Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

60838631 .. 60840924

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCAATTTCCTGATAAACAGAATCCTAAAATCAATCCCAAACCTCAACCTAATCACCACCGCCCTATCCTCTCGTTCCCGCCAATTCAGCTCCGCCGCAGCCGCCGCCGAGCATCCCCAATCTGACGGCGGCGAGTCTTCGTCCTCCTCCTCCTCCTTCACCTTCTTATCTGAAGGCCAAGACAGCATACACAACATCAAGCCCTCTTCTTCCGTTTCAAAGCGCGAAACGGCGTCGTCGTCGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCCGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGCTTCTTAGTTATGGTAAGATCATTGCTCAAATGGATTGCACTCAAAATTGGAAATTGTTTTCTCCAAGTAGAATTATAAAACGGCAAGTGGAAAAGATTGATCCATTACCTGATTGGCTGGAGTCTGAATTTGGCTTTAAGCCTGTTGTTTACTCCTGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTCCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGCAGATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTATGGTTGAAGGCGGTCATGATGTAGATATTACTGATCTCAAAGTGCAGATCGCATCAGCTGCTGTATTCCTAGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

303

Amino Acids

33.33

Weight (kDa)

6.92

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	97 - 149	1.3e-14	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	228
AciI	CCGC	8 cut(s)	63, 82, 96, 99, 105, 108, 132, 831
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	195, 680
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	330, 407
AgsI	TTSAA	5 cut(s)	222, 764, 791, 827, 900
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	6 cut(s)	93, 397, 416, 448, 644, 878
AluI	AGCT	6 cut(s)	93, 397, 416, 448, 644, 878
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	4 cut(s)	3, 178, 321, 420
ApeKI	GCWGC	5 cut(s)	101, 428, 686, 710, 878
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	2 cut(s)	293, 798
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	4 cut(s)	49, 154, 259, 358
AvrII	CCTAGG	1 cut(s)	889
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	5 cut(s)	113, 415, 698, 722, 865
BccI	CCATC	3 cut(s)	333, 385, 623
BceAI	ACGGC	3 cut(s)	145, 249, 545
BciT130I	CCWGG	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	2 cut(s)	645, 755
BisI	GCNGC	9 cut(s)	99, 102, 105, 108, 133, 429, 687, 711, 879
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	9 cut(s)	100, 103, 106, 109, 134, 430, 688, 712, 880
Bme1390I	CCNGG	1 cut(s)	705
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	5 cut(s)	124, 243, 339, 685, 881
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 407
Bse3DI	GCAATG	2 cut(s)	423, 468
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	889
BseGI	GGATG	3 cut(s)	115, 344, 634
BseLI	CCNNNNNNNGG	2 cut(s)	330, 407
BseMI	GCAATG	2 cut(s)	423, 468
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	3 cut(s)	139, 142, 145
BseXI	GCAGC	5 cut(s)	113, 415, 698, 722, 865
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	5, 180, 323, 422
BslI	CCNNNNNNNGG	2 cut(s)	330, 407
BsmAI	GTCTC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	5, 180, 323, 422
Bso31I	GGTCTC	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	465, 547, 853, 867
BspACI	CCGC	8 cut(s)	63, 82, 96, 99, 105, 108, 132, 831
BspANI	GGCC	4 cut(s)	5, 180, 323, 422
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	2 cut(s)	267, 835
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	2 cut(s)	423, 468
BssECI	CCNNGG	1 cut(s)	889
BssMI	GATC	4 cut(s)	465, 547, 853, 867
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	1 cut(s)	705
Bst6I	CTCTTC	2 cut(s)	214, 284
BstACI	GRCGYC	1 cut(s)	236
BstAPI	GCANNNNNTGC	2 cut(s)	695, 878
BstDEI	CTNAG	3 cut(s)	417, 432, 452
BstF5I	GGATG	3 cut(s)	115, 344, 634
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	468, 550, 856, 870
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	465, 547, 853, 867
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 104, 107, 186, 428, 695, 878
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	2 cut(s)	645, 755
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	113, 415, 698, 722, 865
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	5, 180, 323, 422
BtsCI	GGATG	3 cut(s)	115, 344, 634
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	2 cut(s)	267, 835
CfoI	GCGC	1 cut(s)	228
CseI	GACGC	2 cut(s)	225, 373
CviAII	CATG	2 cut(s)	268, 836
DdeI	CTNAG	3 cut(s)	417, 432, 452
DpnI	GATC	4 cut(s)	467, 549, 855, 869
DpnII	GATC	4 cut(s)	465, 547, 853, 867
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	214, 284
EarI	CTCTTC	2 cut(s)	214, 284
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	195, 680
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	2 cut(s)	271, 839
FaiI	YATR	6 cut(s)	191, 269, 459, 524, 821, 837
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	2 cut(s)	267, 835
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	9 cut(s)	99, 102, 105, 108, 133, 429, 687, 711, 879
FokI	GGATG	3 cut(s)	102, 351, 641
Fsp4HI	GCNGC	9 cut(s)	99, 102, 105, 108, 133, 429, 687, 711, 879
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	9 cut(s)	99, 102, 105, 108, 133, 429, 687, 711, 879
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	5, 180, 323, 422
HgaI	GACGC	2 cut(s)	225, 373
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	271, 839
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	24, 137, 373, 569
HphI	GGTGA	4 cut(s)	49, 154, 259, 358
Hpy166II	GTNNAC	2 cut(s)	598, 808
Hpy188I	TCNGA	5 cut(s)	127, 175, 363, 402, 574
Hpy188III	TCNNGA	4 cut(s)	13, 268, 370, 836
Hpy8I	GTNNAC	2 cut(s)	598, 808
Hpy99I	CGWCG	6 cut(s)	241, 244, 247, 316, 329, 332
HpyAV	CCTTC	5 cut(s)	169, 170, 175, 313, 821
HpyCH4V	TGCA	3 cut(s)	486, 757, 865
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 104, 107, 186, 428, 695, 878
HpyF3I	CTNAG	3 cut(s)	417, 432, 452
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	271, 839
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	465, 547, 853, 867
LmnI	GCTCC	2 cut(s)	98, 707
Lsp1109I	GCAGC	5 cut(s)	113, 415, 698, 722, 865
LweI	GCATC	5 cut(s)	124, 243, 339, 685, 881
MaeI	CTAG	1 cut(s)	890
MaeIII	GTNAC	2 cut(s)	247, 307
MalI	GATC	4 cut(s)	467, 549, 855, 869
MboI	GATC	4 cut(s)	465, 547, 853, 867
MboII	GAAGA	8 cut(s)	132, 201, 204, 301, 673, 776, 803, 806
MfeI	CAATTG	3 cut(s)	690, 726, 771
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	146, 367, 578
MmeI	TCCRAC	1 cut(s)	425
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	293, 798
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	392, 585, 910
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	878
MspR9I	CCNGG	1 cut(s)	705
MunI	CAATTG	3 cut(s)	690, 726, 771
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	7 cut(s)	90, 104, 107, 186, 428, 695, 878
NdeII	GATC	4 cut(s)	465, 547, 853, 867
NlaIII	CATG	2 cut(s)	271, 839
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	247, 307
PagI	TCATGA	2 cut(s)	267, 835
PcsI	WCGNNNNNNNCGW	2 cut(s)	239, 248
PdmI	GAANNNNTTC	2 cut(s)	293, 798
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	9 cut(s)	100, 103, 106, 109, 134, 430, 688, 712, 880
PleI	GAGTC	3 cut(s)	145, 367, 577
PpsI	GAGTC	3 cut(s)	145, 367, 577
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	759
PstNI	CAGNNNCTG	1 cut(s)	881
PsyI	GACNNNGTC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	878
SaqAI	TTAA	3 cut(s)	392, 585, 910
SatI	GCNGC	9 cut(s)	99, 102, 105, 108, 133, 429, 687, 711, 879
Sau3AI	GATC	4 cut(s)	465, 547, 853, 867
SchI	GAGTC	3 cut(s)	146, 367, 578
ScrFI	CCNGG	1 cut(s)	705
SfaNI	GCATC	5 cut(s)	124, 243, 339, 685, 881
SfcI	CTRYAG	2 cut(s)	645, 755
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	8 cut(s)	63, 82, 96, 99, 105, 108, 132, 831
SspMI	CTAG	1 cut(s)	890
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	889
TauI	GCSGC	4 cut(s)	101, 107, 110, 135
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	392, 585, 910
Tru9I	TTAA	3 cut(s)	392, 585, 910
TseFI	GTSAC	2 cut(s)	247, 307
TseI	GCWGC	5 cut(s)	101, 428, 686, 710, 878
Tsp45I	GTSAC	2 cut(s)	247, 307
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XmaJI	CCTAGG	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	2 cut(s)	293, 798
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.