Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037316.1

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Forward (+)

839 .. 1992

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggccaatttcctgataaacagaaccctaaaatcaatcccaaaccccaacctaatcaccaccgctctatcctctcgttcccgccaattcacctcctccgcggccgcggccgagcaaccccaatcagacggcggcgagtcttcgtcctcctcctccttcaccttctcatccgacggccaagacagcatacacatcaagccctcttcttccatttcaaagcgcgaaacggcgtcgtcgtcggtgacgatgccgatgtcgttcatgacggggtcggtggtggggaagaggttctacaaccaagtgacgacgaggaaggccgacgacgggaatggatggtcggtgatgcttgattatcggacgctcaagactccatcaaagagacccttaaagcttccgactttgggtttagctaaggccattgctgctgagtgggaataccaggaaatagatgggattaggcccttcacgatgcctctcatgaagcttgcttgtactgcacttgaaagagttcctatcacacggcataaggttatagaatacttgataaatagattcaatcaagatttagtcttttgtcgcgccccggatgacaatgagctgacaagcggcatccatggtatgttgcttcttctcaggtctgtgtcacctgttctgttgggtcttcatccgtgtcatattttatttacttattatatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

232

Amino Acids

25.67

Weight (kDa)

9.32

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	4 cut(s)	101, 107, 222, 579
AciI	CCGC	8 cut(s)	63, 82, 99, 101, 105, 107, 132, 606
AcoI	YGGCCR	4 cut(s)	3, 102, 108, 175
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	324, 401
AgsI	TTSAA	3 cut(s)	216, 503, 556
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	391, 410, 484, 598
AluI	AGCT	4 cut(s)	391, 410, 484, 598
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	7 cut(s)	3, 102, 108, 175, 315, 414, 458
ApeKI	GCWGC	1 cut(s)	422
Asp700I	GAANNNNTTC	2 cut(s)	287, 507
AspLEI	GCGC	2 cut(s)	222, 581
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	6 cut(s)	49, 82, 151, 253, 352, 636
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	2 cut(s)	132, 653
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	327, 379, 443
BceAI	ACGGC	4 cut(s)	145, 190, 243, 536
BciT130I	CCWGG	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	373
BisI	GCNGC	6 cut(s)	102, 105, 108, 133, 423, 607
BlsI	GCNGC	6 cut(s)	103, 106, 109, 134, 424, 608
Bme1390I	CCNGG	2 cut(s)	440, 584
BmgT120I	GGNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	440, 584
BmsI	GCATC	4 cut(s)	237, 333, 459, 618
BpiI	GAAGAC	2 cut(s)	132, 653
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	4 cut(s)	99, 105, 582, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 401
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	99, 105, 582, 613
BseGI	GGATG	5 cut(s)	167, 338, 592, 609, 664
BseLI	CCNNNNNNNGG	2 cut(s)	324, 401
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	417, 646
BseRI	GAGGAG	3 cut(s)	85, 139, 142
BseX3I	CGGCCG	2 cut(s)	102, 108
BseXI	GCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	4 cut(s)	101, 107, 222, 579
Bsh1285I	CGRYCG	2 cut(s)	105, 111
BshFI	GGCC	7 cut(s)	5, 104, 110, 177, 317, 416, 460
BsiEI	CGRYCG	2 cut(s)	105, 111
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	324, 401
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	7 cut(s)	5, 104, 110, 177, 317, 416, 460
Bso31I	GGTCTC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	8 cut(s)	63, 82, 99, 101, 105, 107, 132, 606
BspANI	GGCC	7 cut(s)	5, 104, 110, 177, 317, 416, 460
BspCNI	CTCAG	2 cut(s)	418, 645
BspFNI	CGCG	4 cut(s)	101, 107, 222, 579
BspHI	TCATGA	2 cut(s)	261, 477
BspTNI	GGTCTC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	417
BssECI	CCNNGG	4 cut(s)	99, 105, 582, 613
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	208, 278
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	411, 426, 632
BstDSI	CCRYGG	3 cut(s)	99, 105, 613
BstF5I	GGATG	5 cut(s)	167, 338, 592, 609, 664
BstFNI	CGCG	4 cut(s)	101, 107, 222, 579
BstHHI	GCGC	2 cut(s)	222, 581
BstMAI	GTCTC	1 cut(s)	373
BstMCI	CGRYCG	2 cut(s)	105, 111
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 183, 422, 494
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	438, 582
BstUI	CGCG	4 cut(s)	101, 107, 222, 579
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	2 cut(s)	132, 653
BstZI	CGGCCG	2 cut(s)	102, 108
BsuRI	GGCC	7 cut(s)	5, 104, 110, 177, 317, 416, 460
BtgI	CCRYGG	3 cut(s)	99, 105, 613
BtsCI	GGATG	5 cut(s)	167, 338, 592, 609, 664
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	2 cut(s)	261, 477
CciNI	GCGGCCGC	1 cut(s)	102
CfoI	GCGC	2 cut(s)	222, 581
Cfr13I	GGNCC	1 cut(s)	459
Cfr42I	CCGCGG	2 cut(s)	102, 108
CseI	GACGC	2 cut(s)	219, 367
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	3 cut(s)	262, 478, 614
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	3 cut(s)	411, 426, 632
EaeI	YGGCCR	4 cut(s)	3, 102, 108, 175
EagI	CGGCCG	2 cut(s)	102, 108
Eam1104I	CTCTTC	2 cut(s)	208, 278
EarI	CTCTTC	2 cut(s)	208, 278
EclXI	CGGCCG	2 cut(s)	102, 108
Eco130I	CCWWGG	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	373
Eco52I	CGGCCG	2 cut(s)	102, 108
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	3 cut(s)	265, 481, 617
FaiI	YATR	9 cut(s)	188, 263, 479, 525, 533, 615, 620, 675, 693
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	3 cut(s)	261, 477, 613
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	6 cut(s)	102, 105, 108, 133, 423, 607
FokI	GGATG	5 cut(s)	154, 345, 596, 599, 651
Fsp4HI	GCNGC	6 cut(s)	102, 105, 108, 133, 423, 607
GlaI	GCGC	2 cut(s)	221, 580
GluI	GCNGC	6 cut(s)	102, 105, 108, 133, 423, 607
HaeIII	GGCC	7 cut(s)	5, 104, 110, 177, 317, 416, 460
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	2 cut(s)	219, 367
HhaI	GCGC	2 cut(s)	222, 581
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	265, 481, 617
Hin6I	GCGC	2 cut(s)	220, 579
HinP1I	GCGC	2 cut(s)	220, 579
HindIII	AAGCTT	2 cut(s)	389, 482
HinfI	GANTC	3 cut(s)	137, 367, 552
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	6 cut(s)	49, 82, 151, 253, 352, 636
Hpy188I	TCNGA	4 cut(s)	127, 172, 357, 396
Hpy188III	TCNNGA	6 cut(s)	13, 262, 364, 466, 478, 560
Hpy99I	CGWCG	7 cut(s)	176, 235, 238, 241, 310, 323, 326
HpyAV	CCTTC	4 cut(s)	166, 172, 307, 472
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 183, 422, 494
HpyF3I	CTNAG	3 cut(s)	411, 426, 632
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	265, 481, 617
HspAI	GCGC	2 cut(s)	220, 579
KspI	CCGCGG	2 cut(s)	102, 108
LpnPI	CCDG	6 cut(s)	26, 425, 452, 597, 619, 660
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	4 cut(s)	237, 333, 459, 618
MaeIII	GTNAC	3 cut(s)	241, 301, 642
MbiI	CCGCTC	1 cut(s)	65
MboII	GAAGA	6 cut(s)	132, 195, 198, 295, 620, 653
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	7, 86
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	146, 361
MmeI	TCCRAC	2 cut(s)	195, 419
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	287, 507
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	386, 697
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	101, 107
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	440, 584
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	4 cut(s)	101, 107, 222, 579
MwoI	GCNNNNNNNGC	4 cut(s)	107, 183, 422, 494
NciI	CCSGG	1 cut(s)	584
NcoI	CCATGG	1 cut(s)	613
NlaIII	CATG	3 cut(s)	265, 481, 617
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	3 cut(s)	241, 301, 642
NotI	GCGGCCGC	1 cut(s)	102
PagI	TCATGA	2 cut(s)	261, 477
PcsI	WCGNNNNNNNCGW	2 cut(s)	233, 242
PdmI	GAANNNNTTC	2 cut(s)	287, 507
PfeI	GAWTC	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	103, 106, 109, 134, 424, 608
PleI	GAGTC	2 cut(s)	145, 361
PpsI	GAGTC	2 cut(s)	145, 361
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SacII	CCGCGG	2 cut(s)	102, 108
SaqAI	TTAA	2 cut(s)	386, 697
SatI	GCNGC	6 cut(s)	102, 105, 108, 133, 423, 607
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	146, 361
ScrFI	CCNGG	2 cut(s)	440, 584
SfaNI	GCATC	4 cut(s)	237, 333, 459, 618
Sfr303I	CCGCGG	2 cut(s)	102, 108
SgrBI	CCGCGG	2 cut(s)	102, 108
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	7, 86
SsiI	CCGC	8 cut(s)	63, 82, 99, 101, 105, 107, 132, 606
StyD4I	CCNGG	2 cut(s)	438, 582
StyI	CCWWGG	1 cut(s)	613
TasI	AATT	2 cut(s)	7, 86
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	5 cut(s)	104, 107, 110, 135, 609
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	2 cut(s)	386, 697
Tru9I	TTAA	2 cut(s)	386, 697
TseFI	GTSAC	3 cut(s)	241, 301, 642
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	3 cut(s)	241, 301, 642
TspDTI	ATGAA	3 cut(s)	250, 494, 653
TspGWI	ACGGA	1 cut(s)	657
Tth111I	GACNNNGTC	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	2 cut(s)	287, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.