Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1640493 .. 1642883

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCAATTTCCTGATGGACAGAATCCTAAAATCAATCCCAAACCTCAACCTAATCACCACCGCCCTATCCTCTGGCTCCGCCGCAGCCGCCGCCGAGCAACCCCAATCTGACGGTGGCGAGTCTTCGTCCTCCTCCTCCTTCACCTTCTCATCCGAAGGCCAAGACAGCATACCCAACATCAAGCCCTCTTCTGCCGTTTCAAAGCGCGAAACGGCGTCGTCGTGGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTTAAAGCTTCTGACTTTGGGTTTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGGCCCTTCACGATGCCTTTCATGAAGCTTGCTCAGTTGCTTGTACTGCACTGGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATAAATAGATTCAATCAAGATTTAGTCTTTTGTCACGCGCCAGATGACAATGAGCTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACCTGATTTGCTGGAGTCCGAATTTGGCTTTAAGCCTGTTGTTTACTCCTGCTTTTTTGGTGGAAAGCATGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAATGTGAATTGGCAGCAATTGATGCTATTGCAGGAGCAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGCAGATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGGAGACAAGTGGGGTATGGTTGAAGGCGGTCATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATCAGCTGCTGTATTCCTAGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

326

Amino Acids

35.63

Weight (kDa)

5.27

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	91 - 210	3.8e-21	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	210, 560
AciI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 585, 900
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	472, 933
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	6 cut(s)	204, 535, 833, 860, 896, 969
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	379, 398, 455, 577, 713, 947
AluI	AGCT	6 cut(s)	379, 398, 455, 577, 713, 947
Alw26I	GTCTC	2 cut(s)	361, 870
AlwI	GGATC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	5 cut(s)	3, 160, 303, 402, 429
ApeKI	GCWGC	5 cut(s)	86, 410, 755, 779, 947
ApoI	RAATTY	1 cut(s)	644
Asp700I	GAANNNNTTC	3 cut(s)	275, 486, 867
AspA2I	CCTAGG	1 cut(s)	958
AspLEI	GCGC	2 cut(s)	210, 562
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	4 cut(s)	49, 136, 241, 340
AvrII	CCTAGG	1 cut(s)	958
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	5 cut(s)	98, 397, 767, 791, 934
BccI	CCATC	4 cut(s)	10, 315, 367, 692
BceAI	ACGGC	4 cut(s)	182, 231, 515, 614
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	361, 870
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	2 cut(s)	714, 824
BisI	GCNGC	9 cut(s)	84, 87, 90, 93, 411, 586, 756, 780, 948
BlnI	CCTAGG	1 cut(s)	958
BlsI	GCNGC	9 cut(s)	85, 88, 91, 94, 412, 587, 757, 781, 949
Bme1390I	CCNGG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	6 cut(s)	225, 321, 430, 597, 754, 950
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	958
BseGI	GGATG	4 cut(s)	152, 326, 588, 703
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	405, 474
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	124, 127
BseXI	GCAGC	5 cut(s)	98, 397, 767, 791, 934
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	2 cut(s)	210, 560
BshFI	GGCC	5 cut(s)	5, 162, 305, 404, 431
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	361, 870
BsnI	GGCC	5 cut(s)	5, 162, 305, 404, 431
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	616, 922, 936
BspACI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 585, 900
BspANI	GGCC	5 cut(s)	5, 162, 305, 404, 431
BspCNI	CTCAG	2 cut(s)	406, 473
BspFNI	CGCG	2 cut(s)	210, 560
BspHI	TCATGA	3 cut(s)	249, 448, 904
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	828
BspPI	GGATC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	958
BssMI	GATC	3 cut(s)	616, 922, 936
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	2 cut(s)	196, 266
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	2 cut(s)	764, 947
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	3 cut(s)	399, 414, 460
BstF5I	GGATG	4 cut(s)	152, 326, 588, 703
BstFNI	CGCG	2 cut(s)	210, 560
BstHHI	GCGC	2 cut(s)	210, 562
BstKTI	GATC	3 cut(s)	619, 925, 939
BstMAI	GTCTC	2 cut(s)	361, 870
BstMBI	GATC	3 cut(s)	616, 922, 936
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 410, 473, 764, 779, 947
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	714, 824
BstUI	CGCG	2 cut(s)	210, 560
BstV1I	GCAGC	5 cut(s)	98, 397, 767, 791, 934
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	5 cut(s)	5, 162, 305, 404, 431
BtsCI	GGATG	4 cut(s)	152, 326, 588, 703
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	950
CciI	TCATGA	3 cut(s)	249, 448, 904
CfoI	GCGC	2 cut(s)	210, 562
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	2 cut(s)	207, 355
Csp6I	GTAC	2 cut(s)	471, 932
CviAII	CATG	5 cut(s)	250, 449, 593, 692, 905
CviQI	GTAC	2 cut(s)	471, 932
DdeI	CTNAG	3 cut(s)	399, 414, 460
DpnI	GATC	3 cut(s)	618, 924, 938
DpnII	GATC	3 cut(s)	616, 922, 936
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	196, 266
EarI	CTCTTC	2 cut(s)	196, 266
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	958
FaeI	CATG	5 cut(s)	253, 452, 596, 695, 908
FaiI	YATR	9 cut(s)	173, 251, 450, 504, 512, 594, 693, 890, 906
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	5 cut(s)	249, 448, 592, 691, 904
Fnu4HI	GCNGC	9 cut(s)	84, 87, 90, 93, 411, 586, 756, 780, 948
FokI	GGATG	4 cut(s)	139, 333, 575, 710
Fsp4HI	GCNGC	9 cut(s)	84, 87, 90, 93, 411, 586, 756, 780, 948
FspBI	CTAG	1 cut(s)	959
GlaI	GCGC	2 cut(s)	209, 561
GluI	GCNGC	9 cut(s)	84, 87, 90, 93, 411, 586, 756, 780, 948
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	5 cut(s)	5, 162, 305, 404, 431
HgaI	GACGC	2 cut(s)	207, 355
HhaI	GCGC	2 cut(s)	210, 562
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	253, 452, 596, 695, 908
Hin6I	GCGC	2 cut(s)	208, 560
HinP1I	GCGC	2 cut(s)	208, 560
HindIII	AAGCTT	2 cut(s)	377, 453
HinfI	GANTC	5 cut(s)	24, 122, 355, 531, 638
HphI	GGTGA	4 cut(s)	49, 136, 241, 340
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	5 cut(s)	112, 157, 345, 384, 643
Hpy188III	TCNNGA	7 cut(s)	13, 250, 352, 437, 449, 539, 905
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	5 cut(s)	223, 226, 298, 311, 314
HpyAV	CCTTC	6 cut(s)	151, 152, 157, 295, 443, 890
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	476, 773, 826
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 410, 473, 764, 779, 947
HpyF3I	CTNAG	3 cut(s)	399, 414, 460
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	253, 452, 596, 695, 908
HspAI	GCGC	2 cut(s)	208, 560
Kzo9I	GATC	3 cut(s)	616, 922, 936
LmnI	GCTCC	2 cut(s)	83, 776
Lsp1109I	GCAGC	5 cut(s)	98, 397, 767, 791, 934
LweI	GCATC	6 cut(s)	225, 321, 430, 597, 754, 950
MaeI	CTAG	1 cut(s)	959
MaeIII	GTNAC	3 cut(s)	229, 289, 554
MalI	GATC	3 cut(s)	618, 924, 938
MboI	GATC	3 cut(s)	616, 922, 936
MboII	GAAGA	7 cut(s)	117, 183, 283, 742, 845, 872, 875
MfeI	CAATTG	3 cut(s)	759, 795, 840
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	7, 644, 749, 759, 795, 840
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	131, 349, 647
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	275, 486, 867
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	374, 654, 979
MslI	CAYNNNNRTG	1 cut(s)	696
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	947
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	3 cut(s)	759, 795, 840
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	2 cut(s)	210, 560
MwoI	GCNNNNNNNGC	8 cut(s)	89, 92, 168, 410, 473, 764, 779, 947
NdeII	GATC	3 cut(s)	616, 922, 936
NlaIII	CATG	5 cut(s)	253, 452, 596, 695, 908
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	229, 289, 554
PagI	TCATGA	3 cut(s)	249, 448, 904
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 230
PdmI	GAANNNNTTC	3 cut(s)	275, 486, 867
PfeI	GAWTC	2 cut(s)	24, 531
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	9 cut(s)	85, 88, 91, 94, 412, 587, 757, 781, 949
PleI	GAGTC	3 cut(s)	130, 349, 646
PpsI	GAGTC	3 cut(s)	130, 349, 646
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	828
PstNI	CAGNNNCTG	1 cut(s)	950
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	2 cut(s)	472, 933
RsaNI	GTAC	2 cut(s)	471, 932
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	3 cut(s)	374, 654, 979
SatI	GCNGC	9 cut(s)	84, 87, 90, 93, 411, 586, 756, 780, 948
Sau3AI	GATC	3 cut(s)	616, 922, 936
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	3 cut(s)	131, 349, 647
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	6 cut(s)	225, 321, 430, 597, 754, 950
SfcI	CTRYAG	2 cut(s)	714, 824
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	6 cut(s)	7, 644, 749, 759, 795, 840
SsiI	CCGC	7 cut(s)	63, 81, 84, 90, 93, 585, 900
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	1 cut(s)	116
TasI	AATT	6 cut(s)	7, 644, 749, 759, 795, 840
TatI	WGTACW	2 cut(s)	470, 931
TauI	GCSGC	4 cut(s)	86, 92, 95, 588
TfiI	GAWTC	2 cut(s)	24, 531
Tru1I	TTAA	3 cut(s)	374, 654, 979
Tru9I	TTAA	3 cut(s)	374, 654, 979
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	3 cut(s)	229, 289, 554
TseI	GCWGC	5 cut(s)	86, 410, 755, 779, 947
Tsp45I	GTSAC	3 cut(s)	229, 289, 554
TspDTI	ATGAA	5 cut(s)	238, 437, 465, 609, 756
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	13, 113
XmaJI	CCTAGG	1 cut(s)	958
XmnI	GAANNNNTTC	3 cut(s)	275, 486, 867
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.