Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Reverse (-)

71171317 .. 71177648

Gene Structure 6332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGAGCCGCCAACATCATCCAAGGCAAAGAAGAGTCGCTCGCAGCGACTTTGCCTCCAACCCTACGAAGAATCCAAATACCCGTACGGCAACAACCACCAAGTACCAGCGAAGCCAGAGGACTGCACGGCCAAATACGAGAAAACACAAGGATTGTGGAGAAGCATTGAAGATGAGAGCATTGCAGAAAAGGAAGCTGAAGAAGTTGCAGGAGGAGAAGGAAAGAGAGCTGCTGTCGAAAAGCGTTGGATATAAGATTCCAGAGGCCTTCAGTCATCGCGGAACATTGGCCAGTGTTTTCTTCGTTAAGGTTGAATGTAGAAAGGTTAAATGTGGCAAAGCTGCTGGATTTGGAGTTCCCCGTACCGACCAAGCATTTAGAACGGAAGATGGCGACGGTGCTTGCTGTGAAAGTGAATCTGAGTTGGAAATAATTCAATCAATGCAGGGTCTTGACAGGAAGGATCAGGTGCAATCAACGATAGTAGAAAAACAAGTCGAGAAGAACACATCTATTTCTTTGCACTGCTCTCAGGGGCTTGTTTGTGGTAGAAGACTTGACATGAATGGTGGATGTGCAGCTGTCTCACTATCTGAAAATGATATTAGTTACACGTATGACATGTCTCTACGGGAAAACACAAATATTTTCTGCACTTCAAGCATGAATGATGACAGTGAAAGCACAAACTCAATGGTGCATATTGGACGGGATAAGATAAAAGAGAGTCCAAAGCCAAATACGAGCTGGGAAAATGGATTAGCAGATTTTCCTGCACTGAGTTTTCTGAAAGATTCAAAGAATAGGCGGCATATATCAAGACCTCGTGAAGTTGTAGATGCAAGGAATGATATTCCAATAGTAATGATGGAGCAAGAGAATAATGGAGGCTATAAACGAGCATTCCACTTTGGCATCGGTTCAAGCGGGTGCCCTCTTGGAAGTGGTATTATTGGTGTTACTCAACCCCGCTGCATTGCAGTCACTGCGACTGCTAAGCGTGTGGCATATGAGCTTGGTCTACAATTGGGTGAGGAGGTTGGATTTCAATATAGATATGACAAAAAGGGTGATTTTTATTTGAAGAGATACTCTGTCATAATTCTTGATGAGGTCCATGAGCGGAGCTTGTGCACAGAGACGCTCATCGGAATGCTTTCAGCTATAATTGGTGTTCGTCAGAAATTATATGAAGATCAGCAGAAGAAATTGCGTCAAGGACTATCAATAGTTCGTGAGAAAAGGATTTTTCCATTGAAGCTTGTGCTCATGAGTGCTACCATGCCAGTGGAAGACTTTAGAAAGATGTTTTCAGATCCCCCACAAGTTATAAATGTTTCGTCCAGACAATTTAAAGTAAGCACTCAGTTCTCAGCGACAACTGAAGGTCATTATATTAATGAAGCATACAAAAAAGTCTTGGAAATTCATAAGACGCTGCCTCATGGAGGCATACTTGTCTTTCTCACCGGGTATCGGGAAATAGAGGAATTGTGTCGAAAGCTACGCAGACATTCAAGGAAACTTATAAAAACATCAATTGGAAGTTGTGCCACTGAAGGTCGTGAAATAAACTCTGTTGAGGAAATAAATATGAAGAAAGAAATGGAAGCATTTGACAGTAATGGTAATTCAGCCTTCCATCAAACTGATGGATTTGGCTATAATGATGAAGATCATTGTGAGACAGACGAGTATGAGTTGGATTCTATATATGATGCAGAAACAGAGAGTGAGCTAGAAACTATTGGTGATGATAGGGATTCATTATGCGAAGATAAACAAGAAGTTGATGACTCTACTTCAGCTTGCAGAGAACCTATCTCATGTACTCTGGACTCTTGCTCTAACCAATCCAATCATAGTTGTAGCTTGGGGACAAAAGGTGGGGTTGAAGACCCTGGAAAACTAGGTTCACTGCGTGTTCTTCCTCTTTATTCCATGCTCCCTGCAGCAGCTCAGCGTCATGTATTTGAAAAAGTCAAGGAGGGGGAACGACTTGTTGTGGCGACTAATGTGGCTGAAACCTCTTTAACTATACCTGGGATAAAGTATGTAGTCGACACTGGAAAAGTGAAAGTGAAGGACTACAATTTCTCAAATGGCATGGAAACATATAAGGTACAGTGGATTAGTAAGGCATCAGCTATTCAACGCGAAGGAAGAGCTGGAAGAACAGGGCCTGGCCACTGTTTCCGCTTGTATTCTTCTGCAGTATATGACAATGAGTTTCTTGACTGTTCCGAAGCTGAAATATCCAAAGTCCCTGTTGATGGTGTTCTCCTTCTTATGAAGGCTATGAAAATACCGGTATCCAAATTTCAGTTTCCTACTCCTCCAAATGGTGATACTATTGATGAAGCAGAGGATCGTTTGAAGCTCCTCAAAGCACTTGATAGCAATGGAGAGGTGACACCTTTAGGGAAGGCCATGGCTTGTTACCCCATAAGTCCTCGCCAATCTAAGATGCTCCTTACGGTCATTGAAATCCTGAATATGAAGCAAAGTTATATATTCCCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

841

Amino Acids

94.31

Weight (kDa)

8.16

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	639 - 727	2.7e-09	Helicase conserved C-terminal domain
WHD_HA2	PF04408	788 - 816	5.9e-07	Helicase associated domain (HA2), winged-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1331, 1529
AccB1I	GGYRCC	1 cut(s)	930
AccBSI	CCGCTC	1 cut(s)	1123
AccI	GTMKAC	2 cut(s)	1021, 2061
AccII	CGCG	2 cut(s)	279, 2157
AciI	CCGC	7 cut(s)	7, 279, 808, 927, 970, 1123, 2197
AclWI	GGATC	3 cut(s)	471, 1310, 2376
AcoI	YGGCCR	3 cut(s)	128, 288, 2185
AcsI	RAATTY	2 cut(s)	1425, 2318
AcuI	CTGAAG	5 cut(s)	218, 253, 1404, 1578, 1788
AdeI	CACNNNGTG	1 cut(s)	1922
AfaI	GTAC	5 cut(s)	85, 104, 364, 1831, 2124
AfiI	CCNNNNNNNGG	4 cut(s)	1448, 1476, 2273, 2342
AflIII	ACRYGT	2 cut(s)	612, 621
AgeI	ACCGGT	1 cut(s)	2308
AjnI	CCWGG	3 cut(s)	1900, 2041, 2182
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
Alw21I	GWGCWC	2 cut(s)	1136, 1269
Alw26I	GTCTC	4 cut(s)	589, 630, 1133, 1679
Alw44I	GTGCAC	1 cut(s)	1132
AlwI	GGATC	3 cut(s)	471, 1310, 2376
AlwNI	CAGNNNCTG	2 cut(s)	986, 2183
Ama87I	CYCGRG	1 cut(s)	2518
AoxI	GGCC	6 cut(s)	128, 264, 288, 2180, 2185, 2427
ApaLI	GTGCAC	1 cut(s)	1132
ApeKI	GCWGC	8 cut(s)	42, 229, 341, 578, 972, 1438, 1952, 1955
ApoI	RAATTY	2 cut(s)	1425, 2318
AseI	ATTAAT	1 cut(s)	1398
AsiGI	ACCGGT	1 cut(s)	2308
Asp700I	GAANNNNTTC	2 cut(s)	432, 1156
AspS9I	GGNCC	2 cut(s)	1114, 2180
AsuC2I	CCSGG	1 cut(s)	1471
AsuHPI	GGTGA	6 cut(s)	1043, 1082, 1459, 1763, 2357, 2422
AvaI	CYCGRG	1 cut(s)	2518
AvaII	GGWCC	1 cut(s)	1114
BaeGI	GKGCMC	2 cut(s)	935, 1136
BalI	TGGCCA	2 cut(s)	290, 2187
BanI	GGYRCC	1 cut(s)	930
BauI	CACGAG	1 cut(s)	825
BbsI	GAAGAC	3 cut(s)	559, 1299, 1902
Bbv12I	GWGCWC	2 cut(s)	1136, 1269
BbvI	GCAGC	8 cut(s)	54, 216, 328, 590, 959, 1425, 1964, 1967
BccI	CCATC	5 cut(s)	383, 862, 1646, 1650, 2267
BceAI	ACGGC	2 cut(s)	102, 143
BciT130I	CCWGG	3 cut(s)	1902, 2043, 2184
BciVI	GTATCC	1 cut(s)	2323
BcnI	CCSGG	1 cut(s)	1471
BcoDI	GTCTC	4 cut(s)	589, 630, 1133, 1679
BfaI	CTAG	2 cut(s)	1739, 1910
BfmI	CTRYAG	2 cut(s)	1950, 2211
BfuI	GTATCC	1 cut(s)	2323
BlpI	GCTNAGC	2 cut(s)	996, 1959
Bme1390I	CCNGG	4 cut(s)	1471, 1902, 2043, 2184
Bme18I	GGWCC	1 cut(s)	1114
BmeT110I	CYCGRG	1 cut(s)	2518
BmgT120I	GGNCC	2 cut(s)	1114, 2180
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	4 cut(s)	1471, 1902, 2043, 2184
BmsI	GCATC	5 cut(s)	829, 924, 1708, 2150, 2457
BpiI	GAAGAC	3 cut(s)	559, 1299, 1902
Bpu1102I	GCTNAGC	2 cut(s)	996, 1959
BpuMI	CCSGG	1 cut(s)	1471
BsaAI	YACGTR	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	1674
BsaJI	CCNNGG	4 cut(s)	20, 1900, 2042, 2430
BsaWI	WCCGGW	1 cut(s)	2308
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	4 cut(s)	1448, 1476, 2273, 2342
Bse118I	RCCGGY	1 cut(s)	2308
Bse1I	ACTGG	3 cut(s)	291, 1286, 2071
Bse3DI	GCAATG	3 cut(s)	179, 975, 2407
Bse8I	GATNNNNATC	1 cut(s)	1674
BseBI	CCWGG	3 cut(s)	1902, 2043, 2184
BseDI	CCNNGG	4 cut(s)	20, 1900, 2042, 2430
BseGI	GGATG	2 cut(s)	16, 578
BseJI	GATNNNNATC	1 cut(s)	1674
BseLI	CCNNNNNNNGG	4 cut(s)	1448, 1476, 2273, 2342
BseMI	GCAATG	3 cut(s)	179, 975, 2407
BseMII	CTCAG	6 cut(s)	411, 545, 770, 1379, 1386, 1973
BseNI	ACTGG	3 cut(s)	291, 1286, 2071
BseRI	GAGGAG	4 cut(s)	227, 1049, 2325, 2372
BseSI	GKGCMC	2 cut(s)	935, 1136
BseXI	GCAGC	8 cut(s)	54, 216, 328, 590, 959, 1425, 1964, 1967
BseYI	CCCAGC	1 cut(s)	747
BsgI	GTGCAG	4 cut(s)	108, 597, 637, 759
Bsh1236I	CGCG	2 cut(s)	279, 2157
BshFI	GGCC	6 cut(s)	130, 266, 290, 2182, 2187, 2429
BshNI	GGYRCC	1 cut(s)	930
BshTI	ACCGGT	1 cut(s)	2308
BsiHKAI	GWGCWC	2 cut(s)	1136, 1269
BsiHKCI	CYCGRG	1 cut(s)	2518
BsiSI	CCGG	2 cut(s)	1470, 2309
BsiWI	CGTACG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	1891, 2249
BslI	CCNNNNNNNGG	4 cut(s)	1448, 1476, 2273, 2342
BsmAI	GTCTC	4 cut(s)	589, 630, 1133, 1679
BsmBI	CGTCTC	1 cut(s)	1133
BsmFI	GGGAC	2 cut(s)	1891, 2249
BsmI	GAATGC	2 cut(s)	902, 1158
BsnI	GGCC	6 cut(s)	130, 266, 290, 2182, 2187, 2429
BsoBI	CYCGRG	1 cut(s)	2518
Bsp1286I	GDGCHC	3 cut(s)	935, 1136, 1269
Bsp143I	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
Bsp1720I	GCTNAGC	2 cut(s)	996, 1959
Bsp19I	CCATGG	1 cut(s)	2430
BspACI	CCGC	7 cut(s)	7, 279, 808, 927, 970, 1123, 2197
BspANI	GGCC	6 cut(s)	130, 266, 290, 2182, 2187, 2429
BspCNI	CTCAG	6 cut(s)	412, 544, 771, 1378, 1385, 1972
BspFNI	CGCG	2 cut(s)	279, 2157
BspHI	TCATGA	1 cut(s)	1269
BspLI	GGNNCC	1 cut(s)	932
BspMAI	CTGCAG	2 cut(s)	1954, 2215
BspPI	GGATC	3 cut(s)	471, 1310, 2376
BspQI	GCTCTTC	1 cut(s)	2158
BspT107I	GGYRCC	1 cut(s)	930
BsrBI	CCGCTC	1 cut(s)	1123
BsrDI	GCAATG	3 cut(s)	179, 975, 2407
BsrFI	RCCGGY	1 cut(s)	2308
BsrI	ACTGG	3 cut(s)	291, 1286, 2071
BssAI	RCCGGY	1 cut(s)	2308
BssECI	CCNNGG	4 cut(s)	20, 1900, 2042, 2430
BssMI	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
BssSI	CACGAG	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	20, 2430
Bst2BI	CACGAG	1 cut(s)	825
Bst2UI	CCWGG	3 cut(s)	1902, 2043, 2184
Bst4CI	ACNGT	7 cut(s)	398, 677, 1622, 2127, 2192, 2240, 2479
Bst6I	CTCTTC	3 cut(s)	25, 1079, 2158
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	40, 403, 1810
BstDEI	CTNAG	8 cut(s)	420, 531, 779, 996, 1365, 1372, 1959, 2463
BstDSI	CCRYGG	1 cut(s)	2430
BstENI	CCTNNNNNAGG	1 cut(s)	1446
BstF5I	GGATG	2 cut(s)	16, 578
BstFNI	CGCG	2 cut(s)	279, 2157
BstKTI	GATC	5 cut(s)	466, 1198, 1318, 1678, 2371
BstMAI	GTCTC	4 cut(s)	589, 630, 1133, 1679
BstMBI	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 986
BstNI	CCWGG	3 cut(s)	1902, 2043, 2184
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	1469, 1900, 2041, 2182
BstSFI	CTRYAG	2 cut(s)	1950, 2211
BstSLI	GKGCMC	2 cut(s)	935, 1136
BstUI	CGCG	2 cut(s)	279, 2157
BstV1I	GCAGC	8 cut(s)	54, 216, 328, 590, 959, 1425, 1964, 1967
BstV2I	GAAGAC	3 cut(s)	559, 1299, 1902
BstX2I	RGATCY	1 cut(s)	1315
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BstYI	RGATCY	1 cut(s)	1315
BsuI	GTATCC	1 cut(s)	2323
BsuRI	GGCC	6 cut(s)	130, 266, 290, 2182, 2187, 2429
BtgI	CCRYGG	1 cut(s)	2430
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	16, 578
BtsI	GCAGTG	3 cut(s)	523, 984, 1916
Cac8I	GCNNGC	3 cut(s)	40, 403, 1810
CaiI	CAGNNNCTG	2 cut(s)	986, 2183
CciI	TCATGA	1 cut(s)	1269
Cfr10I	RCCGGY	1 cut(s)	2308
Cfr13I	GGNCC	2 cut(s)	1114, 2180
CseI	GACGC	4 cut(s)	1150, 1202, 1444, 1952
Csp6I	GTAC	5 cut(s)	84, 103, 363, 1830, 2123
CspAI	ACCGGT	1 cut(s)	2308
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviQI	GTAC	5 cut(s)	84, 103, 363, 1830, 2123
DdeI	CTNAG	8 cut(s)	420, 531, 779, 996, 1365, 1372, 1959, 2463
DpnI	GATC	5 cut(s)	465, 1197, 1317, 1677, 2370
DpnII	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
DraI	TTTAAA	1 cut(s)	1354
DraIII	CACNNNGTG	1 cut(s)	1922
EaeI	YGGCCR	3 cut(s)	128, 288, 2185
Eam1104I	CTCTTC	3 cut(s)	25, 1079, 2158
EarI	CTCTTC	3 cut(s)	25, 1079, 2158
Eco130I	CCWWGG	2 cut(s)	20, 2430
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	1114
Eco57I	CTGAAG	5 cut(s)	218, 253, 1404, 1578, 1788
Eco88I	CYCGRG	1 cut(s)	2518
EcoNI	CCTNNNNNAGG	1 cut(s)	1446
EcoO109I	RGGNCCY	1 cut(s)	2180
EcoRII	CCWGG	3 cut(s)	1900, 2041, 2182
EcoT14I	CCWWGG	2 cut(s)	20, 2430
ErhI	CCWWGG	2 cut(s)	20, 2430
Esp3I	CGTCTC	1 cut(s)	1133
FaqI	GGGAC	2 cut(s)	1891, 2249
FauI	CCCGC	2 cut(s)	920, 977
FauNDI	CATATG	1 cut(s)	1009
FblI	GTMKAC	2 cut(s)	1021, 2061
FokI	GGATG	2 cut(s)	3, 585
FspBI	CTAG	2 cut(s)	1739, 1910
GsaI	CCCAGC	1 cut(s)	751
HaeIII	GGCC	6 cut(s)	130, 266, 290, 2182, 2187, 2429
HapII	CCGG	2 cut(s)	1470, 2309
HgaI	GACGC	4 cut(s)	1150, 1202, 1444, 1952
HincII	GTYRAC	1 cut(s)	2062
HindII	GTYRAC	1 cut(s)	2062
HindIII	AAGCTT	1 cut(s)	1259
HpaII	CCGG	2 cut(s)	1470, 2309
HphI	GGTGA	6 cut(s)	1043, 1082, 1459, 1763, 2357, 2422
Hpy166II	GTNNAC	4 cut(s)	1022, 1134, 1916, 2062
Hpy188I	TCNGA	7 cut(s)	421, 595, 789, 1151, 1182, 1315, 2245
Hpy8I	GTNNAC	4 cut(s)	1022, 1134, 1916, 2062
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	7 cut(s)	398, 677, 1622, 2127, 2192, 2240, 2479
HpyCH4IV	ACGT	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 986
HpyF3I	CTNAG	8 cut(s)	420, 531, 779, 996, 1365, 1372, 1959, 2463
HpySE526I	ACGT	1 cut(s)	614
Kzo9I	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
LguI	GCTCTTC	1 cut(s)	2158
LmnI	GCTCC	5 cut(s)	871, 1125, 1950, 2385, 2475
Lsp1109I	GCAGC	8 cut(s)	54, 216, 328, 590, 959, 1425, 1964, 1967
LweI	GCATC	5 cut(s)	829, 924, 1708, 2150, 2457
MaeI	CTAG	2 cut(s)	1739, 1910
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	5 cut(s)	608, 958, 982, 2410, 2438
MalI	GATC	5 cut(s)	465, 1197, 1317, 1677, 2370
MbiI	CCGCTC	1 cut(s)	1123
MboI	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
MfeI	CAATTG	2 cut(s)	1025, 1539
MflI	RGATCY	1 cut(s)	1315
MhlI	GDGCHC	3 cut(s)	935, 1136, 1269
MlsI	TGGCCA	2 cut(s)	290, 2187
MluNI	TGGCCA	2 cut(s)	290, 2187
MlyI	GAGTC	4 cut(s)	42, 736, 1790, 1832
MmeI	TCCRAC	5 cut(s)	81, 226, 405, 1021, 1683
Mox20I	TGGCCA	2 cut(s)	290, 2187
MroXI	GAANNNNTTC	2 cut(s)	432, 1156
MscI	TGGCCA	2 cut(s)	290, 2187
MseI	TTAA	5 cut(s)	306, 327, 1353, 1398, 2033
MslI	CAYNNNNRTG	2 cut(s)	1151, 1286
Msp20I	TGGCCA	2 cut(s)	290, 2187
MspA1I	CMGCKG	2 cut(s)	581, 972
MspI	CCGG	2 cut(s)	1470, 2309
MspR9I	CCNGG	4 cut(s)	1471, 1902, 2043, 2184
MunI	CAATTG	2 cut(s)	1025, 1539
Mva1269I	GAATGC	2 cut(s)	902, 1158
MvaI	CCWGG	3 cut(s)	1902, 2043, 2184
MvnI	CGCG	2 cut(s)	279, 2157
MwoI	GCNNNNNNNGC	2 cut(s)	660, 986
NciI	CCSGG	1 cut(s)	1471
NcoI	CCATGG	1 cut(s)	2430
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
NlaIV	GGNNCC	1 cut(s)	932
NmuCI	GTSAC	2 cut(s)	982, 2410
NspI	RCATGY	1 cut(s)	625
PagI	TCATGA	1 cut(s)	1269
PceI	AGGCCT	1 cut(s)	266
PciI	ACATGT	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	2158
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	902, 1158
PdmI	GAANNNNTTC	2 cut(s)	432, 1156
PfeI	GAWTC	6 cut(s)	70, 256, 416, 794, 1706, 1763
Pfl23II	CGTACG	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	2308
PleI	GAGTC	4 cut(s)	41, 735, 1790, 1832
PpsI	GAGTC	4 cut(s)	41, 735, 1790, 1832
Ppu21I	YACGTR	1 cut(s)	615
PscI	ACATGT	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	1398
PsiI	TTATAA	2 cut(s)	1331, 1529
Psp6I	CCWGG	3 cut(s)	1900, 2041, 2182
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	3 cut(s)	1900, 2041, 2182
PspLI	CGTACG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	2 cut(s)	1114, 2180
PstI	CTGCAG	2 cut(s)	1954, 2215
PstNI	CAGNNNCTG	2 cut(s)	986, 2183
PsuI	RGATCY	1 cut(s)	1315
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	5 cut(s)	85, 104, 364, 1831, 2124
RsaNI	GTAC	5 cut(s)	84, 103, 363, 1830, 2123
RseI	CAYNNNNRTG	2 cut(s)	1151, 1286
SalI	GTCGAC	1 cut(s)	2060
SapI	GCTCTTC	1 cut(s)	2158
SaqAI	TTAA	5 cut(s)	306, 327, 1353, 1398, 2033
Sau3AI	GATC	5 cut(s)	463, 1195, 1315, 1675, 2368
Sau96I	GGNCC	2 cut(s)	1114, 2180
SchI	GAGTC	4 cut(s)	42, 736, 1790, 1832
ScrFI	CCNGG	4 cut(s)	1471, 1902, 2043, 2184
SduI	GDGCHC	3 cut(s)	935, 1136, 1269
SfaNI	GCATC	5 cut(s)	829, 924, 1708, 2150, 2457
SfcI	CTRYAG	2 cut(s)	1950, 2211
SinI	GGWCC	1 cut(s)	1114
SmiMI	CAYNNNNRTG	2 cut(s)	1151, 1286
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	7 cut(s)	7, 279, 808, 927, 970, 1123, 2197
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	2 cut(s)	1739, 1910
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	1469, 1900, 2041, 2182
StyI	CCWWGG	2 cut(s)	20, 2430
TaaI	ACNGT	7 cut(s)	398, 677, 1622, 2127, 2192, 2240, 2479
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	4 cut(s)	236, 498, 1498, 2061
TatI	WGTACW	1 cut(s)	1829
TauI	GCSGC	2 cut(s)	9, 811
TfiI	GAWTC	6 cut(s)	70, 256, 416, 794, 1706, 1763
Tru1I	TTAA	5 cut(s)	306, 327, 1353, 1398, 2033
Tru9I	TTAA	5 cut(s)	306, 327, 1353, 1398, 2033
TseFI	GTSAC	2 cut(s)	982, 2410
TseI	GCWGC	8 cut(s)	42, 229, 341, 578, 972, 1438, 1952, 1955
Tsp45I	GTSAC	2 cut(s)	982, 2410
TspGWI	ACGGA	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	1132
VpaK11BI	GGWCC	1 cut(s)	1114
VspI	ATTAAT	1 cut(s)	1398
XagI	CCTNNNNNAGG	1 cut(s)	1446
XapI	RAATTY	2 cut(s)	1425, 2318
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	744, 1649
XmiI	GTMKAC	2 cut(s)	1021, 2061
XmnI	GAANNNNTTC	2 cut(s)	432, 1156
XspI	CTAG	2 cut(s)	1739, 1910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.