Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Forward (+)

26917259 .. 26919732

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G309400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTTGCTGAACTTGGAGAGTCTGCTGCAATGGACAACAACTCTAATGGCGGCGGCAATGTGTTCCAACTAAGAGTGAAGCAAGGAGAGCCAACTCTGGTTTCCCCTGCAGAGGAAACAGAGAAGGGTTTATATTTTCTCTCCAACCTCGACCAAAACATTGCGGTGACTGTTCGTACTATTTATTGCTTCAAGTCAGATGACAAAGGAAATGACAAGGCAGGGGAAGTGATCAAGAATTCTTTGAAGAAGGTTCTTGTCCACTATTACCCTCTTGCCGGGAGACTAACAATCAGCTCAGAGGGAAAGCTCATTGTAGATTGCACCGGTGAAGGAGCTGTTTTTGTCGAGGCTGAAGCAGATTGCAGAATTGAAGATATTGGAGACATAACAAAGCCTGACCCTGAGACTCTTGGACAGCTGGTTTATGATGTTCCTGGTGCCAAGAACATACTAGAGCTGCCTCCTCTGGTGGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGCTCTAGGCCTGTGCATGAACCACTGTATGTTTGATGGCATTGGCGCTATGGAATTTGTGAACTCATGGGCTAAAATTGCCAGAGGTTTGCCATTGACAGTGCCTCCATTTTTAGACAGAAGCATACTCAAAGCACGGAACCCACCAACTATAGAGCACCTGCATCAAGAATTCTCAGAGATTATTGGCACTTCCAGCACCAGTAATGACCTTTCTGAAGAAAAAATGCTATACAACTCCTTCTGCTTTGACAGTGAGAAGCTTGAAAAAGTGAAAATGAAAGCCAGGGAAGACAGGGCTCTTGACAATTGCACTACATTTGAAGCTCTCTCAGCATTCGTGTGGAAAGCTCGAACCACAGCTCTAAAACTGTTGCCTGAACAACAAATAAAGCTCCTATTTGCTGTTGATGGGAGGCGTAAGTTCAGCCCACCACTGCCAAAAGGGTACTTCGGCAATGGCATTGTGTTGACAAATTCCATCTGCCAAGCAGGTGATCTGCTGGAGAAGCCACTGTCACATGCAGTTGGGCTGGTTCAAGATGCAATTAAGATGGTCACTGACAGTTACATGAGATCAGCAATAGATTATTTCGAACTGACAAGAGCTAGGCCTTCTTTGGCCTCCACCCTCTTGATCACAACTTGGTCTAGGCTGTCCTTCTACACAACTGACTTTGGCTGGGGAGAGCCTATACTTTCAGGTCCAGTGGCATTGCCTGAGAAGGAAGTCATCTTATTCCTTTCTAATGGGACAGAAAAGAAGAACATAAACGTGCTTTTGGGTCTTCCAGCTTCTGCTATGAAGGTGTTTCAGGAACTGATGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

447

Amino Acids

49.02

Weight (kDa)

5.41

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	675, 989
Acc36I	ACCTGC	2 cut(s)	675, 989
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	3 cut(s)	51, 54, 164
AcsI	RAATTY	5 cut(s)	238, 488, 560, 677, 982
AcuI	CTGAAG	2 cut(s)	375, 744
AfaI	GTAC	2 cut(s)	178, 956
AfiI	CCNNNNNNNGG	2 cut(s)	112, 278
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	7 cut(s)	193, 247, 374, 493, 773, 830, 1046
AjnI	CCWGG	2 cut(s)	436, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	3 cut(s)	277, 378, 401
AlwNI	CAGNNNCTG	2 cut(s)	1304, 1327
AoxI	GGCC	3 cut(s)	514, 1118, 1128
ApeKI	GCWGC	2 cut(s)	26, 460
ApoI	RAATTY	5 cut(s)	238, 488, 560, 677, 982
AsiGI	ACCGGT	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	1211
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	4 cut(s)	178, 341, 493, 1013
AsuII	TTCGAA	1 cut(s)	1101
AvaII	GGWCC	1 cut(s)	1211
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	808
BbsI	GAAGAC	2 cut(s)	804, 1286
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	13, 447
BccI	CCATC	4 cut(s)	536, 911, 995, 1054
BciT130I	CCWGG	2 cut(s)	438, 793
BclI	TGATCA	2 cut(s)	231, 1143
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	277, 378, 401
BfaI	CTAG	5 cut(s)	455, 512, 1116, 1158, 1339
BfmI	CTRYAG	2 cut(s)	108, 657
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	2 cut(s)	675, 989
BisI	GCNGC	4 cut(s)	27, 52, 55, 461
BlsI	GCNGC	4 cut(s)	28, 53, 56, 462
Bme1390I	CCNGG	3 cut(s)	280, 438, 793
Bme18I	GGWCC	1 cut(s)	1211
BmgT120I	GGNCC	1 cut(s)	1211
BmiI	GGNNCC	2 cut(s)	442, 647
BmrFI	CCNGG	3 cut(s)	280, 438, 793
BmsI	GCATC	2 cut(s)	679, 1039
BpiI	GAAGAC	2 cut(s)	804, 1286
BpmI	CTGGAG	1 cut(s)	1031
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	1101
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	792
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 278
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	708, 1214
Bse3DI	GCAATG	5 cut(s)	36, 64, 159, 970, 1220
BseBI	CCWGG	2 cut(s)	438, 793
BseDI	CCNNGG	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	112, 278
BseMI	GCAATG	5 cut(s)	36, 64, 159, 970, 1220
BseMII	CTCAG	6 cut(s)	312, 396, 491, 696, 852, 1218
BseNI	ACTGG	2 cut(s)	708, 1214
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	13, 447
BseYI	CCCAGC	1 cut(s)	1188
BshFI	GGCC	3 cut(s)	516, 1120, 1130
BshNI	GGYRCC	1 cut(s)	440
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	279, 327
BslFI	GGGAC	1 cut(s)	1273
BslI	CCNNNNNNNGG	2 cut(s)	112, 278
BsmAI	GTCTC	3 cut(s)	277, 378, 401
BsmFI	GGGAC	1 cut(s)	1273
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	3 cut(s)	516, 1120, 1130
Bsp119I	TTCGAA	1 cut(s)	1101
Bsp1286I	GDGCHC	2 cut(s)	666, 808
Bsp143I	GATC	4 cut(s)	231, 1003, 1082, 1143
BspACI	CCGC	3 cut(s)	51, 54, 164
BspANI	GGCC	3 cut(s)	516, 1120, 1130
BspCNI	CTCAG	6 cut(s)	311, 397, 490, 695, 851, 1219
BspLI	GGNNCC	2 cut(s)	442, 647
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	675, 989
BspT104I	TTCGAA	1 cut(s)	1101
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	5 cut(s)	36, 64, 159, 970, 1220
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	708, 1214
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	4 cut(s)	231, 1003, 1082, 1143
Bst2UI	CCWGG	2 cut(s)	438, 793
Bst4CI	ACNGT	7 cut(s)	172, 533, 607, 761, 879, 1023, 1073
BstBI	TTCGAA	1 cut(s)	1101
BstDEI	CTNAG	7 cut(s)	71, 298, 405, 477, 682, 838, 1227
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	4 cut(s)	234, 1006, 1085, 1146
BstMAI	GTCTC	3 cut(s)	277, 378, 401
BstMBI	GATC	4 cut(s)	231, 1003, 1082, 1143
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 584, 702, 839, 1015
BstNI	CCWGG	2 cut(s)	438, 793
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	3 cut(s)	278, 436, 791
BstSFI	CTRYAG	2 cut(s)	108, 657
BstV1I	GCAGC	2 cut(s)	13, 447
BstV2I	GAAGAC	2 cut(s)	804, 1286
BsuRI	GGCC	3 cut(s)	516, 1120, 1130
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	7 cut(s)	529, 612, 766, 941, 1019, 1065, 1221
BveI	ACCTGC	2 cut(s)	675, 989
CaiI	CAGNNNCTG	2 cut(s)	1304, 1327
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	1211
Csp6I	GTAC	2 cut(s)	177, 955
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	4 cut(s)	523, 573, 1028, 1078
CviQI	GTAC	2 cut(s)	177, 955
DdeI	CTNAG	7 cut(s)	71, 298, 405, 477, 682, 838, 1227
DpnI	GATC	4 cut(s)	233, 1005, 1084, 1145
DpnII	GATC	4 cut(s)	231, 1003, 1082, 1143
Eco147I	AGGCCT	2 cut(s)	516, 1120
Eco24I	GRGCYC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	1211
Eco57I	CTGAAG	2 cut(s)	375, 744
EcoRI	GAATTC	2 cut(s)	238, 677
EcoRII	CCWGG	2 cut(s)	436, 791
EcoT38I	GRGCYC	1 cut(s)	808
FaeI	CATG	4 cut(s)	526, 576, 1031, 1081
FaqI	GGGAC	1 cut(s)	1273
FatI	CATG	4 cut(s)	522, 572, 1027, 1077
FbaI	TGATCA	2 cut(s)	231, 1143
Fnu4HI	GCNGC	4 cut(s)	27, 52, 55, 461
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	4 cut(s)	27, 52, 55, 461
FspBI	CTAG	5 cut(s)	455, 512, 1116, 1158, 1339
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	4 cut(s)	27, 52, 55, 461
GsaI	CCCAGC	1 cut(s)	1192
GsuI	CTGGAG	1 cut(s)	1031
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	516, 1120, 1130
HapII	CCGG	2 cut(s)	279, 327
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	526, 576, 1031, 1081
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	2 cut(s)	20, 409
HpaII	CCGG	2 cut(s)	279, 327
HphI	GGTGA	4 cut(s)	178, 341, 493, 1013
Hpy166II	GTNNAC	3 cut(s)	262, 568, 978
Hpy188I	TCNGA	4 cut(s)	199, 301, 685, 724
Hpy188III	TCNNGA	6 cut(s)	235, 674, 809, 1046, 1141, 1322
Hpy8I	GTNNAC	3 cut(s)	262, 568, 978
HpyAV	CCTTC	8 cut(s)	118, 244, 326, 757, 1131, 1177, 1225, 1306
HpyCH4III	ACNGT	7 cut(s)	172, 533, 607, 761, 879, 1023, 1073
HpyCH4IV	ACGT	1 cut(s)	1281
HpyCH4V	TGCA	9 cut(s)	29, 110, 324, 366, 522, 670, 819, 1031, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 584, 702, 839, 1015
HpyF3I	CTNAG	7 cut(s)	71, 298, 405, 477, 682, 838, 1227
HpySE526I	ACGT	1 cut(s)	1281
Hsp92II	CATG	4 cut(s)	526, 576, 1031, 1081
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	2 cut(s)	231, 1143
Kzo9I	GATC	4 cut(s)	231, 1003, 1082, 1143
LmnI	GCTCC	2 cut(s)	335, 906
Lsp1109I	GCAGC	2 cut(s)	13, 447
LweI	GCATC	2 cut(s)	679, 1039
MaeI	CTAG	5 cut(s)	455, 512, 1116, 1158, 1339
MaeII	ACGT	1 cut(s)	1281
MaeIII	GTNAC	5 cut(s)	166, 481, 1023, 1063, 1073
MalI	GATC	4 cut(s)	233, 1005, 1084, 1145
MboI	GATC	4 cut(s)	231, 1003, 1082, 1143
MboII	GAAGA	6 cut(s)	259, 386, 737, 809, 1282, 1286
MfeI	CAATTG	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	666, 808
MluCI	AATT	9 cut(s)	238, 369, 488, 560, 582, 677, 814, 982, 1053
MlyI	GAGTC	2 cut(s)	29, 403
MmeI	TCCRAC	2 cut(s)	91, 168
MseI	TTAA	1 cut(s)	1056
MslI	CAYNNNNRTG	3 cut(s)	164, 847, 1280
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	279, 327
MspR9I	CCNGG	3 cut(s)	280, 438, 793
MunI	CAATTG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	2 cut(s)	438, 793
MwoI	GCNNNNNNNGC	5 cut(s)	88, 584, 702, 839, 1015
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	231, 1003, 1082, 1143
NlaIII	CATG	4 cut(s)	526, 576, 1031, 1081
NlaIV	GGNNCC	2 cut(s)	442, 647
NmuCI	GTSAC	4 cut(s)	166, 481, 1023, 1063
NspI	RCATGY	1 cut(s)	1031
NspV	TTCGAA	1 cut(s)	1101
PaqCI	CACCTGC	2 cut(s)	675, 989
PceI	AGGCCT	2 cut(s)	516, 1120
PctI	GAATGC	1 cut(s)	842
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	28, 53, 56, 462
PleI	GAGTC	2 cut(s)	28, 403
PpsI	GAGTC	2 cut(s)	28, 403
Psp6I	CCWGG	2 cut(s)	436, 791
PspFI	CCCAGC	1 cut(s)	1188
PspGI	CCWGG	2 cut(s)	436, 791
PspN4I	GGNNCC	2 cut(s)	442, 647
PspPI	GGNCC	1 cut(s)	1211
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	2 cut(s)	1304, 1327
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	178, 956
RsaNI	GTAC	2 cut(s)	177, 955
RseI	CAYNNNNRTG	3 cut(s)	164, 847, 1280
SaqAI	TTAA	1 cut(s)	1056
SatI	GCNGC	4 cut(s)	27, 52, 55, 461
Sau3AI	GATC	4 cut(s)	231, 1003, 1082, 1143
Sau96I	GGNCC	1 cut(s)	1211
SchI	GAGTC	2 cut(s)	29, 403
ScrFI	CCNGG	3 cut(s)	280, 438, 793
SduI	GDGCHC	2 cut(s)	666, 808
SfaNI	GCATC	2 cut(s)	679, 1039
SfcI	CTRYAG	2 cut(s)	108, 657
SfuI	TTCGAA	1 cut(s)	1101
SgrAI	CRCCGGYG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	1211
SmiMI	CAYNNNNRTG	3 cut(s)	164, 847, 1280
Sse9I	AATT	9 cut(s)	238, 369, 488, 560, 582, 677, 814, 982, 1053
SseBI	AGGCCT	2 cut(s)	516, 1120
SsiI	CCGC	3 cut(s)	51, 54, 164
SspMI	CTAG	5 cut(s)	455, 512, 1116, 1158, 1339
StuI	AGGCCT	2 cut(s)	516, 1120
StyD4I	CCNGG	3 cut(s)	278, 436, 791
TaaI	ACNGT	7 cut(s)	172, 533, 607, 761, 879, 1023, 1073
TaiI	ACGT	1 cut(s)	1284
TaqI	TCGA	4 cut(s)	150, 348, 859, 1101
TasI	AATT	9 cut(s)	238, 369, 488, 560, 582, 677, 814, 982, 1053
TauI	GCSGC	2 cut(s)	54, 57
Tru1I	TTAA	1 cut(s)	1056
Tru9I	TTAA	1 cut(s)	1056
TscAI	CASTG	7 cut(s)	536, 612, 766, 948, 1026, 1072, 1221
TseFI	GTSAC	4 cut(s)	166, 481, 1023, 1063
TseI	GCWGC	2 cut(s)	26, 460
Tsp45I	GTSAC	4 cut(s)	166, 481, 1023, 1063
TspDTI	ATGAA	3 cut(s)	539, 800, 1325
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	7 cut(s)	536, 612, 766, 948, 1026, 1072, 1221
VpaK11BI	GGWCC	1 cut(s)	1211
XapI	RAATTY	5 cut(s)	238, 488, 560, 677, 982
XceI	RCATGY	1 cut(s)	1031
XspI	CTAG	5 cut(s)	455, 512, 1116, 1158, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.