Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

981590 .. 983045

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCGAATTTGCTGATTAACAGGACCCTAAGATCAGTCGGAAACCTCAAACTGATCGGATCTCTCTCTTCTCGAGCTCGCCACTTCAGCTCCACCGCCACCGCCACCGCCGAGCAGCCCCAATCCGATGCTCCATCTTCGTCATTCACCTTCTCCTCCGAGGGAAAAGAAGACAAGAACAACAGCAGTGCCCACGATGACAGCATATACGTCAAGTCGCCGTCGAGTTCGAGCTCCAAGAGCGAAGCGGCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCCATCGTGGGAAAGAGATTTTACAAACAGGTGACGACGAGGCCGGCCGACGACGGCAATGGCTGGACTGTGATGCTCGATTACCGGACACTCAAAACGCCATCGAAGAGGCCCCTAAAGCTTCCTACTTTAGCTCTGGCGAAGGCCATTGCGGCGGAATGGGAATACCAGGAAACAGATGGGATTAGGCCTTTTACAATGCCTCTCATGAAGCATGCTTGTACTGCACTGGAAAGAGTTCCTCTCACACGGCCAAAGGTTATAGATTATTTGATGAAGAAATTTAATCAAGATTTAGTCTTCTGTCGCGCCCCAGATGACAATGATATCACAAGTGTTGTCCATGACCGACAAGTGGAAAAAATGGATCCTTTGCTTGAGTGGGTGAAGTCAGAATTTGGCTTCAAGCCTGCTGTGTACTCGAGCTTTTTTGGTGGGAAGCAGGAGGATGGCCTCACAAGGGCTATAGAGACCTTACTAAAACAAACAGATGACTGTGAATTGGCAGCAATTGATGCCATCGCATCGTCAGCACACTCTCTAATAATTGCCATCGGAATTTTTCGTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

288

Amino Acids

31.6

Weight (kDa)

8.64

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	597
AciI	CCGC	6 cut(s)	96, 102, 108, 248, 440, 443
AclWI	GGATC	3 cut(s)	67, 650, 663
AcoI	YGGCCR	2 cut(s)	333, 539
AcsI	RAATTY	4 cut(s)	7, 569, 683, 846
AcuI	CTGAAG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	2 cut(s)	511, 707
AfiI	CCNNNNNNNGG	2 cut(s)	643, 748
AgsI	TTSAA	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	6 cut(s)	77, 90, 234, 409, 422, 714
AluI	AGCT	6 cut(s)	77, 90, 234, 409, 422, 714
Alw21I	GWGCWC	2 cut(s)	79, 236
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	3 cut(s)	67, 650, 663
Ama87I	CYCGRG	2 cut(s)	72, 709
AoxI	GGCC	7 cut(s)	329, 333, 398, 432, 476, 539, 739
ApeKI	GCWGC	2 cut(s)	115, 794
ApoI	RAATTY	4 cut(s)	7, 569, 683, 846
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	24, 288, 399
AsuHPI	GGTGA	4 cut(s)	139, 271, 331, 685
AvaI	CYCGRG	2 cut(s)	72, 709
AvaII	GGWCC	2 cut(s)	24, 288
BaeGI	GKGCMC	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	655
BanII	GRGCYC	2 cut(s)	79, 236
BbsI	GAAGAC	2 cut(s)	177, 580
Bbv12I	GWGCWC	2 cut(s)	79, 236
BbvI	GCAGC	2 cut(s)	127, 806
BccI	CCATC	7 cut(s)	142, 299, 397, 461, 731, 815, 848
BceAI	ACGGC	3 cut(s)	205, 358, 554
BciT130I	CCWGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	752
BfmI	CTRYAG	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	116, 249, 441, 795
BlsI	GCNGC	4 cut(s)	117, 250, 442, 796
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	2 cut(s)	24, 288
BmeT110I	CYCGRG	2 cut(s)	72, 709
BmgT120I	GGNCC	3 cut(s)	24, 288, 399
BmiI	GGNNCC	4 cut(s)	26, 289, 401, 657
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	5 cut(s)	118, 255, 351, 793, 821
BpiI	GAAGAC	2 cut(s)	177, 580
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BpuEI	CTTGAG	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 748
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	2 cut(s)	352, 435
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	2 cut(s)	643, 748
BseMI	GCAATG	2 cut(s)	352, 435
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	127, 806
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	7 cut(s)	331, 335, 400, 434, 478, 541, 741
BsiEI	CGRYCG	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	79, 236
BsiHKCI	CYCGRG	2 cut(s)	72, 709
BsiSI	CCGG	2 cut(s)	332, 373
BslI	CCNNNNNNNGG	2 cut(s)	643, 748
BsmAI	GTCTC	1 cut(s)	752
BsnI	GGCC	7 cut(s)	331, 335, 400, 434, 478, 541, 741
Bso31I	GGTCTC	1 cut(s)	752
BsoBI	CYCGRG	2 cut(s)	72, 709
Bsp1286I	GDGCHC	3 cut(s)	79, 193, 236
Bsp143I	GATC	4 cut(s)	32, 54, 59, 655
BspACI	CCGC	6 cut(s)	96, 102, 108, 248, 440, 443
BspANI	GGCC	7 cut(s)	331, 335, 400, 434, 478, 541, 741
BspFNI	CGCG	1 cut(s)	597
BspHI	TCATGA	2 cut(s)	279, 495
BspLI	GGNNCC	4 cut(s)	26, 289, 401, 657
BspPI	GGATC	3 cut(s)	67, 650, 663
BspTNI	GGTCTC	1 cut(s)	752
BsrDI	GCAATG	2 cut(s)	352, 435
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	32, 54, 59, 655
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	358, 785
Bst6I	CTCTTC	2 cut(s)	73, 389
BstACI	GRCGYC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	4 cut(s)	79, 333, 504, 699
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	4 cut(s)	35, 57, 62, 658
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	4 cut(s)	32, 54, 59, 655
BstMCI	CGRYCG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 240, 406, 440, 512, 803, 818
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	127, 806
BstV2I	GAAGAC	2 cut(s)	177, 580
BstX2I	RGATCY	2 cut(s)	59, 655
BstYI	RGATCY	2 cut(s)	59, 655
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	7 cut(s)	331, 335, 400, 434, 478, 541, 741
BtgZI	GCGATG	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	193, 515
Cac8I	GCNNGC	4 cut(s)	79, 333, 504, 699
CciI	TCATGA	2 cut(s)	279, 495
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	24, 288, 399
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	510, 706
CviAII	CATG	4 cut(s)	280, 496, 503, 632
CviQI	GTAC	2 cut(s)	510, 706
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	4 cut(s)	34, 56, 61, 657
DpnII	GATC	4 cut(s)	32, 54, 59, 655
EaeI	YGGCCR	2 cut(s)	333, 539
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	73, 389
EarI	CTCTTC	2 cut(s)	73, 389
EciI	GGCGGA	1 cut(s)	458
Ecl136II	GAGCTC	2 cut(s)	77, 234
EclXI	CGGCCG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	79, 236
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	24, 288
Eco52I	CGGCCG	1 cut(s)	333
Eco53kI	GAGCTC	2 cut(s)	77, 234
Eco57I	CTGAAG	1 cut(s)	70
Eco88I	CYCGRG	2 cut(s)	72, 709
EcoICRI	GAGCTC	2 cut(s)	77, 234
EcoO109I	RGGNCCY	2 cut(s)	24, 399
EcoRII	CCWGG	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	79, 236
FaeI	CATG	4 cut(s)	283, 499, 506, 635
FaiI	YATR	8 cut(s)	206, 208, 281, 497, 504, 551, 633, 755
FatI	CATG	4 cut(s)	279, 495, 502, 631
Fnu4HI	GCNGC	4 cut(s)	116, 249, 441, 795
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	2 cut(s)	79, 236
FseI	GGCCGGCC	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	116, 249, 441, 795
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	116, 249, 441, 795
HaeIII	GGCC	7 cut(s)	331, 335, 400, 434, 478, 541, 741
HapII	CCGG	2 cut(s)	332, 373
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	283, 499, 506, 635
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	407
HpaII	CCGG	2 cut(s)	332, 373
HphI	GGTGA	4 cut(s)	139, 271, 331, 685
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	6 cut(s)	41, 59, 127, 160, 682, 845
Hpy188III	TCNNGA	4 cut(s)	72, 280, 496, 578
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	6 cut(s)	226, 256, 259, 328, 341, 344
HpyAV	CCTTC	2 cut(s)	160, 424
HpyCH4III	ACNGT	2 cut(s)	358, 785
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 240, 406, 440, 512, 803, 818
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	283, 499, 506, 635
HspAI	GCGC	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	32, 54, 59, 655
LmnI	GCTCC	3 cut(s)	95, 136, 239
Lsp1109I	GCAGC	2 cut(s)	127, 806
LweI	GCATC	5 cut(s)	118, 255, 351, 793, 821
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	259, 319
MalI	GATC	4 cut(s)	34, 56, 61, 657
MboI	GATC	4 cut(s)	32, 54, 59, 655
MboII	GAAGA	6 cut(s)	60, 129, 182, 406, 577, 580
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	2 cut(s)	59, 655
MhlI	GDGCHC	3 cut(s)	79, 193, 236
MluCI	AATT	7 cut(s)	7, 569, 683, 788, 798, 834, 846
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	56, 154, 166, 321, 390, 501, 540, 727, 752
MroNI	GCCGGC	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	18, 573
MspI	CCGG	2 cut(s)	332, 373
MspR9I	CCNGG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	7 cut(s)	87, 240, 406, 440, 512, 803, 818
NaeI	GCCGGC	1 cut(s)	333
NdeII	GATC	4 cut(s)	32, 54, 59, 655
NgoMIV	GCCGGC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	283, 499, 506, 635
NlaIV	GGNNCC	4 cut(s)	26, 289, 401, 657
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	259, 319
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PaeR7I	CTCGAG	2 cut(s)	72, 709
PagI	TCATGA	2 cut(s)	279, 495
PceI	AGGCCT	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	525
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	117, 250, 442, 796
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	2 cut(s)	79, 236
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	4 cut(s)	26, 289, 401, 657
PspPI	GGNCC	3 cut(s)	24, 288, 399
PspPPI	RGGWCCY	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	59, 655
PsyI	GACNNNGTC	1 cut(s)	286
RigI	GGCCGGCC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	511, 707
RsaNI	GTAC	2 cut(s)	510, 706
SacI	GAGCTC	2 cut(s)	79, 236
SaqAI	TTAA	2 cut(s)	18, 573
SatI	GCNGC	4 cut(s)	116, 249, 441, 795
Sau3AI	GATC	4 cut(s)	32, 54, 59, 655
Sau96I	GGNCC	3 cut(s)	24, 288, 399
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	79, 193, 236
SfaNI	GCATC	5 cut(s)	118, 255, 351, 793, 821
SfcI	CTRYAG	1 cut(s)	753
Sfr274I	CTCGAG	2 cut(s)	72, 709
SinI	GGWCC	2 cut(s)	24, 288
SlaI	CTCGAG	2 cut(s)	72, 709
SmlI	CTYRAG	3 cut(s)	72, 665, 709
SmoI	CTYRAG	3 cut(s)	72, 665, 709
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	7 cut(s)	7, 569, 683, 788, 798, 834, 846
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	6 cut(s)	96, 102, 108, 248, 440, 443
SstI	GAGCTC	2 cut(s)	79, 236
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	358, 785
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	6 cut(s)	73, 224, 230, 366, 392, 710
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	7 cut(s)	7, 569, 683, 788, 798, 834, 846
TatI	WGTACW	2 cut(s)	509, 705
TauI	GCSGC	2 cut(s)	251, 443
Tru1I	TTAA	2 cut(s)	18, 573
Tru9I	TTAA	2 cut(s)	18, 573
TscAI	CASTG	2 cut(s)	193, 522
TseFI	GTSAC	2 cut(s)	259, 319
TseI	GCWGC	2 cut(s)	115, 794
Tsp45I	GTSAC	2 cut(s)	259, 319
TspDTI	ATGAA	3 cut(s)	268, 512, 578
TspRI	CASTG	2 cut(s)	193, 522
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	24, 288
XapI	RAATTY	4 cut(s)	7, 569, 683, 846
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XhoI	CTCGAG	2 cut(s)	72, 709
XmnI	GAANNNNTTC	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.