Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

38553668 .. 38556443

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCAATTTTCTCATAAGCAGAACCCTAAACTCAATCCGAAACCGCAACCTTTTCACCTCCCTATCATCTCTTTCCCGCCAATTCACCTCCGCCGCCACCGCCGCTGCCGAGCAACCCCAATCCGACGGCGGCGAGGGCTCCACCTTCACCTTCTCATCGGACGGCCAAGAACACAAACCCAATCACGATGACAGCATCCAAATCAAACCCAATTCCTCCAAACGCGAAACGGCGTCGTCTTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGATTCTACAACCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGACGGTGATGCTTGATTACCGGACGCTCAAGACTCCGTCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTGGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAGACAGATGGGATTAGGCCGTTTACGATGCCTCTCATGAAGCTTGCTTGCACTGCACTGGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATTTTTGATAAATAGATTCAATCAAGATCTAGTCTTTTGTCGTGCCCCAGATGACAACGATCTGACAAGCGACATCCATGAACGGCAAGTGGAAAAGATTGATCCTTTACTTAATTGGATGGAGTCTGAATTTGGCTTTAAGCCTGTCGTTTACTCCAGCTTTTTTGGTGGAAAGCAGGACGAGGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTACTCTTGGATTATTTCGTGGGAAACTGAATATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGTAGACAGGTGGGGACTGGTTGAAGGTGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATTGCATCGGCTGCTGTATTCCTCGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

336

Amino Acids

37.27

Weight (kDa)

5.64

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	97 - 222	1.2e-30	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	1 cut(s)	228
AciI	CCGC	7 cut(s)	46, 79, 93, 96, 102, 105, 132
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	2 cut(s)	3, 166
AcsI	RAATTY	2 cut(s)	542, 671
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	960
AfiI	CCNNNNNNNGG	2 cut(s)	330, 407
AgsI	TTSAA	5 cut(s)	562, 860, 887, 923, 996
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	397, 490, 702, 740
AluI	AGCT	4 cut(s)	397, 490, 702, 740
Alw26I	GTCTC	2 cut(s)	379, 443
AlwI	GGATC	1 cut(s)	638
AoxI	GGCC	5 cut(s)	3, 166, 321, 420, 464
ApeKI	GCWGC	5 cut(s)	107, 428, 782, 806, 974
ApoI	RAATTY	2 cut(s)	542, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
Asp700I	GAANNNNTTC	3 cut(s)	293, 513, 894
AsuHPI	GGTGA	5 cut(s)	49, 79, 142, 259, 358
BaeGI	GKGCMC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	94, 415, 794, 818, 961
BccI	CCATC	3 cut(s)	333, 449, 655
BceAI	ACGGC	6 cut(s)	145, 181, 249, 451, 542, 641
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	379, 443
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	741
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	8 cut(s)	96, 105, 108, 133, 429, 783, 807, 975
BlsI	GCNGC	8 cut(s)	97, 106, 109, 134, 430, 784, 808, 976
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	6 cut(s)	207, 243, 339, 465, 781, 977
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	682
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	985
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 407
Bse1I	ACTGG	2 cut(s)	510, 921
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	985
BseGI	GGATG	4 cut(s)	198, 344, 615, 666
BseLI	CCNNNNNNNGG	2 cut(s)	330, 407
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	510, 921
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	5 cut(s)	94, 415, 794, 818, 961
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	5, 168, 323, 422, 466
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	2 cut(s)	741, 927
BslI	CCNNNNNNNGG	2 cut(s)	330, 407
BsmAI	GTCTC	2 cut(s)	379, 443
BsmFI	GGGAC	2 cut(s)	741, 927
BsnI	GGCC	5 cut(s)	5, 168, 323, 422, 466
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	143, 589
Bsp143I	GATC	4 cut(s)	568, 601, 643, 949
BspACI	CCGC	7 cut(s)	46, 79, 93, 96, 102, 105, 132
BspANI	GGCC	5 cut(s)	5, 168, 323, 422, 466
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	3 cut(s)	267, 483, 931
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	510, 921
BssECI	CCNNGG	1 cut(s)	985
BssMI	GATC	4 cut(s)	568, 601, 643, 949
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	236
BstAPI	GCANNNNNTGC	2 cut(s)	791, 974
BstC8I	GCNNGC	2 cut(s)	492, 496
BstDEI	CTNAG	2 cut(s)	417, 432
BstF5I	GGATG	4 cut(s)	198, 344, 615, 666
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	4 cut(s)	571, 604, 646, 952
BstMAI	GTCTC	2 cut(s)	379, 443
BstMBI	GATC	4 cut(s)	568, 601, 643, 949
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 104, 138, 428, 500, 791, 806, 974
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	94, 415, 794, 818, 961
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	5, 168, 323, 422, 466
BtsCI	GGATG	4 cut(s)	198, 344, 615, 666
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	498, 503
Cac8I	GCNNGC	2 cut(s)	492, 496
CciI	TCATGA	3 cut(s)	267, 483, 931
CseI	GACGC	2 cut(s)	225, 373
Csp6I	GTAC	1 cut(s)	959
CviAII	CATG	4 cut(s)	268, 484, 620, 932
CviQI	GTAC	1 cut(s)	959
DdeI	CTNAG	2 cut(s)	417, 432
DpnI	GATC	4 cut(s)	570, 603, 645, 951
DpnII	GATC	4 cut(s)	568, 601, 643, 949
EaeI	YGGCCR	2 cut(s)	3, 166
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	776
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	4 cut(s)	271, 487, 623, 935
FaiI	YATR	7 cut(s)	17, 269, 485, 531, 539, 621, 933
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	2 cut(s)	741, 927
FatI	CATG	4 cut(s)	267, 483, 619, 931
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	8 cut(s)	96, 105, 108, 133, 429, 783, 807, 975
FokI	GGATG	4 cut(s)	185, 351, 602, 673
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	8 cut(s)	96, 105, 108, 133, 429, 783, 807, 975
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	8 cut(s)	96, 105, 108, 133, 429, 783, 807, 975
GsuI	CTGGAG	1 cut(s)	682
HaeIII	GGCC	5 cut(s)	5, 168, 323, 422, 466
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	2 cut(s)	225, 373
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	271, 487, 623, 935
HindIII	AAGCTT	2 cut(s)	395, 488
HinfI	GANTC	4 cut(s)	294, 373, 558, 665
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	5 cut(s)	49, 79, 142, 259, 358
Hpy166II	GTNNAC	3 cut(s)	471, 694, 904
Hpy188I	TCNGA	6 cut(s)	41, 127, 163, 402, 606, 670
Hpy188III	TCNNGA	6 cut(s)	188, 268, 370, 484, 566, 932
Hpy8I	GTNNAC	3 cut(s)	471, 694, 904
Hpy99I	CGWCG	5 cut(s)	131, 241, 316, 329, 332
HpyAV	CCTTC	4 cut(s)	157, 163, 313, 917
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	498, 503, 800, 968
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 104, 138, 428, 500, 791, 806, 974
HpyF3I	CTNAG	2 cut(s)	417, 432
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	271, 487, 623, 935
Kzo9I	GATC	4 cut(s)	568, 601, 643, 949
LmnI	GCTCC	2 cut(s)	146, 803
Lsp1109I	GCAGC	5 cut(s)	94, 415, 794, 818, 961
LweI	GCATC	6 cut(s)	207, 243, 339, 465, 781, 977
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	247, 307
MalI	GATC	4 cut(s)	570, 603, 645, 951
MboI	GATC	4 cut(s)	568, 601, 643, 949
MboII	GAAGA	6 cut(s)	234, 301, 769, 872, 899, 902
MfeI	CAATTG	2 cut(s)	786, 867
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	143, 589
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	367, 674
MmeI	TCCRAC	2 cut(s)	150, 425
MnlI	CCTC	9 cut(s)	70, 100, 130, 229, 309, 489, 718, 993, 995
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	293, 513, 894
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	392, 654, 681, 1006
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	2 cut(s)	786, 867
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	8 cut(s)	101, 104, 138, 428, 500, 791, 806, 974
NdeII	GATC	4 cut(s)	568, 601, 643, 949
NlaIII	CATG	4 cut(s)	271, 487, 623, 935
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	247, 307
PagI	TCATGA	3 cut(s)	267, 483, 931
PdmI	GAANNNNTTC	3 cut(s)	293, 513, 894
PfeI	GAWTC	2 cut(s)	294, 558
PflFI	GACNNNGTC	2 cut(s)	274, 376
PkrI	GCNGC	8 cut(s)	97, 106, 109, 134, 430, 784, 808, 976
PleI	GAGTC	2 cut(s)	367, 673
PpsI	GAGTC	2 cut(s)	367, 673
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	568
PsyI	GACNNNGTC	2 cut(s)	274, 376
RsaI	GTAC	1 cut(s)	960
RsaNI	GTAC	1 cut(s)	959
SaqAI	TTAA	4 cut(s)	392, 654, 681, 1006
SatI	GCNGC	8 cut(s)	96, 105, 108, 133, 429, 783, 807, 975
Sau3AI	GATC	4 cut(s)	568, 601, 643, 949
SchI	GAGTC	2 cut(s)	367, 674
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	143, 589
SfaNI	GCATC	6 cut(s)	207, 243, 339, 465, 781, 977
SfcI	CTRYAG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	7 cut(s)	46, 79, 93, 96, 102, 105, 132
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	346
TaqII	GACCGA	1 cut(s)	977
TatI	WGTACW	1 cut(s)	958
TauI	GCSGC	3 cut(s)	98, 107, 135
TfiI	GAWTC	2 cut(s)	294, 558
Tru1I	TTAA	4 cut(s)	392, 654, 681, 1006
Tru9I	TTAA	4 cut(s)	392, 654, 681, 1006
TscAI	CASTG	2 cut(s)	505, 510
TseFI	GTSAC	2 cut(s)	247, 307
TseI	GCWGC	5 cut(s)	107, 428, 782, 806, 974
Tsp45I	GTSAC	2 cut(s)	247, 307
TspDTI	ATGAA	3 cut(s)	256, 500, 636
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	505, 510
Tth111I	GACNNNGTC	2 cut(s)	274, 376
XapI	RAATTY	2 cut(s)	542, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	903
XmnI	GAANNNNTTC	3 cut(s)	293, 513, 894
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.