Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Forward (+)

16431304 .. 16433305

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGTTGCTGAGAACAATAAAAACAAGGACGTAACACTCTCTGCATCAATGGACAACAACAACAACAACATCAAAGGAACTAACATTCATCTTGAGGTTCATCAAAAGGAACCAGCTTTGGTCAAACCTGAATCCGAGACACGAAAGGGCCTTTACTTCTTGTCGAATCTTGACCAGAACATCGCCGTGATTGTTCGTACAATCTACTGTTTCAAATCCGAGGAGAGAGGGAACGAGGAAGCAGTCCAAGTGATCAAGAAAGCTCTGAGTCAAGTTCTTGTTCATTACTATCCTCTCGCTGGACGCCTCACCATCAGTCCTGAAGGTAAACTCACAGTTGACTGTACCGAAGAAGGAGTTGTGTTTGTGGAAGCAGAAGCAAACTGTAAAATGGATGAGATTGGTGACATTACCAAACCCGATCCTGAAACTCTAGGGAAGCTTGTGTACGATGTCGTAGACGCCAAGAACATTCTTGAGATCCCTCCTGTTACCGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGTTCTCGGACTCTGTATGAATCACTGTATGTTCGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGTCAAGTCGCTAGAGGCTTACCATTAACAACTCCCCCATTCTCAGACAGAACCATTCTCAATGCTCGAAACCCTCCAAAGATCGAGAATCTCCACCAAGAATTTGAAGAGATCGAAGATAAATCCAACATCAACTCTCTTTACACCAAAGAGCCAACTCTCTACAGATCCTTCTGCTTTGATCCAGAGAAAATCAAGAAACTTAAGCTCCAAGCAACAGAGAACAGTGAGTCTCTCCTCGGTAACTCATGCACAAGTTTTGAGGCTTTATCTGCTTTTGTCTGGAGAGCAAGAACCAAGTCGTTGAAGATGTTGAGTGATCAGAAAACGAAGCTTCTCTTCGCCGTTGATGGTAGAGCCAAGTTCGAGCCTCAACTGCCAAAAGGGTACTTCGGAAATGGAATTGTTCTCACAAACTCCATCTGTGAAGCTGGGGAGCTTATCGAAAAACCGTTGAGTTTCGCGGTGGGATTAGTCAGAGAAGCCATTAAGATGGTAACTGATGGGTACATGAGATCTGCTATTGATTACTTCGAAGTCACGAGAGCAAGACCTTCTCTTTCCTCGACTCTTCTGATCACTACATGGTCAAGATTGGGTTTCCACACGACAGATTTCGGTTGGGGAGAACCGATTTTATCCGGTCCAGTAGCTTTGCCTGAGAAAGAAGTAACTCTGTTTTTGTCTCATGGAGAACAGAGGAGAAGCATCAATGTGCTTCTTGGACTTCCCGCTACAGCCATGGATGTGTTTCAAGAACAGTTTTTACAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

457

Amino Acids

50.96

Weight (kDa)

5.6

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	33 - 454	1.8e-100	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	1061
AciI	CCGC	3 cut(s)	495, 1061, 1329
AclWI	GGATC	4 cut(s)	416, 475, 759, 773
AcsI	RAATTY	2 cut(s)	509, 698
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	304, 462
AfaI	GTAC	5 cut(s)	199, 346, 449, 986, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	5 cut(s)	214, 514, 704, 904, 1352
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	9 cut(s)	116, 263, 442, 575, 805, 931, 1028, 1036, 1250
AluI	AGCT	9 cut(s)	116, 263, 442, 575, 805, 931, 1028, 1036, 1250
Alw26I	GTCTC	3 cut(s)	131, 834, 1287
AlwI	GGATC	4 cut(s)	416, 475, 759, 773
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	509, 698
AspS9I	GGNCC	2 cut(s)	148, 1241
AsuHPI	GGTGA	3 cut(s)	301, 416, 514
AsuII	TTCGAA	1 cut(s)	1131
AvaII	GGWCC	1 cut(s)	1241
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BauI	CACGAG	1 cut(s)	1138
BccI	CCATC	6 cut(s)	320, 557, 941, 1025, 1084, 1094
BceAI	ACGGC	2 cut(s)	170, 926
BclI	TGATCA	3 cut(s)	252, 916, 1173
BcoDI	GTCTC	3 cut(s)	131, 834, 1287
BfaI	CTAG	2 cut(s)	434, 609
BfmI	CTRYAG	2 cut(s)	760, 1332
BfrI	CTTAAG	1 cut(s)	800
BglII	AGATCT	1 cut(s)	1112
Bme18I	GGWCC	1 cut(s)	1241
BmgT120I	GGNCC	2 cut(s)	148, 1241
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	53, 1314
BpmI	CTGGAG	1 cut(s)	901
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	1131
BpuEI	CTTGAG	2 cut(s)	113, 497
BsaHI	GRCGYC	2 cut(s)	304, 462
BsaJI	CCNNGG	3 cut(s)	219, 835, 1338
BsaWI	WCCGGW	1 cut(s)	1238
BsaXI	ACNNNNNCTCC	4 cut(s)	513, 543, 789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	1244
BseDI	CCNNGG	3 cut(s)	219, 835, 1338
BseGI	GGATG	2 cut(s)	400, 1348
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	4 cut(s)	257, 512, 654, 1248
BseNI	ACTGG	1 cut(s)	1244
BseRI	GAGGAG	3 cut(s)	236, 824, 1312
BseYI	CCCAGC	1 cut(s)	1028
Bsh1236I	CGCG	1 cut(s)	1061
BshFI	GGCC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	1239
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	131, 834, 1287
BsnI	GGCC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	1131
Bsp19I	CCATGG	1 cut(s)	1338
BspACI	CCGC	3 cut(s)	495, 1061, 1329
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	4 cut(s)	258, 511, 653, 1249
BspFNI	CGCG	1 cut(s)	1061
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	4 cut(s)	416, 475, 759, 773
BspT104I	TTCGAA	1 cut(s)	1131
BspTI	CTTAAG	1 cut(s)	800
BsrBI	CCGCTC	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	1244
BssECI	CCNNGG	3 cut(s)	219, 835, 1338
BssNI	GRCGYC	2 cut(s)	304, 462
BssSI	CACGAG	1 cut(s)	1138
BssT1I	CCWWGG	1 cut(s)	1338
Bst2BI	CACGAG	1 cut(s)	1138
Bst4CI	ACNGT	8 cut(s)	209, 337, 344, 386, 554, 824, 1050, 1359
Bst6I	CTCTTC	3 cut(s)	699, 941, 1173
BstACI	GRCGYC	2 cut(s)	304, 462
BstAFI	CTTAAG	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	1131
BstDEI	CTNAG	5 cut(s)	9, 266, 498, 640, 1257
BstDSI	CCRYGG	1 cut(s)	1338
BstF5I	GGATG	2 cut(s)	400, 1348
BstFNI	CGCG	1 cut(s)	1061
BstMAI	GTCTC	3 cut(s)	131, 834, 1287
BstMWI	GCNNNNNNNGC	2 cut(s)	869, 973
BstSFI	CTRYAG	2 cut(s)	760, 1332
BstUI	CGCG	1 cut(s)	1061
BstX2I	RGATCY	3 cut(s)	480, 764, 1112
BstXI	CCANNNNNNTGG	1 cut(s)	1090
BstYI	RGATCY	3 cut(s)	480, 764, 1112
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	1338
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	400, 1348
BtsIMutI	CAGTG	2 cut(s)	550, 829
Cfr13I	GGNCC	2 cut(s)	148, 1241
CseI	GACGC	2 cut(s)	312, 470
Csp6I	GTAC	5 cut(s)	198, 345, 448, 985, 1105
CviAII	CATG	6 cut(s)	594, 846, 1108, 1182, 1286, 1339
CviQI	GTAC	5 cut(s)	198, 345, 448, 985, 1105
DdeI	CTNAG	5 cut(s)	9, 266, 498, 640, 1257
Eam1104I	CTCTTC	3 cut(s)	699, 941, 1173
EarI	CTCTTC	3 cut(s)	699, 941, 1173
Eco130I	CCWWGG	1 cut(s)	1338
Eco47I	GGWCC	1 cut(s)	1241
Eco57I	CTGAAG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	1338
ErhI	CCWWGG	1 cut(s)	1338
FaeI	CATG	6 cut(s)	597, 849, 1111, 1185, 1289, 1342
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FatI	CATG	6 cut(s)	593, 845, 1107, 1181, 1285, 1338
FauI	CCCGC	1 cut(s)	1336
FbaI	TGATCA	3 cut(s)	252, 916, 1173
FblI	GTMKAC	1 cut(s)	459
FokI	GGATG	2 cut(s)	407, 1355
FspBI	CTAG	2 cut(s)	434, 609
GsaI	CCCAGC	1 cut(s)	1032
GsuI	CTGGAG	1 cut(s)	901
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	1239
HgaI	GACGC	2 cut(s)	312, 470
Hin1I	GRCGYC	2 cut(s)	304, 462
Hin1II	CATG	6 cut(s)	597, 849, 1111, 1185, 1289, 1342
HincII	GTYRAC	2 cut(s)	340, 589
HindII	GTYRAC	2 cut(s)	340, 589
HindIII	AAGCTT	2 cut(s)	440, 929
HinfI	GANTC	8 cut(s)	131, 166, 268, 537, 547, 685, 827, 1165
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	1 cut(s)	1239
HphI	GGTGA	3 cut(s)	301, 416, 514
Hpy166II	GTNNAC	5 cut(s)	329, 340, 448, 460, 589
Hpy188I	TCNGA	9 cut(s)	136, 220, 267, 536, 643, 921, 992, 1076, 1173
Hpy8I	GTNNAC	5 cut(s)	329, 340, 448, 460, 589
HpyAV	CCTTC	4 cut(s)	317, 347, 778, 1161
HpyCH4III	ACNGT	8 cut(s)	209, 337, 344, 386, 554, 824, 1050, 1359
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	44, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	869, 973
HpyF3I	CTNAG	5 cut(s)	9, 266, 498, 640, 1257
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	2 cut(s)	304, 462
Hsp92II	CATG	6 cut(s)	597, 849, 1111, 1185, 1289, 1342
Ksp22I	TGATCA	3 cut(s)	252, 916, 1173
KspAI	GTTAAC	1 cut(s)	589
LmnI	GCTCC	3 cut(s)	572, 810, 1033
LweI	GCATC	2 cut(s)	53, 1314
MaeI	CTAG	2 cut(s)	434, 609
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	8 cut(s)	31, 404, 490, 502, 839, 1093, 1135, 1267
MbiI	CCGCTC	1 cut(s)	497
MboII	GAAGA	6 cut(s)	362, 716, 725, 916, 928, 1160
MflI	RGATCY	3 cut(s)	480, 764, 1112
MluCI	AATT	4 cut(s)	509, 567, 698, 999
MlyI	GAGTC	4 cut(s)	277, 531, 836, 1159
MmeI	TCCRAC	1 cut(s)	747
MseI	TTAA	4 cut(s)	588, 623, 801, 1086
MslI	CAYNNNNRTG	4 cut(s)	185, 1088, 1310, 1343
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	1 cut(s)	1239
MvnI	CGCG	1 cut(s)	1061
MwoI	GCNNNNNNNGC	2 cut(s)	869, 973
NcoI	CCATGG	1 cut(s)	1338
NlaIII	CATG	6 cut(s)	597, 849, 1111, 1185, 1289, 1342
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	3 cut(s)	404, 502, 1135
NspV	TTCGAA	1 cut(s)	1131
PfeI	GAWTC	4 cut(s)	131, 166, 547, 685
PleI	GAGTC	4 cut(s)	276, 531, 835, 1159
PpsI	GAGTC	4 cut(s)	276, 531, 835, 1159
PspFI	CCCAGC	1 cut(s)	1028
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	148, 1241
PsrI	GAACNNNNNNTAC	1 cut(s)	1347
PsuI	RGATCY	3 cut(s)	480, 764, 1112
RsaI	GTAC	5 cut(s)	199, 346, 449, 986, 1106
RsaNI	GTAC	5 cut(s)	198, 345, 448, 985, 1105
RseI	CAYNNNNRTG	4 cut(s)	185, 1088, 1310, 1343
SaqAI	TTAA	4 cut(s)	588, 623, 801, 1086
Sau96I	GGNCC	2 cut(s)	148, 1241
SchI	GAGTC	4 cut(s)	277, 531, 836, 1159
SfaNI	GCATC	2 cut(s)	53, 1314
SfcI	CTRYAG	2 cut(s)	760, 1332
SfuI	TTCGAA	1 cut(s)	1131
SinI	GGWCC	1 cut(s)	1241
SmiMI	CAYNNNNRTG	4 cut(s)	185, 1088, 1310, 1343
SmlI	CTYRAG	3 cut(s)	92, 476, 800
SmoI	CTYRAG	3 cut(s)	92, 476, 800
Sse9I	AATT	4 cut(s)	509, 567, 698, 999
SsiI	CCGC	3 cut(s)	495, 1061, 1329
SspMI	CTAG	2 cut(s)	434, 609
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	8 cut(s)	209, 337, 344, 386, 554, 824, 1050, 1359
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	9 cut(s)	164, 561, 664, 681, 711, 963, 1041, 1131, 1163
TasI	AATT	4 cut(s)	509, 567, 698, 999
TfiI	GAWTC	4 cut(s)	131, 166, 547, 685
Tru1I	TTAA	4 cut(s)	588, 623, 801, 1086
Tru9I	TTAA	4 cut(s)	588, 623, 801, 1086
TscAI	CASTG	2 cut(s)	557, 829
TseFI	GTSAC	3 cut(s)	404, 502, 1135
Tsp45I	GTSAC	3 cut(s)	404, 502, 1135
TspDTI	ATGAA	4 cut(s)	77, 89, 272, 560
TspRI	CASTG	2 cut(s)	557, 829
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	1241
XapI	RAATTY	2 cut(s)	509, 698
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	2 cut(s)	434, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.