MD09G1019000.v1.1

ATP synthase mitochondrial F1 complex assembly factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1164310 .. 1166281
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1019000.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGCGAATTTGCTGATCAACAGAACCCTAAAATCAGTCGGAAACCTCAAACTGATCGGATCTCTCTCTTCTCGAGCTCGCCCCTTCAGCTCCACCGCCACCGCTACTTTCGAGCAGCCCCAATCCGACGGCCCATCTTCGTCATTCACCTTCTCCTCGGACGGAAAAGAAGACAAGAATAACAGCAGTGCCCACGATGACAGCATATACGTCAAGTCGCCGTCGAGTTCCAGCTCCAAGAGCGAAGCGGCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCCATCGTGGGAAAGAGATTTTACAAACAGGTGACGACGAGGCCGGCCGACGATGGCAATGGTTGGACTGTGATGCTTGATTACCGGACACTCAAAACGCCATCGAAGAGGCCCCTAAAGCTTCCTACTTTAGCCCTGGCGAAGGCTATTGCGGCAGAATGGGAATACCAGGAAACAGATGGGATTAGGCCCTTTACAATGCCTCTCATGAAGCATGCTTGTACTGCACTGGAAAGAGTTCCTCTCACACGGCCAAAGGTTATAGATTGTTTGATGAAGAAATTCAATCAAGATTTAGTCTTCTGTCGCGCCCCGAACGACAATGATATCACAAGTGTTGTCCATGACCGACAAGTGGAAAAAATGGATCCTTTGCTTGATTGGGTGAAGTCAGAATTTGGCTTCAAGCCTGCTGTGTACTCAAGCTTTTTTGGTGGGAAGCAGGAGGATGGCCTCACAAAGGCTATAGAGACCTTACTAAAACAAACAGATGACTGTGAATTGGCAGCAATTGACGCCATCGCATCATCAGCACACTCGCTAATAATTGCTATTGGAATTTTTCGCGGGAAGTTACAGATTGAAGAAGCAATCGAGTTGATCAGACTCGAAGAAGATATACAGGTGGATAGATGGGGTTTGGTTGAAGGCGGTCATGATGTTGATGCAGCTGATCTCAGGGTACAGATCTCATCAGCTGCTGTATTCTTAGGTCTGTCAAGAAGGATTTAA

Protein Analysis

340

Amino Acids

37.27

Weight (kDa)

6.26

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP12 PF07542 101 - 225 3.3e-30 ATP12 chaperone protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 597, 855
AciI CCGC 6 cut(s) 96, 102, 248, 440, 855, 939
AclWI GGATC 3 cut(s) 67, 650, 663
AcoI YGGCCR 2 cut(s) 333, 539
AcsI RAATTY 4 cut(s) 7, 569, 683, 846
AcuI CTGAAG 1 cut(s) 70
AcyI GRCGYC 2 cut(s) 251, 804
AfaI GTAC 3 cut(s) 511, 707, 972
AfiI CCNNNNNNNGG 3 cut(s) 430, 643, 748
AgsI TTSAA 4 cut(s) 574, 694, 872, 935
AjnI CCWGG 2 cut(s) 423, 456
AluBI AGCT 7 cut(s) 77, 90, 234, 409, 714, 959, 986
AluI AGCT 7 cut(s) 77, 90, 234, 409, 714, 959, 986
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 3 cut(s) 67, 650, 663
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 7 cut(s) 130, 329, 333, 398, 476, 539, 739
ApeKI GCWGC 4 cut(s) 115, 794, 956, 986
ApoI RAATTY 4 cut(s) 7, 569, 683, 846
Asp700I GAANNNNTTC 2 cut(s) 525, 569
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 4 cut(s) 131, 288, 399, 477
AsuHPI GGTGA 4 cut(s) 139, 271, 331, 685
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 193
BamHI GGATCC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 891, 923
BbsI GAAGAC 2 cut(s) 177, 580
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 4 cut(s) 127, 806, 968, 973
BccI CCATC 8 cut(s) 142, 299, 335, 397, 461, 731, 815, 915
BceAI ACGGC 3 cut(s) 145, 205, 554
BciT130I CCWGG 2 cut(s) 425, 458
BclI TGATCA 2 cut(s) 15, 888
BcoDI GTCTC 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 753
BglII AGATCT 1 cut(s) 975
BisI GCNGC 6 cut(s) 116, 249, 441, 795, 957, 987
BlsI GCNGC 6 cut(s) 117, 250, 442, 796, 958, 988
Bme1390I CCNGG 2 cut(s) 425, 458
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 4 cut(s) 131, 288, 399, 477
BmiI GGNNCC 3 cut(s) 289, 401, 657
BmrFI CCNGG 2 cut(s) 425, 458
BmsI GCATC 4 cut(s) 255, 351, 821, 943
BpiI GAAGAC 2 cut(s) 177, 580
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpuEI CTTGAG 1 cut(s) 694
BsaHI GRCGYC 2 cut(s) 251, 804
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 156, 423
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 643, 748
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 2 cut(s) 425, 458
BseDI CCNNGG 2 cut(s) 156, 423
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 3 cut(s) 430, 643, 748
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 979
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 333
BseXI GCAGC 4 cut(s) 127, 806, 968, 973
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 2 cut(s) 597, 855
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 7 cut(s) 132, 331, 335, 400, 478, 541, 741
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 2 cut(s) 332, 373
BslI CCNNNNNNNGG 3 cut(s) 430, 643, 748
BsmAI GTCTC 1 cut(s) 752
BsnI GGCC 7 cut(s) 132, 331, 335, 400, 478, 541, 741
Bso31I GGTCTC 1 cut(s) 752
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 79, 193
Bsp143I GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
BspACI CCGC 6 cut(s) 96, 102, 248, 440, 855, 939
BspANI GGCC 7 cut(s) 132, 331, 335, 400, 478, 541, 741
BspCNI CTCAG 1 cut(s) 978
BspFNI CGCG 2 cut(s) 597, 855
BspHI TCATGA 3 cut(s) 279, 495, 943
BspLI GGNNCC 3 cut(s) 289, 401, 657
BspPI GGATC 3 cut(s) 67, 650, 663
BspTNI GGTCTC 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 1 cut(s) 522
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 156, 423
BssMI GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
BssNI GRCGYC 2 cut(s) 251, 804
Bst2UI CCWGG 2 cut(s) 425, 458
Bst4CI ACNGT 2 cut(s) 358, 785
Bst6I CTCTTC 2 cut(s) 73, 389
BstACI GRCGYC 2 cut(s) 251, 804
BstC8I GCNNGC 4 cut(s) 79, 333, 504, 699
BstDEI CTNAG 2 cut(s) 965, 997
BstENI CCTNNNNNAGG 2 cut(s) 428, 746
BstF5I GGATG 1 cut(s) 742
BstFNI CGCG 2 cut(s) 597, 855
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 7 cut(s) 18, 57, 62, 658, 891, 964, 978
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 7 cut(s) 87, 240, 406, 440, 512, 803, 818
BstNI CCWGG 2 cut(s) 425, 458
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 2 cut(s) 423, 456
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 2 cut(s) 597, 855
BstV1I GCAGC 4 cut(s) 127, 806, 968, 973
BstV2I GAAGAC 2 cut(s) 177, 580
BstX2I RGATCY 3 cut(s) 59, 655, 975
BstYI RGATCY 3 cut(s) 59, 655, 975
BstZI CGGCCG 1 cut(s) 333
BsuRI GGCC 7 cut(s) 132, 331, 335, 400, 478, 541, 741
BtgZI GCGATG 1 cut(s) 793
BtsCI GGATG 1 cut(s) 742
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 193, 515
Cac8I GCNNGC 4 cut(s) 79, 333, 504, 699
CaiI CAGNNNCTG 1 cut(s) 989
CciI TCATGA 3 cut(s) 279, 495, 943
CfoI GCGC 1 cut(s) 599
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 131, 288, 399, 477
CseI GACGC 2 cut(s) 240, 812
Csp6I GTAC 3 cut(s) 510, 706, 971
CviAII CATG 5 cut(s) 280, 496, 503, 632, 944
CviQI GTAC 3 cut(s) 510, 706, 971
DdeI CTNAG 2 cut(s) 965, 997
DpnI GATC 7 cut(s) 17, 56, 61, 657, 890, 963, 977
DpnII GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
EaeI YGGCCR 2 cut(s) 333, 539
EagI CGGCCG 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 73, 389
EarI CTCTTC 2 cut(s) 73, 389
Ecl136II GAGCTC 1 cut(s) 77
EclXI CGGCCG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 752
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 288
Eco52I CGGCCG 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 77
EcoNI CCTNNNNNAGG 2 cut(s) 428, 746
EcoO109I RGGNCCY 2 cut(s) 399, 477
EcoRII CCWGG 2 cut(s) 423, 456
EcoRV GATATC 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 5 cut(s) 283, 499, 506, 635, 947
FatI CATG 5 cut(s) 279, 495, 502, 631, 943
FauI CCCGC 1 cut(s) 848
FbaI TGATCA 2 cut(s) 15, 888
Fnu4HI GCNGC 6 cut(s) 116, 249, 441, 795, 957, 987
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 79
FseI GGCCGGCC 1 cut(s) 335
Fsp4HI GCNGC 6 cut(s) 116, 249, 441, 795, 957, 987
GlaI GCGC 1 cut(s) 598
GluI GCNGC 6 cut(s) 116, 249, 441, 795, 957, 987
HaeIII GGCC 7 cut(s) 132, 331, 335, 400, 478, 541, 741
HapII CCGG 2 cut(s) 332, 373
HgaI GACGC 2 cut(s) 240, 812
HhaI GCGC 1 cut(s) 599
Hin1I GRCGYC 2 cut(s) 251, 804
Hin1II CATG 5 cut(s) 283, 499, 506, 635, 947
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 407, 712
HinfI GANTC 1 cut(s) 894
HpaII CCGG 2 cut(s) 332, 373
HphI GGTGA 4 cut(s) 139, 271, 331, 685
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 6 cut(s) 41, 59, 127, 160, 682, 893
Hpy188III TCNNGA 6 cut(s) 72, 280, 496, 578, 944, 1008
Hpy8I GTNNAC 1 cut(s) 706
Hpy99I CGWCG 6 cut(s) 131, 226, 256, 259, 328, 341
HpyAV CCTTC 5 cut(s) 94, 160, 424, 929, 1005
HpyCH4III ACNGT 2 cut(s) 358, 785
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 515, 956
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 240, 406, 440, 512, 803, 818
HpyF3I CTNAG 2 cut(s) 965, 997
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 251, 804
Hsp92II CATG 5 cut(s) 283, 499, 506, 635, 947
HspAI GCGC 1 cut(s) 597
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Ksp22I TGATCA 2 cut(s) 15, 888
Kzo9I GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
LmnI GCTCC 2 cut(s) 95, 239
Lsp1109I GCAGC 4 cut(s) 127, 806, 968, 973
LweI GCATC 4 cut(s) 255, 351, 821, 943
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 259, 319, 861
MalI GATC 7 cut(s) 17, 56, 61, 657, 890, 963, 977
MboI GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
MboII GAAGA 9 cut(s) 60, 129, 182, 406, 577, 580, 884, 911, 914
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 3 cut(s) 59, 655, 975
MhlI GDGCHC 2 cut(s) 79, 193
MluCI AATT 7 cut(s) 7, 569, 683, 788, 798, 834, 846
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 3 cut(s) 19, 150, 332
MnlI CCTC 8 cut(s) 56, 166, 321, 390, 501, 540, 727, 752
MroNI GCCGGC 1 cut(s) 331
MroXI GAANNNNTTC 2 cut(s) 525, 569
MseI TTAA 1 cut(s) 1018
MspA1I CMGCKG 2 cut(s) 959, 986
MspI CCGG 2 cut(s) 332, 373
MspR9I CCNGG 2 cut(s) 425, 458
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 2 cut(s) 425, 458
MvnI CGCG 2 cut(s) 597, 855
MwoI GCNNNNNNNGC 7 cut(s) 87, 240, 406, 440, 512, 803, 818
NaeI GCCGGC 1 cut(s) 333
NdeII GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 5 cut(s) 283, 499, 506, 635, 947
NlaIV GGNNCC 3 cut(s) 289, 401, 657
NmuCI GTSAC 2 cut(s) 259, 319
NspI RCATGY 1 cut(s) 506
PaeI GCATGC 1 cut(s) 506
PaeR7I CTCGAG 1 cut(s) 72
PagI TCATGA 3 cut(s) 279, 495, 943
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 333
PdmI GAANNNNTTC 2 cut(s) 525, 569
PflFI GACNNNGTC 1 cut(s) 286
PkrI GCNGC 6 cut(s) 117, 250, 442, 796, 958, 988
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 423, 456
PspGI CCWGG 2 cut(s) 423, 456
PspN4I GGNNCC 3 cut(s) 289, 401, 657
PspPI GGNCC 4 cut(s) 131, 288, 399, 477
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 3 cut(s) 59, 655, 975
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 2 cut(s) 959, 986
RigI GGCCGGCC 1 cut(s) 335
RsaI GTAC 3 cut(s) 511, 707, 972
RsaNI GTAC 3 cut(s) 510, 706, 971
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 1018
SatI GCNGC 6 cut(s) 116, 249, 441, 795, 957, 987
Sau3AI GATC 7 cut(s) 15, 54, 59, 655, 888, 961, 975
Sau96I GGNCC 4 cut(s) 131, 288, 399, 477
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 2 cut(s) 425, 458
SduI GDGCHC 2 cut(s) 79, 193
SfaNI GCATC 4 cut(s) 255, 351, 821, 943
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 72, 709
SmoI CTYRAG 2 cut(s) 72, 709
SphI GCATGC 1 cut(s) 506
Sse9I AATT 7 cut(s) 7, 569, 683, 788, 798, 834, 846
SsiI CCGC 6 cut(s) 96, 102, 248, 440, 855, 939
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 423, 456
TaaI ACNGT 2 cut(s) 358, 785
TaiI ACGT 1 cut(s) 213
TaqI TCGA 6 cut(s) 73, 111, 224, 392, 882, 897
TaqII GACCGA 1 cut(s) 651
TasI AATT 7 cut(s) 7, 569, 683, 788, 798, 834, 846
TatI WGTACW 2 cut(s) 509, 705
TauI GCSGC 2 cut(s) 251, 443
Tru1I TTAA 1 cut(s) 1018
Tru9I TTAA 1 cut(s) 1018
TscAI CASTG 2 cut(s) 193, 522
TseFI GTSAC 2 cut(s) 259, 319
TseI GCWGC 4 cut(s) 115, 794, 956, 986
Tsp45I GTSAC 2 cut(s) 259, 319
TspDTI ATGAA 3 cut(s) 268, 512, 578
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 193, 522
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 288
XagI CCTNNNNNAGG 2 cut(s) 428, 746
XapI RAATTY 4 cut(s) 7, 569, 683, 846
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 2 cut(s) 525, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.