Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

86902866 .. 86905063

Gene Structure 2198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCAATTTCCTGATGGACAGAATCCTAAAATCAATCCCAAACCTCAACCTAATCACCACCGCCCTATCCTCTGGCTCCGCCGCAGCCGCCGCCGAGCAACCCCAATCTGACGGTGGCGAGTCTTCGTCCTCCTCCTCCTTCACCTTCTCATCCGAAGGCCAAGACAGCATACACAACATCACGGCGTCGTCGTGGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCCGACTTTGGGGTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGCCCTTCACGATGCCTTTCATGAAGCTTGCTCAGTTGCTTGTACTGCACTGGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATAAATAGATTCAATCAAGATTTAGTCTTTTGTCGCGCGCCAGATGACAATGAGCTGACAAGCGGCATCCATGTGGACGTGCTGCAGAGTAAATGTTCTAGCTACAAAAGCCCCTTTATGATCACTGAACGGCAAGTGGAAAAGATTGATCCATTACCTGATTTGCTGGAGTCCGAATTTGGCTTTAAGCCTGTTGTTTACTCCTGCTTTTTTGGTGGAAAGCATGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGCAGATTAAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGGAGACAAGTGGGGTATGGTTGAAGGCGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCACATCAGCTGCTGTATTCCTAGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

334

Amino Acids

36.64

Weight (kDa)

5.45

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	81 - 184	2.1e-21	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	528, 530
AciI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 555, 924
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	773
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	442, 957
AfiI	CCNNNNNNNGG	2 cut(s)	282, 359
AgsI	TTSAA	4 cut(s)	505, 884, 920, 993
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	7 cut(s)	349, 368, 425, 547, 594, 737, 971
AluI	AGCT	7 cut(s)	349, 368, 425, 547, 594, 737, 971
Alw26I	GTCTC	2 cut(s)	331, 894
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	974
AoxI	GGCC	5 cut(s)	3, 160, 273, 372, 399
ApeKI	GCWGC	6 cut(s)	86, 380, 574, 779, 803, 971
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	3 cut(s)	245, 456, 891
AspA2I	CCTAGG	1 cut(s)	982
AspLEI	GCGC	2 cut(s)	530, 532
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	49, 136, 211, 310
AvrII	CCTAGG	1 cut(s)	982
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	6 cut(s)	98, 367, 561, 791, 815, 958
BccI	CCATC	4 cut(s)	10, 285, 337, 716
BceAI	ACGGC	3 cut(s)	201, 485, 638
BciT130I	CCWGG	1 cut(s)	398
BclI	TGATCA	1 cut(s)	612
BcoDI	GTCTC	2 cut(s)	331, 894
BfaI	CTAG	2 cut(s)	591, 983
BfmI	CTRYAG	3 cut(s)	575, 738, 848
BlnI	CCTAGG	1 cut(s)	982
Bme1390I	CCNGG	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	5 cut(s)	195, 291, 400, 567, 778
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	982
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 359
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	982
BseGI	GGATG	4 cut(s)	152, 296, 558, 727
BseLI	CCNNNNNNNGG	2 cut(s)	282, 359
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	375, 444
BseNI	ACTGG	1 cut(s)	453
BsePI	GCGCGC	1 cut(s)	528
BseRI	GAGGAG	2 cut(s)	124, 127
BseXI	GCAGC	6 cut(s)	98, 367, 561, 791, 815, 958
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	2 cut(s)	528, 530
BshFI	GGCC	5 cut(s)	5, 162, 275, 374, 401
BslI	CCNNNNNNNGG	2 cut(s)	282, 359
BsmAI	GTCTC	2 cut(s)	331, 894
BsnI	GGCC	5 cut(s)	5, 162, 275, 374, 401
Bso31I	GGTCTC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	612, 640, 946, 960
BspACI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 555, 924
BspANI	GGCC	5 cut(s)	5, 162, 275, 374, 401
BspCNI	CTCAG	2 cut(s)	376, 443
BspFNI	CGCG	2 cut(s)	528, 530
BspHI	TCATGA	3 cut(s)	219, 418, 928
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	2 cut(s)	579, 852
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	982
BssHII	GCGCGC	1 cut(s)	528
BssMI	GATC	4 cut(s)	612, 640, 946, 960
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	982
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	427, 530
BstDEI	CTNAG	3 cut(s)	369, 384, 430
BstF5I	GGATG	4 cut(s)	152, 296, 558, 727
BstFNI	CGCG	2 cut(s)	528, 530
BstHHI	GCGC	2 cut(s)	530, 532
BstKTI	GATC	4 cut(s)	615, 643, 949, 963
BstMAI	GTCTC	2 cut(s)	331, 894
BstMBI	GATC	4 cut(s)	612, 640, 946, 960
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 380, 443, 600, 788, 803
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	3 cut(s)	575, 738, 848
BstUI	CGCG	2 cut(s)	528, 530
BstV1I	GCAGC	6 cut(s)	98, 367, 561, 791, 815, 958
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	5 cut(s)	5, 162, 275, 374, 401
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	4 cut(s)	152, 296, 558, 727
BtsIMutI	CAGTG	2 cut(s)	446, 615
Cac8I	GCNNGC	2 cut(s)	427, 530
CaiI	CAGNNNCTG	1 cut(s)	974
CciI	TCATGA	3 cut(s)	219, 418, 928
CfoI	GCGC	2 cut(s)	530, 532
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	2 cut(s)	177, 325
Csp6I	GTAC	2 cut(s)	441, 956
CviAII	CATG	5 cut(s)	220, 419, 563, 716, 929
CviQI	GTAC	2 cut(s)	441, 956
DdeI	CTNAG	3 cut(s)	369, 384, 430
DpnI	GATC	4 cut(s)	614, 642, 948, 962
DpnII	GATC	4 cut(s)	612, 640, 946, 960
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	5 cut(s)	223, 422, 566, 719, 932
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	5 cut(s)	219, 418, 562, 715, 928
FbaI	TGATCA	1 cut(s)	612
FokI	GGATG	4 cut(s)	139, 303, 545, 734
FspBI	CTAG	2 cut(s)	591, 983
GlaI	GCGC	2 cut(s)	529, 531
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	5 cut(s)	5, 162, 275, 374, 401
HgaI	GACGC	2 cut(s)	177, 325
HhaI	GCGC	2 cut(s)	530, 532
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	5 cut(s)	223, 422, 566, 719, 932
Hin6I	GCGC	2 cut(s)	528, 530
HinP1I	GCGC	2 cut(s)	528, 530
HindIII	AAGCTT	2 cut(s)	347, 423
HinfI	GANTC	5 cut(s)	24, 122, 325, 501, 662
HphI	GGTGA	4 cut(s)	49, 136, 211, 310
Hpy166II	GTNNAC	2 cut(s)	568, 691
Hpy188I	TCNGA	5 cut(s)	112, 157, 315, 354, 667
Hpy188III	TCNNGA	7 cut(s)	13, 220, 322, 407, 419, 509, 929
Hpy8I	GTNNAC	2 cut(s)	568, 691
Hpy99I	CGWCG	5 cut(s)	193, 196, 268, 281, 284
HpyAV	CCTTC	6 cut(s)	151, 152, 157, 265, 413, 914
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	4 cut(s)	446, 577, 797, 850
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 380, 443, 600, 788, 803
HpyF3I	CTNAG	3 cut(s)	369, 384, 430
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	5 cut(s)	223, 422, 566, 719, 932
HspAI	GCGC	2 cut(s)	528, 530
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	612, 640, 946, 960
LmnI	GCTCC	2 cut(s)	83, 800
Lsp1109I	GCAGC	6 cut(s)	98, 367, 561, 791, 815, 958
LweI	GCATC	5 cut(s)	195, 291, 400, 567, 778
MaeI	CTAG	2 cut(s)	591, 983
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	199, 259
MalI	GATC	4 cut(s)	614, 642, 948, 962
MboI	GATC	4 cut(s)	612, 640, 946, 960
MboII	GAAGA	5 cut(s)	117, 253, 766, 896, 899
MfeI	CAATTG	3 cut(s)	783, 819, 864
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	7, 668, 773, 783, 819, 864
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	131, 319, 671
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	9 cut(s)	56, 82, 142, 145, 148, 237, 261, 712, 990
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	245, 456, 891
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	344, 678, 855, 1003
MslI	CAYNNNNRTG	2 cut(s)	563, 720
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	971
MspR9I	CCNGG	1 cut(s)	398
MunI	CAATTG	3 cut(s)	783, 819, 864
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	528, 530
MwoI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 380, 443, 600, 788, 803
NdeII	GATC	4 cut(s)	612, 640, 946, 960
NlaIII	CATG	5 cut(s)	223, 422, 566, 719, 932
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	199, 259
PagI	TCATGA	3 cut(s)	219, 418, 928
PauI	GCGCGC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	191, 200
PdmI	GAANNNNTTC	3 cut(s)	245, 456, 891
PfeI	GAWTC	2 cut(s)	24, 501
PflFI	GACNNNGTC	1 cut(s)	226
PleI	GAGTC	3 cut(s)	130, 319, 670
PpsI	GAGTC	3 cut(s)	130, 319, 670
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	2 cut(s)	579, 852
PstNI	CAGNNNCTG	1 cut(s)	974
PsyI	GACNNNGTC	1 cut(s)	226
PteI	GCGCGC	1 cut(s)	528
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	2 cut(s)	442, 957
RsaNI	GTAC	2 cut(s)	441, 956
RseI	CAYNNNNRTG	2 cut(s)	563, 720
SaqAI	TTAA	4 cut(s)	344, 678, 855, 1003
Sau3AI	GATC	4 cut(s)	612, 640, 946, 960
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	3 cut(s)	131, 319, 671
ScrFI	CCNGG	1 cut(s)	398
SfaNI	GCATC	5 cut(s)	195, 291, 400, 567, 778
SfcI	CTRYAG	3 cut(s)	575, 738, 848
SmiMI	CAYNNNNRTG	2 cut(s)	563, 720
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	6 cut(s)	7, 668, 773, 783, 819, 864
SsiI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 555, 924
SspMI	CTAG	2 cut(s)	591, 983
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	573
TasI	AATT	6 cut(s)	7, 668, 773, 783, 819, 864
TatI	WGTACW	2 cut(s)	440, 955
TauI	GCSGC	4 cut(s)	86, 92, 95, 558
TfiI	GAWTC	2 cut(s)	24, 501
Tru1I	TTAA	4 cut(s)	344, 678, 855, 1003
Tru9I	TTAA	4 cut(s)	344, 678, 855, 1003
TscAI	CASTG	2 cut(s)	453, 622
TseFI	GTSAC	2 cut(s)	199, 259
TseI	GCWGC	6 cut(s)	86, 380, 574, 779, 803, 971
Tsp45I	GTSAC	2 cut(s)	199, 259
TspDTI	ATGAA	3 cut(s)	208, 407, 435
TspRI	CASTG	2 cut(s)	453, 622
Tth111I	GACNNNGTC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	2 cut(s)	13, 113
XmaJI	CCTAGG	1 cut(s)	982
XmnI	GAANNNNTTC	3 cut(s)	245, 456, 891
XspI	CTAG	2 cut(s)	591, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.