Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

69922260 .. 69922989

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0573500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGTCTTGTTTCTGGCGCGATTCCCATTCCAGAAAGCACGATCCAACTGTTCTTCGAATTGGGCTGCCATCCGTTCTGCATCAGGCTTGATCAACAACCTCCTTGTTCAGTCATCTATCTTGCTTTTGGAAGCTTCACAATTTTTTATCAAACCCAGTTCCAAGAATTGGCTTTGGCTCTTGAACTGTCCAATAGGCCATTCCTATGGGTTGTGAGGCCAGAGATCTCTAAAAGTACTCCCTACCCTGAAGGATATGAAGAAAGAGTAGGCTCTAAAGGGTTGATGGTAGGATGGGCCCCCCAGCAGAAGGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGCCACTGTGGTTGGAACTCTACCTTGGAAGGTCTAAGCAATGGGGTTCCTTTCTTGTGTTGGCCATACTTTGCAGACCAGTTCCTTGATGAGAGTTACATTTGTGATGTTTGGAAGGTGGGATTGAAGTTTGATAAGAATGAGAGTGGGATCATTCCTACAGGAGAAATTAACAAGAAGGTGAAACAACTTCTTGGCGATGAAAATTTCAGAGCTAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGTGTCAAAGAAGGTGGCCAGTCTAACAAGATATATAAGAATTTCATTGAGTGGATGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

219

Amino Acids

24.78

Weight (kDa)

6.32

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	38 - 192	4.4e-19	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	97 - 197	2.6e-06	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	20
AclWI	GGATC	2 cut(s)	37, 503
AcoI	YGGCCR	3 cut(s)	407, 585, 610
AcsI	RAATTY	2 cut(s)	550, 634
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	169, 310
AgsI	TTSAA	4 cut(s)	185, 330, 472, 570
AhlI	ACTAGT	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 353, 385
AluBI	AGCT	2 cut(s)	135, 560
AluI	AGCT	2 cut(s)	135, 560
AlwI	GGATC	2 cut(s)	37, 503
AoxI	GGCC	7 cut(s)	197, 218, 297, 318, 407, 585, 610
ApaI	GGGCCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	550, 634
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	3 cut(s)	297, 298, 319
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	3 cut(s)	409, 587, 612
BanII	GRGCYC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	4 cut(s)	78, 280, 288, 330
BclI	TGATCA	1 cut(s)	91
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	561, 594
BfmI	CTRYAG	1 cut(s)	504
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
BmcAI	AGTACT	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	297, 298, 319
BmiI	GGNNCC	3 cut(s)	299, 300, 393
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 310
Bse1I	ACTGG	3 cut(s)	157, 424, 613
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	4 cut(s)	70, 299, 322, 654
BseLI	CCNNNNNNNGG	2 cut(s)	169, 310
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	3 cut(s)	157, 424, 613
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	7 cut(s)	199, 220, 299, 320, 409, 587, 612
BslI	CCNNNNNNNGG	2 cut(s)	169, 310
BsnI	GGCC	7 cut(s)	199, 220, 299, 320, 409, 587, 612
Bsp119I	TTCGAA	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	42, 91, 225, 495
BspANI	GGCC	7 cut(s)	199, 220, 299, 320, 409, 587, 612
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	3 cut(s)	299, 300, 393
BspPI	GGATC	2 cut(s)	37, 503
BspT104I	TTCGAA	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	3 cut(s)	157, 424, 613
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	42, 91, 225, 495
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	51, 189, 353
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	344, 380
BstF5I	GGATG	4 cut(s)	70, 299, 322, 654
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	45, 94, 228, 498
BstMBI	GATC	4 cut(s)	42, 91, 225, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	7 cut(s)	199, 220, 299, 320, 409, 587, 612
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	4 cut(s)	70, 299, 322, 654
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	297, 298, 319
Csp6I	GTAC	1 cut(s)	237
CspCI	CAANNNNNGTGG	4 cut(s)	338, 373, 589, 624
CviAII	CATG	1 cut(s)	589
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	2 cut(s)	344, 380
DpnI	GATC	4 cut(s)	44, 93, 227, 497
DpnII	GATC	4 cut(s)	42, 91, 225, 495
EaeI	YGGCCR	3 cut(s)	407, 585, 610
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	592
FaiI	YATR	7 cut(s)	208, 258, 412, 590, 628, 630, 658
FatI	CATG	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	3 cut(s)	57, 306, 309
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	561, 594
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	67
GsaI	CCCAGC	1 cut(s)	307
HaeIII	GGCC	7 cut(s)	199, 220, 299, 320, 409, 587, 612
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	2 cut(s)	4, 22
HphI	GGTGA	1 cut(s)	538
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	32, 182
HpyAV	CCTTC	7 cut(s)	245, 304, 336, 368, 454, 517, 599
HpyCH4III	ACNGT	3 cut(s)	51, 189, 353
HpyCH4V	TGCA	2 cut(s)	81, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	344, 380
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	42, 91, 225, 495
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	561, 594
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	4 cut(s)	44, 93, 227, 497
MboI	GATC	4 cut(s)	42, 91, 225, 495
MboII	GAAGA	2 cut(s)	46, 272
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	3 cut(s)	409, 587, 612
MluCI	AATT	7 cut(s)	59, 141, 167, 330, 513, 550, 634
MluNI	TGGCCA	3 cut(s)	409, 587, 612
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	70, 338
MnlI	CCTC	2 cut(s)	111, 210
Mox20I	TGGCCA	3 cut(s)	409, 587, 612
MscI	TGGCCA	3 cut(s)	409, 587, 612
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	205
Msp20I	TGGCCA	3 cut(s)	409, 587, 612
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	4 cut(s)	42, 91, 225, 495
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	3 cut(s)	299, 300, 393
NspV	TTCGAA	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	299, 300, 393
PspOMI	GGGCCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	297, 298, 319
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	4 cut(s)	42, 91, 225, 495
Sau96I	GGNCC	3 cut(s)	297, 298, 319
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	9 cut(s)	103, 137, 315, 371, 379, 465, 528, 562, 610
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	7 cut(s)	59, 141, 167, 330, 513, 550, 634
SspMI	CTAG	2 cut(s)	561, 594
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	51, 189, 353
TaqI	TCGA	1 cut(s)	57
TasI	AATT	7 cut(s)	59, 141, 167, 330, 513, 550, 634
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	3 cut(s)	273, 561, 628
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	550, 634
XspI	CTAG	2 cut(s)	561, 594
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.