Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005675

Physical Location & Seq

Genomic Coordinates Reverse (-)

26409999 .. 26412839

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G298100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCAATTTACTGATCAACAGAACCTTAAAATCAATCGGAAATTCCAAACTAATCACAGCGCTTTCTTCTCGATCTCGCCACTTCAGTTCCATCGCCGCCATCGAGCAGCCCCAATCCGACGGTCCATCGTCGTCCTTCAGCTTCTCGTCCGATGGCCAAGAAAACCAGAACAATAGAAACAATCAAGATGACAGCATACACATTAAGCCGTCGAGTTCGAGTTCCAAGCACGAAACGGCGTCGTCGTCGGTGACGATGCCAATGTCGTTCATGACGGGGTCAATTGTGGGAAAGAGGTTTTACAACCAAGTGACGACGAGGAAGGCTGATGATGGGAATGGATGGACTGTAATGCTTGATTATCGGACACTCAAAACGCCTTCCAAAAGGCCCCTCAAGCTTCCTACTTTAGCTCTAGCTAAGGCCATTGCTGCTGAGTGGGAATACCAGCAAACAGATGGGATTAGGCCCTTCACGATGCCTCTCATGAGACTGGCTTGTACTGCACTGGAAAGAGTTCCTCTCACACGGCCAAAAGTTATAGATTATTTGATGCAGAAATTTAATCAAGATTTAGTCTTCTGTCGCGCACCAGACGACAATGATCTCACAAGCGTCGTCCATGAACGGCAAGTGGAGAAAATTGATCCTTTACTTGATTGGGTGAAGTCAGAATTTGGCTTCAAGCCTGTTGTGTACTCCAGCTTTTTTGGTGGGAAGCAGGGGGATGGTCTTACAAAGGCTATAGAAACCGTGCTAAAGCAAACAGATGACTGTGAATTAGCAGCAATTGATGCCATTGCATCATCAGCACACTCTCTGATAATTGCTATTGGAATTCATCGGGGGAAGTTACAGATTGAAGAAGCAATTGAGTTGATTAGGCTTGAAGAAGATTTACAGGTGGACAGGTGGGGTTTGGTTGAAGGCGGTCATGATGTAGATTTAGCTGATCTCAAGGTACAGATCGCATCAGCTGCTGTATTCCTAGGTCTTTCAAGAAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

338

Amino Acids

37.31

Weight (kDa)

6.4

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40660
fragaria_vesca	FvH4_6g52290 FvH4_6g52310
malus_domestica	MD09G1019000.v1.1 MD17G1019600.v1.1
prunus_persica	Prupe.3G298100_v2.0.a1
pyrus_communis	pycom111g01580 pycom17g01620
rosa_chinensis	RchiOBHm_Chr2g0173821 RchiOBHm_Chr2g0174241
rosa_laevigata	RLG00000022226 RLG00000022231
rosa_multiflora	Rmu_sc0003188.1_g000011 Rmu_sc0037316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078300 Rroxscaffold_2G00078590 Rroxscaffold_4G00327960
rosa_rugosa	Rorug02G0573100 Rorug02G0573500
rosa_samantha	Rh2AG652100 Rh2AG652300 Rh2AG656100 Rh2BG662900 Rh2BG663100 Rh2BG667300 Rh2CG627500 Rh2DG678000
rosa_wichuraiana	Rw2G053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	591
AciI	CCGC	2 cut(s)	99, 933
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	3 cut(s)	3, 157, 533
AcsI	RAATTY	4 cut(s)	43, 563, 677, 840
AcuI	CTGAAG	2 cut(s)	70, 124
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	505, 701, 966
AfeI	AGCGCT	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	688, 866, 893, 929, 1002
AluBI	AGCT	7 cut(s)	144, 403, 416, 422, 708, 953, 980
AluI	AGCT	7 cut(s)	144, 403, 416, 422, 708, 953, 980
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	644
AlwNI	CAGNNNCTG	1 cut(s)	983
Aor51HI	AGCGCT	1 cut(s)	63
AoxI	GGCC	6 cut(s)	3, 157, 392, 426, 470, 533
ApeKI	GCWGC	4 cut(s)	109, 434, 788, 980
ApoI	RAATTY	4 cut(s)	43, 563, 677, 840
Asp700I	GAANNNNTTC	1 cut(s)	519
AspA2I	CCTAGG	1 cut(s)	991
AspLEI	GCGC	2 cut(s)	64, 593
AspS9I	GGNCC	3 cut(s)	125, 393, 471
AsuHPI	GGTGA	2 cut(s)	265, 679
AvaII	GGWCC	1 cut(s)	125
AvrII	CCTAGG	1 cut(s)	991
BalI	TGGCCA	2 cut(s)	5, 159
BarI	GAAGNNNNNNTAC	2 cut(s)	885, 917
BbsI	GAAGAC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	121, 421, 800, 967
BccI	CCATC	8 cut(s)	101, 110, 136, 149, 329, 339, 455, 725
BceAI	ACGGC	4 cut(s)	196, 255, 548, 647
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	419, 992
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	5 cut(s)	99, 110, 435, 789, 981
BlnI	CCTAGG	1 cut(s)	991
BlsI	GCNGC	5 cut(s)	100, 111, 436, 790, 982
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	125, 393, 471
BmiI	GGNNCC	1 cut(s)	395
BmsI	GCATC	6 cut(s)	249, 471, 546, 787, 815, 983
BpiI	GAAGAC	1 cut(s)	574
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
BpmI	CTGGAG	1 cut(s)	688
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	383, 944
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	991
Bse1I	ACTGG	2 cut(s)	501, 516
Bse3DI	GCAATG	2 cut(s)	429, 801
BseDI	CCNNGG	1 cut(s)	991
BseGI	GGATG	2 cut(s)	350, 736
BseMI	GCAATG	2 cut(s)	429, 801
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	501, 516
BseXI	GCAGC	4 cut(s)	121, 421, 800, 967
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	6 cut(s)	5, 159, 394, 428, 472, 535
BsmAI	GTCTC	1 cut(s)	487
BsnI	GGCC	6 cut(s)	5, 159, 394, 428, 472, 535
Bsp143I	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
BspACI	CCGC	2 cut(s)	99, 933
BspANI	GGCC	6 cut(s)	5, 159, 394, 428, 472, 535
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	3 cut(s)	273, 489, 937
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	2 cut(s)	429, 801
BsrI	ACTGG	2 cut(s)	501, 516
BssECI	CCNNGG	1 cut(s)	991
BssMI	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	991
Bst4CI	ACNGT	4 cut(s)	125, 352, 757, 779
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	2 cut(s)	797, 980
BstDEI	CTNAG	2 cut(s)	423, 438
BstF5I	GGATG	2 cut(s)	350, 736
BstFNI	CGCG	1 cut(s)	591
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	64, 593
BstKTI	GATC	6 cut(s)	18, 77, 610, 652, 958, 972
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
BstMWI	GCNNNNNNNGC	6 cut(s)	400, 434, 506, 797, 812, 980
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	4 cut(s)	121, 421, 800, 967
BstV2I	GAAGAC	1 cut(s)	574
BsuRI	GGCC	6 cut(s)	5, 159, 394, 428, 472, 535
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	350, 736
BtsIMutI	CAGTG	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	983
CciI	TCATGA	3 cut(s)	273, 489, 937
CfoI	GCGC	2 cut(s)	64, 593
Cfr13I	GGNCC	3 cut(s)	125, 393, 471
CseI	GACGC	2 cut(s)	231, 607
Csp6I	GTAC	3 cut(s)	504, 700, 965
CviAII	CATG	4 cut(s)	274, 490, 626, 938
CviQI	GTAC	3 cut(s)	504, 700, 965
DdeI	CTNAG	2 cut(s)	423, 438
DpnI	GATC	6 cut(s)	17, 76, 609, 651, 957, 971
DpnII	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
EaeI	YGGCCR	3 cut(s)	3, 157, 533
Eco130I	CCWWGG	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	70, 124
EcoO109I	RGGNCCY	2 cut(s)	393, 471
EcoRI	GAATTC	1 cut(s)	840
EcoT14I	CCWWGG	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	4 cut(s)	277, 493, 629, 941
FaiI	YATR	7 cut(s)	200, 275, 491, 545, 627, 749, 939
FatI	CATG	4 cut(s)	273, 489, 625, 937
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	5 cut(s)	99, 110, 435, 789, 981
FokI	GGATG	2 cut(s)	357, 743
Fsp4HI	GCNGC	5 cut(s)	99, 110, 435, 789, 981
FspBI	CTAG	2 cut(s)	419, 992
GlaI	GCGC	2 cut(s)	63, 592
GluI	GCNGC	5 cut(s)	99, 110, 435, 789, 981
GsuI	CTGGAG	1 cut(s)	688
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	6 cut(s)	5, 159, 394, 428, 472, 535
HgaI	GACGC	2 cut(s)	231, 607
HhaI	GCGC	2 cut(s)	64, 593
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	277, 493, 629, 941
Hin6I	GCGC	2 cut(s)	62, 591
HinP1I	GCGC	2 cut(s)	62, 591
HindIII	AAGCTT	1 cut(s)	401
HphI	GGTGA	2 cut(s)	265, 679
Hpy166II	GTNNAC	2 cut(s)	700, 910
Hpy188I	TCNGA	6 cut(s)	41, 121, 154, 369, 676, 825
Hpy188III	TCNNGA	8 cut(s)	72, 188, 274, 478, 490, 572, 938, 1002
Hpy8I	GTNNAC	2 cut(s)	700, 910
Hpy99I	CGWCG	8 cut(s)	125, 136, 217, 247, 250, 253, 322, 623
HpyAV	CCTTC	6 cut(s)	148, 319, 393, 484, 923, 999
HpyCH4III	ACNGT	4 cut(s)	125, 352, 757, 779
HpyCH4V	TGCA	3 cut(s)	509, 559, 806
HpyF10VI	GCNNNNNNNGC	6 cut(s)	400, 434, 506, 797, 812, 980
HpyF3I	CTNAG	2 cut(s)	423, 438
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	277, 493, 629, 941
HspAI	GCGC	2 cut(s)	62, 591
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
Lsp1109I	GCAGC	4 cut(s)	121, 421, 800, 967
LweI	GCATC	6 cut(s)	249, 471, 546, 787, 815, 983
MaeI	CTAG	2 cut(s)	419, 992
MaeIII	GTNAC	3 cut(s)	253, 313, 855
MalI	GATC	6 cut(s)	17, 76, 609, 651, 957, 971
MboI	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
MboII	GAAGA	5 cut(s)	60, 574, 878, 905, 908
MfeI	CAATTG	3 cut(s)	285, 792, 873
MlsI	TGGCCA	2 cut(s)	5, 159
MluNI	TGGCCA	2 cut(s)	5, 159
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	291, 315, 407, 495, 534
Mox20I	TGGCCA	2 cut(s)	5, 159
MroXI	GAANNNNTTC	1 cut(s)	519
MscI	TGGCCA	2 cut(s)	5, 159
MseI	TTAA	4 cut(s)	29, 207, 567, 1012
Msp20I	TGGCCA	2 cut(s)	5, 159
MspA1I	CMGCKG	1 cut(s)	980
MunI	CAATTG	3 cut(s)	285, 792, 873
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	6 cut(s)	400, 434, 506, 797, 812, 980
NdeII	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
NlaIII	CATG	4 cut(s)	277, 493, 629, 941
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	2 cut(s)	253, 313
PagI	TCATGA	3 cut(s)	273, 489, 937
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 245, 254
PdmI	GAANNNNTTC	1 cut(s)	519
PflFI	GACNNNGTC	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	100, 111, 436, 790, 982
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	3 cut(s)	125, 393, 471
PstNI	CAGNNNCTG	1 cut(s)	983
PsyI	GACNNNGTC	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	505, 701, 966
RsaNI	GTAC	3 cut(s)	504, 700, 965
SaqAI	TTAA	4 cut(s)	29, 207, 567, 1012
SatI	GCNGC	5 cut(s)	99, 110, 435, 789, 981
Sau3AI	GATC	6 cut(s)	15, 74, 607, 649, 955, 969
Sau96I	GGNCC	3 cut(s)	125, 393, 471
SfaNI	GCATC	6 cut(s)	249, 471, 546, 787, 815, 983
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	398, 959
SmoI	CTYRAG	2 cut(s)	398, 959
SsiI	CCGC	2 cut(s)	99, 933
SspMI	CTAG	2 cut(s)	419, 992
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	125, 352, 757, 779
TaqI	TCGA	4 cut(s)	73, 105, 215, 221
TatI	WGTACW	2 cut(s)	503, 699
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	4 cut(s)	29, 207, 567, 1012
Tru9I	TTAA	4 cut(s)	29, 207, 567, 1012
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	253, 313
TseI	GCWGC	4 cut(s)	109, 434, 788, 980
Tsp45I	GTSAC	2 cut(s)	253, 313
TspDTI	ATGAA	3 cut(s)	262, 642, 833
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	4 cut(s)	43, 563, 677, 840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmaJI	CCTAGG	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	419, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.