cut(s)	241, 468, 593, 905
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	5 cut(s)	104, 125, 206, 212, 635
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	5 cut(s)	98, 141, 686, 746, 874
Hpy188I	TCNGA	9 cut(s)	20, 109, 124, 186, 211, 434, 554, 640, 933
Hpy188III	TCNNGA	6 cut(s)	148, 238, 522, 536, 727, 823
Hpy8I	GTNNAC	5 cut(s)	98, 141, 686, 746, 874
Hpy99I	CGWCG	3 cut(s)	136, 139, 232
HpyAV	CCTTC	4 cut(s)	145, 357, 419, 887
HpyCH4III	ACNGT	2 cut(s)	316, 949
HpyCH4IV	ACGT	2 cut(s)	230, 585
HpyCH4V	TGCA	3 cut(s)	473, 764, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 398, 470, 770
HpyF3I	CTNAG	4 cut(s)	114, 172, 387, 402
HpySE526I	ACGT	2 cut(s)	230, 585
Hsp92I	GRCGYC	2 cut(s)	230, 585
Hsp92II	CATG	4 cut(s)	241, 468, 593, 905
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	209, 228, 573, 584, 836, 854
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	6 cut(s)	213, 309, 681, 751, 782, 823
MaeI	CTAG	7 cut(s)	66, 285, 461, 579, 669, 701, 887
MaeII	ACGT	2 cut(s)	230, 585
MaeIII	GTNAC	3 cut(s)	217, 277, 581
MbiI	CCGCTC	1 cut(s)	92
MboII	GAAGA	9 cut(s)	33, 120, 271, 575, 667, 728, 799, 869, 872
MflI	RGATCY	3 cut(s)	68, 538, 933
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	1 cut(s)	842
MluI	ACGCGT	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	255, 369, 498, 627, 809
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	14, 30, 339
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	4 cut(s)	62, 398, 470, 770
NlaIII	CATG	4 cut(s)	241, 468, 593, 905
NmuCI	GTSAC	3 cut(s)	217, 277, 581
NspI	RCATGY	1 cut(s)	468
NspV	TTCGAA	1 cut(s)	350
PagI	TCATGA	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 227
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	4 cut(s)	104, 125, 206, 212
PkrI	GCNGC	4 cut(s)	7, 91, 400, 450
Ple19I	CGATCG	1 cut(s)	252
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PsuI	RGATCY	3 cut(s)	68, 538, 933
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	2 cut(s)	79, 469
RsaNI	GTAC	2 cut(s)	78, 468
RseI	CAYNNNNRTG	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	14, 30, 339
SatI	GCNGC	4 cut(s)	6, 90, 399, 449
SchI	GAGTC	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	6 cut(s)	213, 309, 681, 751, 782, 823
SfcI	CTRYAG	2 cut(s)	786, 945
SfuI	TTCGAA	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	3 cut(s)	362, 623, 725
SmoI	CTYRAG	3 cut(s)	362, 623, 725
SpeI	ACTAGT	2 cut(s)	578, 886
Sse9I	AATT	1 cut(s)	842
SsiI	CCGC	4 cut(s)	5, 90, 449, 897
SspMI	CTAG	7 cut(s)	66, 285, 461, 579, 669, 701, 887
TaaI	ACNGT	2 cut(s)	316, 949
TaiI	ACGT	2 cut(s)	233, 588
TaqI	TCGA	6 cut(s)	147, 248, 350, 521, 828, 891
TasI	AATT	1 cut(s)	842
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	3 cut(s)	8, 92, 451
TfiI	GAWTC	4 cut(s)	104, 125, 206, 212
Tru1I	TTAA	3 cut(s)	14, 30, 339
Tru9I	TTAA	3 cut(s)	14, 30, 339
TscAI	CASTG	2 cut(s)	222, 954
TseFI	GTSAC	3 cut(s)	217, 277, 581
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	3 cut(s)	217, 277, 581
TspDTI	ATGAA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	222, 954
XceI	RCATGY	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	7 cut(s)	66, 285, 461, 579, 669, 701, 887
ZraI	GACGTC	2 cut(s)	231, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.