Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Forward (+)

71203770 .. 71205409

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATATAGCGCCTTCCATCACCACCACGACCACCACCACCAGCACCAAATCCCCCGAAGCCGACAGCGACACTCCGACCCGGATCCAGCCCGCCAAGCCCATCTCCTTCAGCAACGGGGTCCTCAAGCGCCACCACCCCGCCCACCACAACAGCAGCATCCCTGTCACTCCCGTCGTAGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACGGACCCCACCTCGCTAAAATGCGCCGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCAGTCGCTCCCGCAACTCATGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCCCCGCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTGCTCGCTCTCTCCACCGGGATTTCTGACAACCCGAACAACCACCACGGCGGCCAAATTGTGTCCCCCGGCGGGTCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCCAGTTTGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAGGTGTGGATGCACAACAACAAGAACAGCTTCGCCAAGCGCGACGGCAGCGGTGGCGCTGGTAATGGCATTAACACAACCGCCGCAGCGAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAGCAACGAAGAGGACGAGGACGACGATCATCCCAACAACAACAACAACACCAACGGTGGTGAGAGTCTGAGCAACATTCCGAACCCGATTCACCATCACTACCAGCTTGGCGGCGATCACCCGCACGGTGTCACTAACGGTGGGTCGTCATCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

349

Amino Acids

37.71

Weight (kDa)

6.79

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	61 - 115	2.3e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	678, 777
AccIII	TCCGGA	1 cut(s)	600
AclWI	GGATC	2 cut(s)	79, 92
AcoI	YGGCCR	2 cut(s)	226, 556
AcuI	CTGAAG	2 cut(s)	94, 474
AfaI	GTAC	2 cut(s)	392, 841
AfiI	CCNNNNNNNGG	4 cut(s)	343, 431, 576, 646
AjnI	CCWGG	1 cut(s)	615
AleI	CACNNNNGTG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	219, 455, 494, 765, 994
AluI	AGCT	5 cut(s)	219, 455, 494, 765, 994
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	2 cut(s)	79, 92
Aor13HI	TCCGGA	1 cut(s)	600
AoxI	GGCC	2 cut(s)	226, 556
ApeKI	GCWGC	4 cut(s)	156, 505, 783, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
Asp700I	GAANNNNTTC	2 cut(s)	596, 764
AspLEI	GCGC	6 cut(s)	13, 132, 305, 678, 777, 794
AspS9I	GGNCC	4 cut(s)	121, 283, 603, 847
AsuC2I	CCSGG	3 cut(s)	82, 523, 573
AsuHPI	GGTGA	5 cut(s)	13, 175, 959, 971, 998
AvaII	GGWCC	4 cut(s)	121, 283, 603, 847
BamHI	GGATCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	446
BbvI	GCAGC	4 cut(s)	168, 492, 795, 833
BccI	CCATC	3 cut(s)	26, 110, 990
BceAI	ACGGC	3 cut(s)	321, 568, 796
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	3 cut(s)	82, 523, 573
BcoDI	GTCTC	1 cut(s)	820
BfoI	RGCGCY	3 cut(s)	14, 133, 795
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	4 cut(s)	82, 523, 573, 617
Bme18I	GGWCC	4 cut(s)	121, 283, 603, 847
BmgT120I	GGNCC	4 cut(s)	121, 283, 603, 847
BmiI	GGNNCC	5 cut(s)	86, 122, 285, 443, 599
BmrFI	CCNGG	4 cut(s)	82, 523, 573, 617
BmsI	GCATC	4 cut(s)	168, 305, 657, 735
BpuEI	CTTGAG	3 cut(s)	110, 185, 719
BpuMI	CCSGG	3 cut(s)	82, 523, 573
BsaJI	CCNNGG	2 cut(s)	550, 571
BsaWI	WCCGGW	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 431, 576, 646
Bse1I	ACTGG	1 cut(s)	640
BseAI	TCCGGA	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	550, 571
BseGI	GGATG	4 cut(s)	159, 320, 750, 916
BseLI	CCNNNNNNNGG	4 cut(s)	343, 431, 576, 646
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	463, 466
BseXI	GCAGC	4 cut(s)	168, 492, 795, 833
Bsh1236I	CGCG	2 cut(s)	678, 777
BshFI	GGCC	2 cut(s)	228, 558
BsiSI	CCGG	6 cut(s)	82, 344, 359, 522, 573, 601
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	343, 431, 576, 646
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	228, 558
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	84, 468, 913, 1003
BspANI	GGCC	2 cut(s)	228, 558
BspCNI	CTCAG	1 cut(s)	948
BspEI	TCCGGA	1 cut(s)	600
BspFNI	CGCG	2 cut(s)	678, 777
BspLI	GGNNCC	5 cut(s)	86, 122, 285, 443, 599
BspPI	GGATC	2 cut(s)	79, 92
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	550, 571
BssMI	GATC	4 cut(s)	84, 468, 913, 1003
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	6 cut(s)	242, 839, 872, 944, 1016, 1028
Bst6I	CTCTTC	1 cut(s)	891
BstC8I	GCNNGC	4 cut(s)	93, 217, 310, 510
BstDEI	CTNAG	1 cut(s)	956
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	159, 320, 750, 916
BstFNI	CGCG	2 cut(s)	678, 777
BstH2I	RGCGCY	3 cut(s)	14, 133, 795
BstHHI	GCGC	6 cut(s)	13, 132, 305, 678, 777, 794
BstKTI	GATC	4 cut(s)	87, 471, 916, 1006
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	4 cut(s)	84, 468, 913, 1003
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 225, 309, 783, 789
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	80, 521, 571, 615
BstUI	CGCG	2 cut(s)	678, 777
BstV1I	GCAGC	4 cut(s)	168, 492, 795, 833
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	228, 558
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	4 cut(s)	159, 320, 750, 916
Cac8I	GCNNGC	4 cut(s)	93, 217, 310, 510
CfoI	GCGC	6 cut(s)	13, 132, 305, 678, 777, 794
Cfr13I	GGNCC	4 cut(s)	121, 283, 603, 847
Csp6I	GTAC	2 cut(s)	391, 840
CviAII	CATG	5 cut(s)	256, 380, 502, 695, 865
CviQI	GTAC	2 cut(s)	391, 840
DdeI	CTNAG	1 cut(s)	956
DpnI	GATC	4 cut(s)	86, 470, 915, 1005
DpnII	GATC	4 cut(s)	84, 468, 913, 1003
EaeI	YGGCCR	2 cut(s)	226, 556
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	4 cut(s)	121, 283, 603, 847
Eco57I	CTGAAG	2 cut(s)	94, 474
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	5 cut(s)	259, 383, 505, 698, 868
FaiI	YATR	6 cut(s)	8, 257, 381, 503, 696, 866
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	5 cut(s)	255, 379, 501, 694, 864
FauI	CCCGC	7 cut(s)	100, 148, 379, 423, 468, 569, 1017
FokI	GGATG	4 cut(s)	146, 327, 757, 903
FriOI	GRGCYC	1 cut(s)	446
GlaI	GCGC	6 cut(s)	12, 131, 304, 677, 776, 793
HaeII	RGCGCY	3 cut(s)	14, 133, 795
HaeIII	GGCC	2 cut(s)	228, 558
HapII	CCGG	6 cut(s)	82, 344, 359, 522, 573, 601
HhaI	GCGC	6 cut(s)	13, 132, 305, 678, 777, 794
Hin1II	CATG	5 cut(s)	259, 383, 505, 698, 868
Hin6I	GCGC	6 cut(s)	11, 130, 303, 676, 775, 792
HinP1I	GCGC	6 cut(s)	11, 130, 303, 676, 775, 792
HinfI	GANTC	3 cut(s)	717, 952, 976
HpaII	CCGG	6 cut(s)	82, 344, 359, 522, 573, 601
HphI	GGTGA	5 cut(s)	13, 175, 959, 971, 998
Hpy188I	TCNGA	5 cut(s)	78, 532, 716, 957, 969
Hpy188III	TCNNGA	4 cut(s)	202, 433, 601, 1047
Hpy99I	CGWCG	5 cut(s)	179, 242, 683, 782, 914
HpyAV	CCTTC	5 cut(s)	24, 118, 270, 498, 619
HpyCH4III	ACNGT	6 cut(s)	242, 839, 872, 944, 1016, 1028
HpyCH4V	TGCA	3 cut(s)	670, 705, 748
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 225, 309, 783, 789
HpyF3I	CTNAG	1 cut(s)	956
Hsp92II	CATG	5 cut(s)	259, 383, 505, 698, 868
HspAI	GCGC	6 cut(s)	11, 130, 303, 676, 775, 792
Kpn2I	TCCGGA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	84, 468, 913, 1003
LmnI	GCTCC	4 cut(s)	373, 441, 499, 619
Lsp1109I	GCAGC	4 cut(s)	168, 492, 795, 833
LweI	GCATC	4 cut(s)	168, 305, 657, 735
MaeIII	GTNAC	4 cut(s)	166, 181, 872, 1018
MalI	GATC	4 cut(s)	86, 470, 915, 1005
MboI	GATC	4 cut(s)	84, 468, 913, 1003
MboII	GAAGA	4 cut(s)	676, 908, 1032, 1035
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	3 cut(s)	325, 448, 561
MlyI	GAGTC	2 cut(s)	726, 961
MmeI	TCCRAC	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	600
MroXI	GAANNNNTTC	2 cut(s)	596, 764
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	786
MspI	CCGG	6 cut(s)	82, 344, 359, 522, 573, 601
MspR9I	CCNGG	4 cut(s)	82, 523, 573, 617
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	2 cut(s)	678, 777
MwoI	GCNNNNNNNGC	5 cut(s)	97, 225, 309, 783, 789
NciI	CCSGG	3 cut(s)	82, 523, 573
NdeII	GATC	4 cut(s)	84, 468, 913, 1003
NlaIII	CATG	5 cut(s)	259, 383, 505, 698, 868
NlaIV	GGNNCC	5 cut(s)	86, 122, 285, 443, 599
NmuCI	GTSAC	3 cut(s)	166, 181, 1018
NspI	RCATGY	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	5 cut(s)	246, 687, 774, 900, 909
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	2 cut(s)	596, 764
PfeI	GAWTC	1 cut(s)	976
PflFI	GACNNNGTC	1 cut(s)	689
PleI	GAGTC	2 cut(s)	725, 960
PpsI	GAGTC	2 cut(s)	725, 960
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	5 cut(s)	86, 122, 285, 443, 599
PspPI	GGNCC	4 cut(s)	121, 283, 603, 847
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	689
RsaI	GTAC	2 cut(s)	392, 841
RsaNI	GTAC	2 cut(s)	391, 840
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	807
Sau3AI	GATC	4 cut(s)	84, 468, 913, 1003
Sau96I	GGNCC	4 cut(s)	121, 283, 603, 847
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	726, 961
ScrFI	CCNGG	4 cut(s)	82, 523, 573, 617
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	8 cut(s)	188, 221, 293, 457, 496, 741, 767, 996
SfaNI	GCATC	4 cut(s)	168, 305, 657, 735
SinI	GGWCC	4 cut(s)	121, 283, 603, 847
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	125, 200, 734
SmoI	CTYRAG	3 cut(s)	125, 200, 734
Sse9I	AATT	3 cut(s)	325, 448, 561
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	4 cut(s)	80, 521, 571, 615
TaaI	ACNGT	6 cut(s)	242, 839, 872, 944, 1016, 1028
TaqI	TCGA	3 cut(s)	237, 387, 720
TasI	AATT	3 cut(s)	325, 448, 561
TatI	WGTACW	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	976
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TseFI	GTSAC	3 cut(s)	166, 181, 1018
TseI	GCWGC	4 cut(s)	156, 505, 783, 821
Tsp45I	GTSAC	3 cut(s)	166, 181, 1018
TspDTI	ATGAA	2 cut(s)	244, 881
TspGWI	ACGGA	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	4 cut(s)	121, 283, 603, 847
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmnI	GAANNNNTTC	2 cut(s)	596, 764
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.