Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

87279547 .. 87281497

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG656100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCAATTTCCTGATGAACAGAATCCTAAAATCAATCCCAAACCTCAACCTAATCACCACCGCCCTATCCTCTGGCTCCGCCGCAGCCGCCGCCGAGCAACCCCAATCTGACGGCGGCGAGTCTTCGTCCTCCTCCTCCTTCACCTTCTCATCCGAAGGCCAAGACAGCATACACAACATCAAGCCCTCTTCTTCCGTTTCAAAGCGCGAAACGGCGTCGTCGTGGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAAACAGATGGGATTAGGCCCTTCACGATGCCTCTCATGAAGCTTGCTTGTACTGCACTGGAAAGACTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACCTGATTTGCTGGAGTCCGAATTTGGCTTTAAGCCTGTTGTTTACTCCTGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCAATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGCAGATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTATGGTTGAAGGCGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

287

Amino Acids

31.31

Weight (kDa)

5.18

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	91 - 166	1.1e-21	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	1 cut(s)	210
AciI	CCGC	8 cut(s)	63, 81, 84, 90, 93, 117, 504, 819
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	481, 852
AfiI	CCNNNNNNNGG	2 cut(s)	312, 389
AgsI	TTSAA	4 cut(s)	204, 752, 779, 815
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	379, 398, 472, 632
AluI	AGCT	4 cut(s)	379, 398, 472, 632
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	5 cut(s)	3, 160, 303, 402, 446
ApeKI	GCWGC	4 cut(s)	86, 410, 674, 698
ApoI	RAATTY	1 cut(s)	563
Asp700I	GAANNNNTTC	2 cut(s)	275, 786
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	4 cut(s)	49, 136, 241, 340
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	98, 397, 686, 710
BccI	CCATC	4 cut(s)	315, 367, 431, 611
BceAI	ACGGC	3 cut(s)	130, 231, 533
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	2 cut(s)	633, 743
BisI	GCNGC	9 cut(s)	84, 87, 90, 93, 118, 411, 505, 675, 699
BlsI	GCNGC	9 cut(s)	85, 88, 91, 94, 119, 412, 506, 676, 700
Bme1390I	CCNGG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	5 cut(s)	225, 321, 447, 516, 673
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 389
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	428
BseGI	GGATG	4 cut(s)	152, 326, 507, 622
BseLI	CCNNNNNNNGG	2 cut(s)	312, 389
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	2 cut(s)	124, 127
BseXI	GCAGC	4 cut(s)	98, 397, 686, 710
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	5 cut(s)	5, 162, 305, 404, 448
BslI	CCNNNNNNNGG	2 cut(s)	312, 389
BsmAI	GTCTC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	5, 162, 305, 404, 448
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	535, 841, 855
BspACI	CCGC	8 cut(s)	63, 81, 84, 90, 93, 117, 504, 819
BspANI	GGCC	5 cut(s)	5, 162, 305, 404, 448
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	3 cut(s)	249, 465, 823
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	535, 841, 855
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	196, 266
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	399, 414
BstF5I	GGATG	4 cut(s)	152, 326, 507, 622
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	538, 844, 858
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	535, 841, 855
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 92, 168, 410, 482, 683, 698
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	633, 743
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	98, 397, 686, 710
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	5 cut(s)	5, 162, 305, 404, 448
BtsCI	GGATG	4 cut(s)	152, 326, 507, 622
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	3 cut(s)	249, 465, 823
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	2 cut(s)	207, 355
Csp6I	GTAC	2 cut(s)	480, 851
CviAII	CATG	4 cut(s)	250, 466, 512, 824
CviQI	GTAC	2 cut(s)	480, 851
DdeI	CTNAG	2 cut(s)	399, 414
DpnI	GATC	3 cut(s)	537, 843, 857
DpnII	GATC	3 cut(s)	535, 841, 855
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	196, 266
EarI	CTCTTC	2 cut(s)	196, 266
EciI	GGCGGA	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	253, 469, 515, 827
FaiI	YATR	7 cut(s)	173, 251, 467, 513, 809, 825, 862
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	4 cut(s)	249, 465, 511, 823
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	9 cut(s)	84, 87, 90, 93, 118, 411, 505, 675, 699
FokI	GGATG	4 cut(s)	139, 333, 494, 629
Fsp4HI	GCNGC	9 cut(s)	84, 87, 90, 93, 118, 411, 505, 675, 699
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	9 cut(s)	84, 87, 90, 93, 118, 411, 505, 675, 699
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	5, 162, 305, 404, 448
HgaI	GACGC	2 cut(s)	207, 355
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	253, 469, 515, 827
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	377, 470
HinfI	GANTC	4 cut(s)	24, 122, 355, 557
HphI	GGTGA	4 cut(s)	49, 136, 241, 340
Hpy166II	GTNNAC	2 cut(s)	586, 796
Hpy188I	TCNGA	5 cut(s)	112, 157, 345, 384, 562
Hpy188III	TCNNGA	6 cut(s)	13, 250, 352, 454, 466, 824
Hpy8I	GTNNAC	2 cut(s)	586, 796
Hpy99I	CGWCG	5 cut(s)	223, 226, 298, 311, 314
HpyAV	CCTTC	6 cut(s)	151, 152, 157, 295, 460, 809
HpyCH4V	TGCA	4 cut(s)	485, 686, 692, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 92, 168, 410, 482, 683, 698
HpyF3I	CTNAG	2 cut(s)	399, 414
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	253, 469, 515, 827
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	535, 841, 855
LmnI	GCTCC	2 cut(s)	83, 695
Lsp1109I	GCAGC	4 cut(s)	98, 397, 686, 710
LweI	GCATC	5 cut(s)	225, 321, 447, 516, 673
MaeIII	GTNAC	2 cut(s)	229, 289
MalI	GATC	3 cut(s)	537, 843, 857
MboI	GATC	3 cut(s)	535, 841, 855
MboII	GAAGA	8 cut(s)	117, 183, 186, 283, 661, 764, 791, 794
MfeI	CAATTG	4 cut(s)	678, 687, 714, 759
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	7, 563, 668, 678, 687, 714, 759
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	131, 349, 566
MmeI	TCCRAC	1 cut(s)	407
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	275, 786
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	374, 573
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	4 cut(s)	678, 687, 714, 759
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	7 cut(s)	89, 92, 168, 410, 482, 683, 698
NdeII	GATC	3 cut(s)	535, 841, 855
NlaIII	CATG	4 cut(s)	253, 469, 515, 827
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	229, 289
PagI	TCATGA	3 cut(s)	249, 465, 823
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 230
PdmI	GAANNNNTTC	2 cut(s)	275, 786
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	9 cut(s)	85, 88, 91, 94, 119, 412, 506, 676, 700
PleI	GAGTC	3 cut(s)	130, 349, 565
PpsI	GAGTC	3 cut(s)	130, 349, 565
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	447
PstI	CTGCAG	1 cut(s)	747
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	481, 852
RsaNI	GTAC	2 cut(s)	480, 851
SaqAI	TTAA	2 cut(s)	374, 573
SatI	GCNGC	9 cut(s)	84, 87, 90, 93, 118, 411, 505, 675, 699
Sau3AI	GATC	3 cut(s)	535, 841, 855
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	3 cut(s)	131, 349, 566
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	5 cut(s)	225, 321, 447, 516, 673
SfcI	CTRYAG	2 cut(s)	633, 743
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	7 cut(s)	7, 563, 668, 678, 687, 714, 759
SsiI	CCGC	8 cut(s)	63, 81, 84, 90, 93, 117, 504, 819
StyD4I	CCNGG	1 cut(s)	426
TasI	AATT	7 cut(s)	7, 563, 668, 678, 687, 714, 759
TatI	WGTACW	2 cut(s)	479, 850
TauI	GCSGC	5 cut(s)	86, 92, 95, 120, 507
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	374, 573
Tru9I	TTAA	2 cut(s)	374, 573
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	2 cut(s)	229, 289
TseI	GCWGC	4 cut(s)	86, 410, 674, 698
Tsp45I	GTSAC	2 cut(s)	229, 289
TspDTI	ATGAA	4 cut(s)	32, 238, 482, 528
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	795
XmnI	GAANNNNTTC	2 cut(s)	275, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.