Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

43871 .. 45868

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgccgatgtcgttcatgacggggtcggtggtggggaagaggttctacaaccaagtgacgacgaggaaggccgacgacgggaatggatggtcggtgatgcttgattatcggacgctcaagactccatcaaagagacccttaaagcttccgactttgggtttagctaaggccattgctgctgagtgggaataccaggaaatagatgggattaggcccttcacgatgcctctcatgaagcttgcttgtactgcacttgaaagagttcctatcacacggcataaggttatagaatacttgataaatagattcaatcaagatttagtcttttgtcgcgccccggatgacaatgagctgacaagcggcatccatgaacggcaagtggaaaagattgatccattacttgattggctggagtccgaatttggctttaggcctgttgtttactccagcttttttggtggaaagcaggaggatggacttctaaaagctgtagaaaccctactgaagaaaacagatgagtgtgaattggcagcaattgatgctattgcaggagcagcacactccctaacaattgctcttggattgtttcgtgggaaactgcagattgaagaagcaatagatctaattagacttgaagaagattttcaggtagacaagtggggtctggttgaaggtggtcatgatgtagatattgctgatctcaaagtacagatcgcatcagctgctgtattcctaggtctttcaaggaggatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

251

Amino Acids

28.17

Weight (kDa)

5.38

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	333
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	247, 708
AfiI	CCNNNNNNNGG	2 cut(s)	78, 155
AgsI	TTSAA	6 cut(s)	257, 310, 608, 635, 671, 744
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	7 cut(s)	145, 164, 238, 352, 450, 488, 722
AluI	AGCT	7 cut(s)	145, 164, 238, 352, 450, 488, 722
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	4 cut(s)	69, 168, 212, 431
ApeKI	GCWGC	4 cut(s)	176, 530, 554, 722
ApoI	RAATTY	1 cut(s)	419
Asp700I	GAANNNNTTC	3 cut(s)	41, 261, 642
AspA2I	CCTAGG	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	733
BarI	GAAGNNNNNNTAC	2 cut(s)	29, 61
BbvI	GCAGC	4 cut(s)	163, 542, 566, 709
BccI	CCATC	4 cut(s)	81, 133, 197, 467
BceAI	ACGGC	2 cut(s)	290, 389
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	734
BfmI	CTRYAG	2 cut(s)	489, 599
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	5 cut(s)	177, 361, 531, 555, 723
BlnI	CCTAGG	1 cut(s)	733
BlsI	GCNGC	5 cut(s)	178, 362, 532, 556, 724
Bme1390I	CCNGG	2 cut(s)	194, 338
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	194, 338
BmsI	GCATC	5 cut(s)	87, 213, 372, 529, 725
BpmI	CTGGAG	2 cut(s)	430, 431
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	336, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 155
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	336, 733
BseGI	GGATG	4 cut(s)	92, 346, 363, 478
BseLI	CCNNNNNNNGG	2 cut(s)	78, 155
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	163, 542, 566, 709
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	71, 170, 214, 433
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	78, 155
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	71, 170, 214, 433
Bso31I	GGTCTC	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	391, 619, 697, 711
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	4 cut(s)	71, 170, 214, 433
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	3 cut(s)	15, 231, 679
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	336, 733
BssMI	GATC	4 cut(s)	391, 619, 697, 711
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	539, 722
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	165, 180
BstF5I	GGATG	4 cut(s)	92, 346, 363, 478
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	4 cut(s)	394, 622, 700, 714
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	4 cut(s)	391, 619, 697, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 248, 539, 554, 722
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	192, 336
BstSFI	CTRYAG	2 cut(s)	489, 599
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	163, 542, 566, 709
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	4 cut(s)	71, 170, 214, 433
BtsCI	GGATG	4 cut(s)	92, 346, 363, 478
Cac8I	GCNNGC	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	3 cut(s)	15, 231, 679
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	246, 707
CviAII	CATG	4 cut(s)	16, 232, 368, 680
CviQI	GTAC	2 cut(s)	246, 707
DdeI	CTNAG	2 cut(s)	165, 180
DpnI	GATC	4 cut(s)	393, 621, 699, 713
DpnII	GATC	4 cut(s)	391, 619, 697, 711
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	733
Eco147I	AGGCCT	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	4 cut(s)	19, 235, 371, 683
FaiI	YATR	6 cut(s)	17, 233, 279, 287, 369, 681
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	4 cut(s)	15, 231, 367, 679
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	177, 361, 531, 555, 723
FokI	GGATG	4 cut(s)	99, 350, 353, 485
Fsp4HI	GCNGC	5 cut(s)	177, 361, 531, 555, 723
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	5 cut(s)	177, 361, 531, 555, 723
GsuI	CTGGAG	2 cut(s)	430, 431
HaeIII	GGCC	4 cut(s)	71, 170, 214, 433
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	19, 235, 371, 683
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	2 cut(s)	143, 236
HinfI	GANTC	3 cut(s)	121, 306, 413
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	442, 652
Hpy188I	TCNGA	3 cut(s)	111, 150, 418
Hpy188III	TCNNGA	6 cut(s)	16, 118, 220, 232, 314, 680
Hpy8I	GTNNAC	2 cut(s)	442, 652
Hpy99I	CGWCG	3 cut(s)	64, 77, 80
HpyAV	CCTTC	3 cut(s)	61, 226, 665
HpyCH4V	TGCA	3 cut(s)	251, 548, 601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 248, 539, 554, 722
HpyF3I	CTNAG	2 cut(s)	165, 180
Hsp92II	CATG	4 cut(s)	19, 235, 371, 683
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	391, 619, 697, 711
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	4 cut(s)	163, 542, 566, 709
LweI	GCATC	5 cut(s)	87, 213, 372, 529, 725
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	393, 621, 699, 713
MboI	GATC	4 cut(s)	391, 619, 697, 711
MboII	GAAGA	5 cut(s)	49, 517, 620, 647, 650
MfeI	CAATTG	2 cut(s)	534, 570
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	5 cut(s)	419, 524, 534, 570, 624
MlyI	GAGTC	2 cut(s)	115, 422
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	33, 57, 237, 463, 741
MroXI	GAANNNNTTC	3 cut(s)	41, 261, 642
MseI	TTAA	2 cut(s)	140, 754
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	194, 338
MunI	CAATTG	2 cut(s)	534, 570
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	176, 248, 539, 554, 722
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	391, 619, 697, 711
NlaIII	CATG	4 cut(s)	19, 235, 371, 683
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	3 cut(s)	15, 231, 679
PceI	AGGCCT	1 cut(s)	433
PdmI	GAANNNNTTC	3 cut(s)	41, 261, 642
PfeI	GAWTC	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	178, 362, 532, 556, 724
PleI	GAGTC	2 cut(s)	115, 421
PpsI	GAGTC	2 cut(s)	115, 421
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	619
PsyI	GACNNNGTC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	2 cut(s)	247, 708
RsaNI	GTAC	2 cut(s)	246, 707
SaqAI	TTAA	2 cut(s)	140, 754
SatI	GCNGC	5 cut(s)	177, 361, 531, 555, 723
Sau3AI	GATC	4 cut(s)	391, 619, 697, 711
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	2 cut(s)	115, 422
ScrFI	CCNGG	2 cut(s)	194, 338
SfaNI	GCATC	5 cut(s)	87, 213, 372, 529, 725
SfcI	CTRYAG	2 cut(s)	489, 599
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	419, 524, 534, 570, 624
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	734
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	192, 336
StyI	CCWWGG	1 cut(s)	733
TasI	AATT	5 cut(s)	419, 524, 534, 570, 624
TatI	WGTACW	2 cut(s)	245, 706
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	140, 754
Tru9I	TTAA	2 cut(s)	140, 754
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	176, 530, 554, 722
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	4, 248, 384
Tth111I	GACNNNGTC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	2 cut(s)	200, 402
XmaJI	CCTAGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	3 cut(s)	41, 261, 642
XspI	CTAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.