Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

87716886 .. 87719285

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG663100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATCACCACCGGGTACTTGAGGGAGTGCATCCAGGAAACAGATGAGATTATGCCCTTCATGATGCCTCTCATGAAGCTTGCTTGTACTGCACTTGAAATAGTTCCTGTCACACGGCATAAGATTCAAGATTTAGTCTTTTGTCGCGCCCCGGATGACAGTGAGCTGACAAGCGGTATCCATGAACAGCAAGTGGAAAAGATTGATCCCTTACTTGATTGGATGGAGTCCGAATTTGGCTTTAGGCCTGTTGTTTACTCCAGCTTTTGTGGTGGAAAGCAGGAGAAGGGATTTCTAAAAGCTGTAGAAGCCCTACTGAAGAAAACAGATGAGTGTGAATTAGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTTTTTCGTGGGAAACTGCAGATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

152

Amino Acids

17.08

Weight (kDa)

4.66

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	17, 88
AgsI	TTSAA	4 cut(s)	98, 128, 422, 449
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	79, 166, 264, 302
AluI	AGCT	4 cut(s)	79, 166, 264, 302
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	344, 368
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	13, 152
BbvI	GCAGC	2 cut(s)	356, 380
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	13, 152
BfmI	CTRYAG	2 cut(s)	303, 413
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	345, 369
BlsI	GCNGC	2 cut(s)	346, 370
Bme1390I	CCNGG	3 cut(s)	13, 35, 152
BmrFI	CCNGG	3 cut(s)	13, 35, 152
BmsI	GCATC	3 cut(s)	39, 54, 343
BpmI	CTGGAG	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	13, 152
BsaJI	CCNNGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	30, 160, 228
BseXI	GCAGC	2 cut(s)	356, 380
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	12, 152
BsnI	GGCC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	3, 205
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	2 cut(s)	60, 72
BspMAI	CTGCAG	1 cut(s)	417
BspPI	GGATC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	3, 205
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	30, 160, 228
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	6, 208
BstMBI	GATC	2 cut(s)	3, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 308, 353, 368
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	11, 33, 150
BstSFI	CTRYAG	2 cut(s)	303, 413
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	356, 380
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	30, 160, 228
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	81
CciI	TCATGA	2 cut(s)	60, 72
CfoI	GCGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	16, 87
CviAII	CATG	3 cut(s)	61, 73, 182
CviJI	RGCY	7 cut(s)	79, 166, 240, 247, 264, 302, 311
CviKI_1	RGCY	7 cut(s)	79, 166, 240, 247, 264, 302, 311
CviQI	GTAC	2 cut(s)	16, 87
DpnI	GATC	2 cut(s)	5, 207
DpnII	GATC	2 cut(s)	3, 205
Eco147I	AGGCCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	64, 76, 185
FaiI	YATR	5 cut(s)	53, 62, 74, 120, 183
FatI	CATG	3 cut(s)	60, 72, 181
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	345, 369
FokI	GGATG	3 cut(s)	17, 167, 235
Fsp4HI	GCNGC	2 cut(s)	345, 369
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	345, 369
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	2 cut(s)	12, 152
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	64, 76, 185
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	124, 227
HpaII	CCGG	2 cut(s)	12, 152
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	61, 73, 128
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	67, 280
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	30, 92, 362, 415
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 308, 353, 368
Hsp92II	CATG	3 cut(s)	64, 76, 185
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 205
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	9 cut(s)	20, 25, 47, 120, 165, 261, 266, 274, 348
Lsp1109I	GCAGC	2 cut(s)	356, 380
LweI	GCATC	3 cut(s)	39, 54, 343
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	5, 207
MboI	GATC	2 cut(s)	3, 205
MboII	GAAGA	2 cut(s)	331, 434
MfeI	CAATTG	3 cut(s)	348, 384, 429
MluCI	AATT	5 cut(s)	233, 338, 348, 384, 429
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	15, 78
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	2 cut(s)	12, 152
MspR9I	CCNGG	3 cut(s)	13, 35, 152
MunI	CAATTG	3 cut(s)	348, 384, 429
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	89, 308, 353, 368
NciI	CCSGG	2 cut(s)	13, 152
NdeII	GATC	2 cut(s)	3, 205
NlaIII	CATG	3 cut(s)	64, 76, 185
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	2 cut(s)	60, 72
PceI	AGGCCT	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	346, 370
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	417
RsaI	GTAC	2 cut(s)	17, 88
RsaNI	GTAC	2 cut(s)	16, 87
SatI	GCNGC	2 cut(s)	345, 369
Sau3AI	GATC	2 cut(s)	3, 205
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	13, 35, 152
SetI	ASST	4 cut(s)	81, 168, 266, 304
SfaNI	GCATC	3 cut(s)	39, 54, 343
SfcI	CTRYAG	2 cut(s)	303, 413
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	5 cut(s)	233, 338, 348, 384, 429
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	11, 33, 150
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	5 cut(s)	233, 338, 348, 384, 429
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	344, 368
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	49, 89, 198
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.