Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

1864748 .. 1867794

Gene Structure 3047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCAATTTCCTGATAAACAGAACCCTAAAATCAATCCCAAACCTCAACCTAATCACCACAGCGCTATCCTCTCGTTCCCGCCAATTCACCTCCGCCCCCGCCACCGCCGCCGAGCAACCCCAATCCGACGGCGGCGAGTCTTCGTCCTCCTCCTCCTTCACCTTCTCATCCGACGGCCAAGACAGCATACACATCAAGCCCTCTTCTTCCGTTTCAAAGCGCGAAACGGCGTCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAACCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATAGGACGCTCAAGACTCCGTCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAAACAGATGGGATTAGGCCCTTCACGATGCCTCTCATGAAGCTTGCTTGCACTGCACTTGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATACATAGATTCAATCAAGATTTAGTCTTTTGTCGCGCCCCGGATGACAGTGAGCTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCAATACTTGATTGGCTGGAGTCCGAATTTGGCTTTAAGCCTGTTGTTTACTCCAGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCCGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTGTTTCGTGGGAAACTGCAGATTGAAGAAGCAATAGAGCTAATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTCTGGTTGAAGGTGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATCAGCTGCTGTATTCCTGGGTCTTTCAAGGAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

334

Amino Acids

36.82

Weight (kDa)

5.78

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	96 - 221	7.2e-31	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	900
AccII	CGCG	2 cut(s)	225, 582
AciI	CCGC	7 cut(s)	82, 96, 102, 108, 111, 135, 609
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	2 cut(s)	3, 178
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	773
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	957
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	327, 404
AgsI	TTSAA	7 cut(s)	219, 506, 559, 857, 884, 920, 993
AjnI	CCWGG	2 cut(s)	441, 981
AluBI	AGCT	7 cut(s)	394, 413, 487, 601, 699, 871, 971
AluI	AGCT	7 cut(s)	394, 413, 487, 601, 699, 871, 971
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	974
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	5 cut(s)	3, 178, 318, 417, 461
ApeKI	GCWGC	4 cut(s)	425, 779, 803, 971
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	3 cut(s)	290, 510, 891
AspLEI	GCGC	3 cut(s)	67, 225, 584
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	5 cut(s)	49, 82, 154, 256, 355
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	412, 791, 815, 958
BccI	CCATC	3 cut(s)	330, 446, 716
BceAI	ACGGC	6 cut(s)	148, 193, 246, 539, 638, 722
BciT130I	CCWGG	2 cut(s)	443, 983
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	848
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	7 cut(s)	111, 136, 426, 610, 780, 804, 972
BlsI	GCNGC	7 cut(s)	112, 137, 427, 611, 781, 805, 973
Bme1390I	CCNGG	3 cut(s)	443, 587, 983
BmgT120I	GGNCC	1 cut(s)	462
BmrFI	CCNGG	3 cut(s)	443, 587, 983
BmsI	GCATC	6 cut(s)	240, 336, 462, 621, 778, 974
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	679, 680
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	585, 982
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 404
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	443, 983
BseDI	CCNNGG	2 cut(s)	585, 982
BseGI	GGATG	5 cut(s)	170, 341, 595, 612, 727
BseLI	CCNNNNNNNGG	2 cut(s)	327, 404
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	2 cut(s)	142, 145
BseXI	GCAGC	4 cut(s)	412, 791, 815, 958
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	225, 582
BshFI	GGCC	5 cut(s)	5, 180, 320, 419, 463
BsiSI	CCGG	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	327, 404
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	5 cut(s)	5, 180, 320, 419, 463
Bso31I	GGTCTC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	640, 946, 960
BspACI	CCGC	7 cut(s)	82, 96, 102, 108, 111, 135, 609
BspANI	GGCC	5 cut(s)	5, 180, 320, 419, 463
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	225, 582
BspHI	TCATGA	3 cut(s)	264, 480, 928
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	585, 982
BssMI	GATC	3 cut(s)	640, 946, 960
BssNI	GRCGYC	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	443, 983
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	2 cut(s)	211, 281
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	2 cut(s)	788, 971
BstC8I	GCNNGC	2 cut(s)	489, 493
BstDEI	CTNAG	2 cut(s)	414, 429
BstF5I	GGATG	5 cut(s)	170, 341, 595, 612, 727
BstFNI	CGCG	2 cut(s)	225, 582
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	3 cut(s)	67, 225, 584
BstKTI	GATC	3 cut(s)	643, 949, 963
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	3 cut(s)	640, 946, 960
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 186, 425, 497, 788, 803, 971
BstNI	CCWGG	2 cut(s)	443, 983
BstSCI	CCNGG	3 cut(s)	441, 585, 981
BstSFI	CTRYAG	1 cut(s)	848
BstUI	CGCG	2 cut(s)	225, 582
BstV1I	GCAGC	4 cut(s)	412, 791, 815, 958
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	5 cut(s)	5, 180, 320, 419, 463
BtsCI	GGATG	5 cut(s)	170, 341, 595, 612, 727
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	495, 601
Cac8I	GCNNGC	2 cut(s)	489, 493
CaiI	CAGNNNCTG	1 cut(s)	974
CciI	TCATGA	3 cut(s)	264, 480, 928
CfoI	GCGC	3 cut(s)	67, 225, 584
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	2 cut(s)	222, 370
Csp6I	GTAC	1 cut(s)	956
CviAII	CATG	4 cut(s)	265, 481, 617, 929
CviQI	GTAC	1 cut(s)	956
DdeI	CTNAG	2 cut(s)	414, 429
DpnI	GATC	3 cut(s)	642, 948, 962
DpnII	GATC	3 cut(s)	640, 946, 960
EaeI	YGGCCR	2 cut(s)	3, 178
Eam1104I	CTCTTC	2 cut(s)	211, 281
EarI	CTCTTC	2 cut(s)	211, 281
EciI	GGCGGA	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	376
Eco47III	AGCGCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	441, 981
FaeI	CATG	4 cut(s)	268, 484, 620, 932
FaiI	YATR	9 cut(s)	191, 266, 357, 482, 528, 536, 552, 618, 930
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	4 cut(s)	264, 480, 616, 928
FauI	CCCGC	2 cut(s)	89, 109
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	7 cut(s)	111, 136, 426, 610, 780, 804, 972
FokI	GGATG	5 cut(s)	157, 348, 599, 602, 734
Fsp4HI	GCNGC	7 cut(s)	111, 136, 426, 610, 780, 804, 972
GlaI	GCGC	3 cut(s)	66, 224, 583
GluI	GCNGC	7 cut(s)	111, 136, 426, 610, 780, 804, 972
GsuI	CTGGAG	2 cut(s)	679, 680
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	5 cut(s)	5, 180, 320, 419, 463
HapII	CCGG	1 cut(s)	587
HgaI	GACGC	2 cut(s)	222, 370
HhaI	GCGC	3 cut(s)	67, 225, 584
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	268, 484, 620, 932
Hin6I	GCGC	3 cut(s)	65, 223, 582
HinP1I	GCGC	3 cut(s)	65, 223, 582
HindIII	AAGCTT	2 cut(s)	392, 485
HinfI	GANTC	4 cut(s)	140, 370, 555, 662
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	5 cut(s)	49, 82, 154, 256, 355
Hpy166II	GTNNAC	2 cut(s)	691, 901
Hpy188I	TCNGA	4 cut(s)	130, 175, 399, 667
Hpy188III	TCNNGA	7 cut(s)	13, 265, 367, 469, 481, 563, 929
Hpy8I	GTNNAC	2 cut(s)	691, 901
Hpy99I	CGWCG	8 cut(s)	134, 179, 238, 241, 244, 313, 326, 329
HpyAV	CCTTC	5 cut(s)	169, 175, 310, 475, 914
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4V	TGCA	4 cut(s)	495, 500, 797, 850
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 186, 425, 497, 788, 803, 971
HpyF3I	CTNAG	2 cut(s)	414, 429
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	268, 484, 620, 932
HspAI	GCGC	3 cut(s)	65, 223, 582
Kzo9I	GATC	3 cut(s)	640, 946, 960
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	4 cut(s)	412, 791, 815, 958
LweI	GCATC	6 cut(s)	240, 336, 462, 621, 778, 974
MaeIII	GTNAC	2 cut(s)	244, 304
MalI	GATC	3 cut(s)	642, 948, 962
MboI	GATC	3 cut(s)	640, 946, 960
MboII	GAAGA	8 cut(s)	135, 198, 201, 298, 766, 869, 896, 899
MfeI	CAATTG	2 cut(s)	783, 819
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	7, 86, 668, 773, 783, 819, 873
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	149, 364, 671
MmeI	TCCRAC	3 cut(s)	153, 198, 422
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	290, 510, 891
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	389, 678, 1003
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	3 cut(s)	443, 587, 983
MunI	CAATTG	2 cut(s)	783, 819
MvaI	CCWGG	2 cut(s)	443, 983
MvnI	CGCG	2 cut(s)	225, 582
MwoI	GCNNNNNNNGC	7 cut(s)	110, 186, 425, 497, 788, 803, 971
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	3 cut(s)	640, 946, 960
NlaIII	CATG	4 cut(s)	268, 484, 620, 932
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	244, 304
PagI	TCATGA	3 cut(s)	264, 480, 928
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 245
PdmI	GAANNNNTTC	3 cut(s)	290, 510, 891
PfeI	GAWTC	1 cut(s)	555
PflFI	GACNNNGTC	2 cut(s)	271, 373
PkrI	GCNGC	7 cut(s)	112, 137, 427, 611, 781, 805, 973
PleI	GAGTC	3 cut(s)	148, 364, 670
PpsI	GAGTC	3 cut(s)	148, 364, 670
Psp6I	CCWGG	2 cut(s)	441, 981
PspGI	CCWGG	2 cut(s)	441, 981
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	974
PsyI	GACNNNGTC	2 cut(s)	271, 373
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	957
RsaNI	GTAC	1 cut(s)	956
SaqAI	TTAA	3 cut(s)	389, 678, 1003
SatI	GCNGC	7 cut(s)	111, 136, 426, 610, 780, 804, 972
Sau3AI	GATC	3 cut(s)	640, 946, 960
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	3 cut(s)	149, 364, 671
ScrFI	CCNGG	3 cut(s)	443, 587, 983
SfaNI	GCATC	6 cut(s)	240, 336, 462, 621, 778, 974
SfcI	CTRYAG	1 cut(s)	848
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	7 cut(s)	7, 86, 668, 773, 783, 819, 873
SsiI	CCGC	7 cut(s)	82, 96, 102, 108, 111, 135, 609
StyD4I	CCNGG	3 cut(s)	441, 585, 981
TaaI	ACNGT	1 cut(s)	596
TasI	AATT	7 cut(s)	7, 86, 668, 773, 783, 819, 873
TatI	WGTACW	1 cut(s)	955
TauI	GCSGC	3 cut(s)	113, 138, 612
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	389, 678, 1003
Tru9I	TTAA	3 cut(s)	389, 678, 1003
TscAI	CASTG	2 cut(s)	502, 601
TseFI	GTSAC	2 cut(s)	244, 304
TseI	GCWGC	4 cut(s)	425, 779, 803, 971
Tsp45I	GTSAC	2 cut(s)	244, 304
TspDTI	ATGAA	3 cut(s)	253, 497, 633
TspGWI	ACGGA	2 cut(s)	202, 363
TspRI	CASTG	2 cut(s)	502, 601
Tth111I	GACNNNGTC	2 cut(s)	271, 373
XapI	RAATTY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	2 cut(s)	449, 651
XmiI	GTMKAC	1 cut(s)	900
XmnI	GAANNNNTTC	3 cut(s)	290, 510, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.