Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

38560110 .. 38562707

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGATTCTACAACCAAGTGACGACGAGGAAGGCCGACGACGGTAATGGATGGACGGTGATGCTTGATTACCGGACGCTCAAGACTCCGTCGAAGAGATCCTTAAAGCTTCCGACTTTGGGTTTGGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGAGACAGATGGGATTTGGCCGTTTATGATGCCTCTCATGAAGCTTGTTTGTACTGCACTGGAACGAGTTCCTATCACACGGCATAAGGTTATAGAATTCTTGATAAATAGATTCAATCAAGATCTAGTCTTTTGTCGTGCCCCAGATGACAACGAGCTGACAAGTGACATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACTTGATTGGATGGAGTCTGAATTTGGCTTTAAGCCTGTCGTTTACTCCAGCTTTTGTGGTGGAAAGCATGATGAGGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGAATATTGAAGAACCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTCTGGTTGAAGGTGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATCGGCTGCTGTATTCCTAGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

252

Amino Acids

28.26

Weight (kDa)

5.25

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	13 - 138	7.4e-30	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	651
AclWI	GGATC	2 cut(s)	129, 386
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	290, 419
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	247, 708
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	310, 608, 635, 671, 744
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	5 cut(s)	145, 238, 352, 450, 488
AluI	AGCT	5 cut(s)	145, 238, 352, 450, 488
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	129, 386
AoxI	GGCC	3 cut(s)	69, 168, 212
ApeKI	GCWGC	4 cut(s)	176, 530, 554, 722
ApoI	RAATTY	2 cut(s)	290, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
Asp700I	GAANNNNTTC	3 cut(s)	41, 261, 642
AspA2I	CCTAGG	1 cut(s)	733
AsuHPI	GGTGA	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	733
BaeGI	GKGCMC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	29, 61
BbvI	GCAGC	4 cut(s)	163, 542, 566, 709
BccI	CCATC	3 cut(s)	81, 197, 403
BceAI	ACGGC	3 cut(s)	199, 290, 389
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	320, 734
BfmI	CTRYAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	177, 531, 555, 723
BlnI	CCTAGG	1 cut(s)	733
BlsI	GCNGC	4 cut(s)	178, 532, 556, 724
Bme1390I	CCNGG	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	4 cut(s)	87, 213, 529, 725
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	3 cut(s)	92, 363, 414
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	163, 542, 566, 709
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	71, 170, 214
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	71, 170, 214
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	5 cut(s)	134, 316, 391, 697, 711
BspANI	GGCC	3 cut(s)	71, 170, 214
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	3 cut(s)	15, 231, 679
BspPI	GGATC	2 cut(s)	129, 386
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	5 cut(s)	134, 316, 391, 697, 711
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	80, 94
Bst6I	CTCTTC	2 cut(s)	32, 125
BstAPI	GCANNNNNTGC	2 cut(s)	539, 722
BstDEI	CTNAG	2 cut(s)	165, 180
BstF5I	GGATG	3 cut(s)	92, 363, 414
BstKTI	GATC	5 cut(s)	137, 319, 394, 700, 714
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	134, 316, 391, 697, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 539, 554, 722
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	163, 542, 566, 709
BstX2I	RGATCY	2 cut(s)	134, 316
BstYI	RGATCY	2 cut(s)	134, 316
BsuRI	GGCC	3 cut(s)	71, 170, 214
BtsCI	GGATG	3 cut(s)	92, 363, 414
BtsIMutI	CAGTG	1 cut(s)	251
CciI	TCATGA	3 cut(s)	15, 231, 679
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	246, 707
CviAII	CATG	5 cut(s)	16, 232, 368, 467, 680
CviQI	GTAC	2 cut(s)	246, 707
DdeI	CTNAG	2 cut(s)	165, 180
DpnI	GATC	5 cut(s)	136, 318, 393, 699, 713
DpnII	GATC	5 cut(s)	134, 316, 391, 697, 711
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	32, 125
EarI	CTCTTC	2 cut(s)	32, 125
Eco130I	CCWWGG	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	5 cut(s)	19, 235, 371, 470, 683
FaiI	YATR	8 cut(s)	17, 221, 233, 279, 287, 369, 468, 681
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	5 cut(s)	15, 231, 367, 466, 679
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	177, 531, 555, 723
FokI	GGATG	3 cut(s)	99, 350, 421
Fsp4HI	GCNGC	4 cut(s)	177, 531, 555, 723
FspBI	CTAG	2 cut(s)	320, 734
GluI	GCNGC	4 cut(s)	177, 531, 555, 723
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	71, 170, 214
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	5 cut(s)	19, 235, 371, 470, 683
HindIII	AAGCTT	2 cut(s)	143, 236
HinfI	GANTC	4 cut(s)	42, 121, 306, 413
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	442, 652
Hpy188I	TCNGA	2 cut(s)	150, 418
Hpy188III	TCNNGA	6 cut(s)	16, 118, 232, 295, 314, 680
Hpy8I	GTNNAC	2 cut(s)	442, 652
Hpy99I	CGWCG	4 cut(s)	64, 77, 80, 130
HpyAV	CCTTC	2 cut(s)	61, 665
HpyCH4III	ACNGT	2 cut(s)	80, 94
HpyCH4V	TGCA	2 cut(s)	251, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 539, 554, 722
HpyF3I	CTNAG	2 cut(s)	165, 180
Hsp92II	CATG	5 cut(s)	19, 235, 371, 470, 683
Kzo9I	GATC	5 cut(s)	134, 316, 391, 697, 711
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	4 cut(s)	163, 542, 566, 709
LweI	GCATC	4 cut(s)	87, 213, 529, 725
MaeI	CTAG	2 cut(s)	320, 734
MaeIII	GTNAC	2 cut(s)	55, 359
MalI	GATC	5 cut(s)	136, 318, 393, 699, 713
MboI	GATC	5 cut(s)	134, 316, 391, 697, 711
MboII	GAAGA	6 cut(s)	49, 142, 517, 620, 647, 650
MfeI	CAATTG	3 cut(s)	534, 570, 615
MflI	RGATCY	2 cut(s)	134, 316
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	6 cut(s)	290, 419, 524, 534, 570, 615
MlyI	GAGTC	2 cut(s)	115, 422
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	57, 237, 466, 741
MroXI	GAANNNNTTC	3 cut(s)	41, 261, 642
MseI	TTAA	3 cut(s)	140, 429, 754
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	3 cut(s)	534, 570, 615
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	176, 539, 554, 722
NdeII	GATC	5 cut(s)	134, 316, 391, 697, 711
NlaIII	CATG	5 cut(s)	19, 235, 371, 470, 683
NmuCI	GTSAC	2 cut(s)	55, 359
PagI	TCATGA	3 cut(s)	15, 231, 679
PdmI	GAANNNNTTC	3 cut(s)	41, 261, 642
PfeI	GAWTC	2 cut(s)	42, 306
PflFI	GACNNNGTC	2 cut(s)	22, 124
PkrI	GCNGC	4 cut(s)	178, 532, 556, 724
PleI	GAGTC	2 cut(s)	115, 421
PpsI	GAGTC	2 cut(s)	115, 421
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	134, 316
PsyI	GACNNNGTC	2 cut(s)	22, 124
RsaI	GTAC	2 cut(s)	247, 708
RsaNI	GTAC	2 cut(s)	246, 707
SaqAI	TTAA	3 cut(s)	140, 429, 754
SatI	GCNGC	4 cut(s)	177, 531, 555, 723
Sau3AI	GATC	5 cut(s)	134, 316, 391, 697, 711
SchI	GAGTC	2 cut(s)	115, 422
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	147, 240, 285, 354, 452, 490, 651, 676, 739
SfaNI	GCATC	4 cut(s)	87, 213, 529, 725
SfcI	CTRYAG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	290, 419, 524, 534, 570, 615
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	320, 734
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	2 cut(s)	80, 94
TaqI	TCGA	1 cut(s)	128
TasI	AATT	6 cut(s)	290, 419, 524, 534, 570, 615
TatI	WGTACW	2 cut(s)	245, 706
TfiI	GAWTC	2 cut(s)	42, 306
Tru1I	TTAA	3 cut(s)	140, 429, 754
Tru9I	TTAA	3 cut(s)	140, 429, 754
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	55, 359
TseI	GCWGC	4 cut(s)	176, 530, 554, 722
Tsp45I	GTSAC	2 cut(s)	55, 359
TspDTI	ATGAA	3 cut(s)	4, 248, 384
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	258
Tth111I	GACNNNGTC	2 cut(s)	22, 124
XapI	RAATTY	2 cut(s)	290, 419
XcmI	CCANNNNNNNNNTGG	2 cut(s)	200, 402
XmaJI	CCTAGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	3 cut(s)	41, 261, 642
XspI	CTAG	2 cut(s)	320, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.