Rw2G053550

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005675
Physical Location & Seq
Reverse (-)
81300124 .. 81302803
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053550.1

Sequence Viewer

Length: 1128 bp
ATGGCCAACTTCCTGATAAACAGAACCCTAAAATCAATCCCAAACCCCAACCTAATCACCACCGCCCTATCCTCTCGTTCCCGCCAATTCACCTCCGCCGTCGCCACTGCCGCCGAGCAACCCCAATCCGACGGCGGCGAGTCTTCGTCCTCCTCCTCCTTCACCTTCTCATCCGACGGCCAAGACAGTATACACATCAAGCCCTCTTCTTCCATTTCAAAGCGCGAAACGGCGTCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAAATAGATGGGATTAGGCCCTTCACGATGCCTCTCATGAAGCTTGCTTGTACTGCACTTGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATAAATAGATTCAATCAAGATTTAGTCTTTTGTCGCGCCCCGGATGACAATGAGCTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACTTGATTGGCTGGAGTCCGAATTTGGCTTTAAGCCTGTTGTTTACTCCAGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTGTTTCGTGGGAAACTGCAGATTGAAGAAGCAATAGATCTAATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTCTGGTTGAAGGTGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATCAGCTGCTGTATTCCTAGGCTCTTCTTTACAACATTGCACACACAACGGAGGTTGTTTTTTTATATCACAATCACAACAGGCTGTGTCACAGTCATTGCTGCATCCTGCAGAAAATTTTACATTTGAAACTTTCAGAAACTTTTATCCACCAAATTCATAA

Protein Analysis

375

Amino Acids

41.38

Weight (kDa)

5.57

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP12 PF07542 96 - 221 1.9e-30 ATP12 chaperone protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 190, 900
AccII CGCG 2 cut(s) 225, 582
AciI CCGC 6 cut(s) 63, 82, 96, 111, 135, 609
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 2 cut(s) 3, 178
AcsI RAATTY 3 cut(s) 668, 1081, 1120
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 2 cut(s) 496, 957
AfiI CCNNNNNNNGG 2 cut(s) 327, 404
AgsI TTSAA 7 cut(s) 219, 506, 559, 857, 884, 920, 1094
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 7 cut(s) 394, 413, 487, 601, 699, 737, 971
AluI AGCT 7 cut(s) 394, 413, 487, 601, 699, 737, 971
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 635
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 5 cut(s) 3, 178, 318, 417, 461
ApeKI GCWGC 5 cut(s) 425, 779, 803, 971, 1066
ApoI RAATTY 3 cut(s) 668, 1081, 1120
Asp700I GAANNNNTTC 3 cut(s) 290, 510, 891
AspA2I CCTAGG 1 cut(s) 982
AspLEI GCGC 2 cut(s) 225, 584
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 5 cut(s) 49, 82, 154, 256, 355
AvrII CCTAGG 1 cut(s) 982
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 5 cut(s) 412, 791, 815, 958, 1053
BccI CCATC 4 cut(s) 330, 382, 446, 716
BceAI ACGGC 6 cut(s) 83, 148, 193, 246, 539, 638
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 3 cut(s) 738, 848, 1074
BglII AGATCT 1 cut(s) 868
BisI GCNGC 8 cut(s) 111, 136, 426, 610, 780, 804, 972, 1067
BlnI CCTAGG 1 cut(s) 982
BlsI GCNGC 8 cut(s) 112, 137, 427, 611, 781, 805, 973, 1068
Bme1390I CCNGG 2 cut(s) 443, 587
BmgT120I GGNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 443, 587
BmsI GCATC 7 cut(s) 240, 336, 462, 621, 778, 974, 1078
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 2 cut(s) 679, 680
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 585, 982
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 404
Bse3DI GCAATG 3 cut(s) 420, 1000, 1061
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 585, 982
BseGI GGATG 6 cut(s) 170, 341, 595, 612, 727, 1069
BseLI CCNNNNNNNGG 2 cut(s) 327, 404
BseMI GCAATG 3 cut(s) 420, 1000, 1061
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 142, 145
BseXI GCAGC 5 cut(s) 412, 791, 815, 958, 1053
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 2 cut(s) 225, 582
BshFI GGCC 5 cut(s) 5, 180, 320, 419, 463
BsiSI CCGG 1 cut(s) 587
BslI CCNNNNNNNGG 2 cut(s) 327, 404
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 5 cut(s) 5, 180, 320, 419, 463
Bso31I GGTCTC 1 cut(s) 376
Bsp143I GATC 4 cut(s) 640, 868, 946, 960
BspACI CCGC 6 cut(s) 63, 82, 96, 111, 135, 609
BspANI GGCC 5 cut(s) 5, 180, 320, 419, 463
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 2 cut(s) 225, 582
BspHI TCATGA 3 cut(s) 264, 480, 928
BspMAI CTGCAG 2 cut(s) 852, 1078
BspPI GGATC 1 cut(s) 635
BspQI GCTCTTC 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 3 cut(s) 420, 1000, 1061
BssECI CCNNGG 2 cut(s) 585, 982
BssMI GATC 4 cut(s) 640, 868, 946, 960
BssNAI GTATAC 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 982
Bst1107I GTATAC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 188, 1059
Bst6I CTCTTC 3 cut(s) 211, 281, 994
BstACI GRCGYC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 788, 971
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 414, 429
BstF5I GGATG 6 cut(s) 170, 341, 595, 612, 727, 1069
BstFNI CGCG 2 cut(s) 225, 582
BstHHI GCGC 2 cut(s) 225, 584
BstKTI GATC 4 cut(s) 643, 871, 949, 963
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 640, 868, 946, 960
BstMWI GCNNNNNNNGC 6 cut(s) 110, 425, 497, 788, 803, 971
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 441, 585
BstSFI CTRYAG 3 cut(s) 738, 848, 1074
BstUI CGCG 2 cut(s) 225, 582
BstV1I GCAGC 5 cut(s) 412, 791, 815, 958, 1053
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 191
BsuRI GGCC 5 cut(s) 5, 180, 320, 419, 463
BtsCI GGATG 6 cut(s) 170, 341, 595, 612, 727, 1069
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 489
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 3 cut(s) 264, 480, 928
CfoI GCGC 2 cut(s) 225, 584
Cfr13I GGNCC 1 cut(s) 462
CseI GACGC 2 cut(s) 222, 370
Csp6I GTAC 2 cut(s) 495, 956
CviAII CATG 4 cut(s) 265, 481, 617, 929
CviQI GTAC 2 cut(s) 495, 956
DdeI CTNAG 2 cut(s) 414, 429
DpnI GATC 4 cut(s) 642, 870, 948, 962
DpnII GATC 4 cut(s) 640, 868, 946, 960
EaeI YGGCCR 2 cut(s) 3, 178
Eam1104I CTCTTC 3 cut(s) 211, 281, 994
EarI CTCTTC 3 cut(s) 211, 281, 994
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 982
Eco31I GGTCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 982
ErhI CCWWGG 1 cut(s) 982
FaeI CATG 4 cut(s) 268, 484, 620, 932
FaiI YATR 9 cut(s) 191, 266, 482, 528, 536, 618, 930, 1031, 1126
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 4 cut(s) 264, 480, 616, 928
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 2 cut(s) 190, 900
Fnu4HI GCNGC 8 cut(s) 111, 136, 426, 610, 780, 804, 972, 1067
FokI GGATG 6 cut(s) 157, 348, 599, 602, 734, 1056
Fsp4HI GCNGC 8 cut(s) 111, 136, 426, 610, 780, 804, 972, 1067
FspBI CTAG 1 cut(s) 983
GlaI GCGC 2 cut(s) 224, 583
GluI GCNGC 8 cut(s) 111, 136, 426, 610, 780, 804, 972, 1067
GsuI CTGGAG 2 cut(s) 679, 680
HaeIII GGCC 5 cut(s) 5, 180, 320, 419, 463
HapII CCGG 1 cut(s) 587
HgaI GACGC 2 cut(s) 222, 370
HhaI GCGC 2 cut(s) 225, 584
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 4 cut(s) 268, 484, 620, 932
Hin6I GCGC 2 cut(s) 223, 582
HinP1I GCGC 2 cut(s) 223, 582
HindIII AAGCTT 2 cut(s) 392, 485
HinfI GANTC 4 cut(s) 140, 370, 555, 662
HpaII CCGG 1 cut(s) 587
HphI GGTGA 5 cut(s) 49, 82, 154, 256, 355
Hpy166II GTNNAC 3 cut(s) 191, 691, 901
Hpy188I TCNGA 6 cut(s) 130, 175, 360, 399, 667, 1103
Hpy188III TCNNGA 7 cut(s) 13, 265, 367, 469, 481, 563, 929
Hpy8I GTNNAC 3 cut(s) 191, 691, 901
Hpy99I CGWCG 9 cut(s) 104, 134, 179, 238, 241, 244, 313, 326, 329
HpyAV CCTTC 5 cut(s) 169, 175, 310, 475, 914
HpyCH4III ACNGT 2 cut(s) 188, 1059
HpyCH4V TGCA 6 cut(s) 500, 797, 850, 1005, 1069, 1076
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 425, 497, 788, 803, 971
HpyF3I CTNAG 2 cut(s) 414, 429
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 4 cut(s) 268, 484, 620, 932
HspAI GCGC 2 cut(s) 223, 582
Kzo9I GATC 4 cut(s) 640, 868, 946, 960
LguI GCTCTTC 1 cut(s) 994
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 5 cut(s) 412, 791, 815, 958, 1053
LweI GCATC 7 cut(s) 240, 336, 462, 621, 778, 974, 1078
MaeI CTAG 1 cut(s) 983
MaeIII GTNAC 3 cut(s) 244, 304, 1053
MalI GATC 4 cut(s) 642, 870, 948, 962
MboI GATC 4 cut(s) 640, 868, 946, 960
MboII GAAGA 9 cut(s) 135, 198, 201, 298, 766, 869, 896, 899, 981
MfeI CAATTG 2 cut(s) 783, 819
MflI RGATCY 1 cut(s) 868
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 86, 668, 773, 783, 819, 873, 1081, 1120
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 149, 364, 671
MmeI TCCRAC 3 cut(s) 153, 198, 422
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 3 cut(s) 290, 510, 891
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 389, 678
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 2 cut(s) 443, 587
MunI CAATTG 2 cut(s) 783, 819
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 225, 582
MwoI GCNNNNNNNGC 6 cut(s) 110, 425, 497, 788, 803, 971
NciI CCSGG 1 cut(s) 587
NdeII GATC 4 cut(s) 640, 868, 946, 960
NlaIII CATG 4 cut(s) 268, 484, 620, 932
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 3 cut(s) 244, 304, 1053
PagI TCATGA 3 cut(s) 264, 480, 928
PciSI GCTCTTC 1 cut(s) 994
PcsI WCGNNNNNNNCGW 2 cut(s) 236, 245
PdmI GAANNNNTTC 3 cut(s) 290, 510, 891
PfeI GAWTC 1 cut(s) 555
PflFI GACNNNGTC 1 cut(s) 271
PkrI GCNGC 8 cut(s) 112, 137, 427, 611, 781, 805, 973, 1068
PleI GAGTC 3 cut(s) 148, 364, 670
PpsI GAGTC 3 cut(s) 148, 364, 670
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspPI GGNCC 1 cut(s) 462
PstI CTGCAG 2 cut(s) 852, 1078
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 2 cut(s) 496, 957
RsaNI GTAC 2 cut(s) 495, 956
SapI GCTCTTC 1 cut(s) 994
SaqAI TTAA 2 cut(s) 389, 678
SatI GCNGC 8 cut(s) 111, 136, 426, 610, 780, 804, 972, 1067
Sau3AI GATC 4 cut(s) 640, 868, 946, 960
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 3 cut(s) 149, 364, 671
ScrFI CCNGG 2 cut(s) 443, 587
SfaNI GCATC 7 cut(s) 240, 336, 462, 621, 778, 974, 1078
SfcI CTRYAG 3 cut(s) 738, 848, 1074
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 8 cut(s) 86, 668, 773, 783, 819, 873, 1081, 1120
SsiI CCGC 6 cut(s) 63, 82, 96, 111, 135, 609
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 2 cut(s) 441, 585
StyI CCWWGG 1 cut(s) 982
TaaI ACNGT 2 cut(s) 188, 1059
TasI AATT 8 cut(s) 86, 668, 773, 783, 819, 873, 1081, 1120
TatI WGTACW 2 cut(s) 494, 955
TauI GCSGC 3 cut(s) 113, 138, 612
TfiI GAWTC 1 cut(s) 555
Tru1I TTAA 2 cut(s) 389, 678
Tru9I TTAA 2 cut(s) 389, 678
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 3 cut(s) 244, 304, 1053
TseI GCWGC 5 cut(s) 425, 779, 803, 971, 1066
Tsp45I GTSAC 3 cut(s) 244, 304, 1053
TspDTI ATGAA 4 cut(s) 253, 497, 633, 1113
TspGWI ACGGA 1 cut(s) 1029
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 271
XapI RAATTY 3 cut(s) 668, 1081, 1120
XcmI CCANNNNNNNNNTGG 2 cut(s) 449, 651
XmaJI CCTAGG 1 cut(s) 982
XmiI GTMKAC 2 cut(s) 190, 900
XmnI GAANNNNTTC 3 cut(s) 290, 510, 891
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.