Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Forward (+)

5030022 .. 5032485

Gene Structure 2464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGGGATAACAGTTACAAAACCTTTGAGCTTAATGTGAAGAAAGAAGAACCAACTCTTGTACCTCCTGCAGCAGAAACGGAGAAGGGCCTCTACTTCCTCTCAAATCTAGATCAGAACATTGCGGTCGTAGTTCGTACACTATACTACTATAAATCGGATTCAAAGGGGAATGAGGATGTTGTGGAAGTCATGAAGAAAGCCTTGTCAGATGTTCTTGTTCATTACTATCCACTGGCAGGAAGGTTAAGTATAAGCACAGAGGGGAAGCTGATAGTGGATTGCACAGGAGATGGGGCTGTGTTTGTGGAAGCTGAAGCTAACTGTGAAATGAAGGAGGTAGGAGACATTACAAAGCCGGATCCTGTGACTGACGGGAAGCTGATTTATGATGTTCCTGGTGCCAATAACATACTTGAGATTCCTCCTTTGGTTGTTCAGGTGACTAAGTTCAGATGTGGAGGATTTGTCCTTGGGTTAAGCATCAACCATTGTATGAATGATGGGATTTCTGCAATGCAATTTGTGAACTCATGGAGTGAGACTGCTAGAGGCGTGCCTCTTAAGGTTCTTCCATTTCTAGACAGAAGCATACTCAAAGCGCGAAACCCTCCAAAGATAGAGTTCCCTCACCATGAGTTTGCTCAGATAGAAGATATATCTGATACCACAAAACTTTATGAAGAAGAAGAAATGGTTTATAGGTCCTTCTGTTTTGAACCAGAGAAGCTCGAAAAGCTCAAGAAAAAGGCCATGGAAGATGGGGTTCTTGAAAAATGCACTTCATTTGTAGCACTCTCTGCCTTTGTCTGGAGAGCAAGGACCAGAGCCTTAAGGATGGTACCTGATCAGAAAACAAAGCTGCTTTTCGCTGTTGATGGACGGTCGAGATTTGAGCCAGTGATACCAAAAGGCTACTATGGAAATGCAATTGTGCTGACATATGCATTATGCAGTACAGGGGAGCTATTAGAGAATCCATTCTCATTTTCTGTAGGGCTAGTTGATAAGGCAATTCACATGGTTAGTGATAGTTATATGAGATCAGTCATAGACTACTTTGAAGTCACAAGAGCTAGGCCTTCTTTGGCAGCAACTCTTTTGATAACAACATGGTCTAGGCTTGATTTCCACACTACTGATTTCGGTTGGGGAGAGCCTGTGTTTTCGGGGCCTGTGGGTTTGCCTGAGAAGGAAGTAATCTTGTTCCTTTCTCACGGTGAAGACAGGAAAAGCATTAATGTGTTTTTGGGAATGCCAGCTTCTGCTATGAAGGTGTTTGAAGAGTTGATGCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

434

Amino Acids

48.51

Weight (kDa)

5.27

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	12 - 431	2.9e-99	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	2 cut(s)	401, 841
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	356, 369
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	4 cut(s)	63, 139, 843, 958
AfiI	CCNNNNNNNGG	2 cut(s)	239, 810
AflII	CTTAAG	2 cut(s)	563, 832
AgsI	TTSAA	5 cut(s)	165, 719, 773, 1064, 1283
AjnI	CCWGG	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	339, 536
AlwI	GGATC	2 cut(s)	356, 369
AlwNI	CAGNNNCTG	1 cut(s)	1265
AoxI	GGCC	4 cut(s)	88, 750, 1079, 1172
ApeKI	GCWGC	3 cut(s)	71, 862, 1091
AseI	ATTAAT	1 cut(s)	1239
Asp700I	GAANNNNTTC	1 cut(s)	980
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	4 cut(s)	88, 705, 822, 1172
AsuHPI	GGTGA	3 cut(s)	454, 623, 1232
AvaII	GGWCC	2 cut(s)	705, 822
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	2 cut(s)	401, 841
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbsI	GAAGAC	1 cut(s)	1230
BbvI	GCAGC	3 cut(s)	83, 849, 1103
BccI	CCATC	5 cut(s)	287, 497, 755, 832, 872
BciT130I	CCWGG	1 cut(s)	399
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	2 cut(s)	339, 536
BfaI	CTAG	6 cut(s)	110, 549, 581, 1001, 1077, 1119
BfmI	CTRYAG	2 cut(s)	69, 993
BfrI	CTTAAG	2 cut(s)	563, 832
BisI	GCNGC	3 cut(s)	72, 863, 1092
BlsI	GCNGC	3 cut(s)	73, 864, 1093
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	2 cut(s)	705, 822
BmgT120I	GGNCC	4 cut(s)	88, 705, 822, 1172
BmiI	GGNNCC	4 cut(s)	363, 403, 843, 1173
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	492, 1281
BpiI	GAAGAC	1 cut(s)	1230
BpmI	CTGGAG	1 cut(s)	832
BpuEI	CTTGAG	2 cut(s)	437, 725
BsaJI	CCNNGG	2 cut(s)	472, 753
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 1146, 1176
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 810
Bse1I	ACTGG	2 cut(s)	240, 899
Bse3DI	GCAATG	2 cut(s)	120, 522
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	472, 753
BseGI	GGATG	2 cut(s)	184, 843
BseLI	CCNNNNNNNGG	2 cut(s)	239, 810
BseMI	GCAATG	2 cut(s)	120, 522
BseMII	CTCAG	2 cut(s)	659, 1179
BseNI	ACTGG	2 cut(s)	240, 899
BseXI	GCAGC	3 cut(s)	83, 849, 1103
Bsh1236I	CGCG	1 cut(s)	604
Bsh1285I	CGRYCG	2 cut(s)	129, 887
BshFI	GGCC	4 cut(s)	90, 752, 1081, 1174
BshNI	GGYRCC	2 cut(s)	401, 841
BsiEI	CGRYCG	2 cut(s)	129, 887
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	239, 810
BsmAI	GTCTC	2 cut(s)	339, 536
BsmI	GAATGC	1 cut(s)	1260
BsnI	GGCC	4 cut(s)	90, 752, 1081, 1174
Bsp143I	GATC	4 cut(s)	112, 361, 847, 1043
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	4 cut(s)	90, 752, 1081, 1174
BspCNI	CTCAG	2 cut(s)	658, 1180
BspFNI	CGCG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	363, 403, 843, 1173
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	2 cut(s)	356, 369
BspT107I	GGYRCC	2 cut(s)	401, 841
BspTI	CTTAAG	2 cut(s)	563, 832
BsrDI	GCAATG	2 cut(s)	120, 522
BsrI	ACTGG	2 cut(s)	240, 899
BssECI	CCNNGG	2 cut(s)	472, 753
BssMI	GATC	4 cut(s)	112, 361, 847, 1043
BssT1I	CCWWGG	2 cut(s)	472, 753
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	4 cut(s)	14, 326, 885, 1220
Bst6I	CTCTTC	1 cut(s)	1278
BstAFI	CTTAAG	2 cut(s)	563, 832
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	557, 1260
BstDEI	CTNAG	3 cut(s)	447, 645, 1188
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	184, 843
BstFNI	CGCG	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	115, 364, 850, 1046
BstMAI	GTCTC	2 cut(s)	339, 536
BstMBI	GATC	4 cut(s)	112, 361, 847, 1043
BstMCI	CGRYCG	2 cut(s)	129, 887
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 800
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	69, 993
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	83, 849, 1103
BstV2I	GAAGAC	1 cut(s)	1230
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	90, 752, 1081, 1174
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	184, 843
BtsIMutI	CAGTG	2 cut(s)	233, 906
Cac8I	GCNNGC	2 cut(s)	557, 1260
CaiI	CAGNNNCTG	1 cut(s)	1265
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	4 cut(s)	88, 705, 822, 1172
Csp6I	GTAC	4 cut(s)	62, 138, 842, 957
CviAII	CATG	6 cut(s)	193, 534, 635, 754, 1021, 1113
CviQI	GTAC	4 cut(s)	62, 138, 842, 957
DdeI	CTNAG	3 cut(s)	447, 645, 1188
DpnI	GATC	4 cut(s)	114, 363, 849, 1045
DpnII	GATC	4 cut(s)	112, 361, 847, 1043
Eam1104I	CTCTTC	1 cut(s)	1278
EarI	CTCTTC	1 cut(s)	1278
Eco130I	CCWWGG	2 cut(s)	472, 753
Eco147I	AGGCCT	1 cut(s)	1081
Eco47I	GGWCC	2 cut(s)	705, 822
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	3 cut(s)	88, 705, 1172
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	472, 753
EcoT22I	ATGCAT	1 cut(s)	949
ErhI	CCWWGG	2 cut(s)	472, 753
FaeI	CATG	6 cut(s)	196, 537, 638, 757, 1024, 1116
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	6 cut(s)	192, 533, 634, 753, 1020, 1112
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	1 cut(s)	847
Fnu4HI	GCNGC	3 cut(s)	72, 863, 1092
FokI	GGATG	2 cut(s)	191, 850
Fsp4HI	GCNGC	3 cut(s)	72, 863, 1092
FspBI	CTAG	6 cut(s)	110, 549, 581, 1001, 1077, 1119
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	3 cut(s)	72, 863, 1092
GsuI	CTGGAG	1 cut(s)	832
HaeIII	GGCC	4 cut(s)	90, 752, 1081, 1174
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	196, 537, 638, 757, 1024, 1116
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	3 cut(s)	161, 421, 976
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	454, 623, 1232
Hpy166II	GTNNAC	2 cut(s)	140, 529
Hpy188I	TCNGA	7 cut(s)	117, 160, 211, 455, 648, 664, 852
Hpy188III	TCNNGA	7 cut(s)	110, 193, 581, 742, 770, 811, 888
Hpy8I	GTNNAC	2 cut(s)	140, 529
HpyAV	CCTTC	7 cut(s)	79, 237, 328, 718, 1092, 1186, 1267
HpyCH4III	ACNGT	4 cut(s)	14, 326, 885, 1220
HpyCH4V	TGCA	9 cut(s)	71, 285, 515, 520, 780, 929, 947, 954, 1294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 800
HpyF3I	CTNAG	3 cut(s)	447, 645, 1188
Hsp92II	CATG	6 cut(s)	196, 537, 638, 757, 1024, 1116
HspAI	GCGC	1 cut(s)	602
KpnI	GGTACC	1 cut(s)	845
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	112, 361, 847, 1043
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	3 cut(s)	83, 849, 1103
LweI	GCATC	2 cut(s)	492, 1281
MaeI	CTAG	6 cut(s)	110, 549, 581, 1001, 1077, 1119
MaeIII	GTNAC	4 cut(s)	14, 367, 442, 1066
MalI	GATC	4 cut(s)	114, 363, 849, 1045
MboI	GATC	4 cut(s)	112, 361, 847, 1043
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	3 cut(s)	521, 930, 1014
Mph1103I	ATGCAT	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	6 cut(s)	33, 248, 479, 564, 833, 1239
MslI	CAYNNNNRTG	1 cut(s)	1241
MspCI	CTTAAG	2 cut(s)	563, 832
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	1260
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	2 cut(s)	736, 800
NcoI	CCATGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	4 cut(s)	112, 361, 847, 1043
NlaIII	CATG	6 cut(s)	196, 537, 638, 757, 1024, 1116
NlaIV	GGNNCC	4 cut(s)	363, 403, 843, 1173
NmuCI	GTSAC	3 cut(s)	367, 442, 1066
NsiI	ATGCAT	1 cut(s)	949
PagI	TCATGA	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	1260
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	3 cut(s)	161, 421, 976
PkrI	GCNGC	3 cut(s)	73, 864, 1093
PpuMI	RGGWCCY	1 cut(s)	705
PshBI	ATTAAT	1 cut(s)	1239
Psp5II	RGGWCCY	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	4 cut(s)	363, 403, 843, 1173
PspPI	GGNCC	4 cut(s)	88, 705, 822, 1172
PspPPI	RGGWCCY	1 cut(s)	705
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	4 cut(s)	63, 139, 843, 958
RsaNI	GTAC	4 cut(s)	62, 138, 842, 957
RseI	CAYNNNNRTG	1 cut(s)	1241
SaqAI	TTAA	6 cut(s)	33, 248, 479, 564, 833, 1239
SatI	GCNGC	3 cut(s)	72, 863, 1092
Sau3AI	GATC	4 cut(s)	112, 361, 847, 1043
Sau96I	GGNCC	4 cut(s)	88, 705, 822, 1172
ScrFI	CCNGG	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	492, 1281
SfcI	CTRYAG	2 cut(s)	69, 993
SinI	GGWCC	2 cut(s)	705, 822
SmiMI	CAYNNNNRTG	1 cut(s)	1241
SmlI	CTYRAG	4 cut(s)	416, 563, 740, 832
SmoI	CTYRAG	4 cut(s)	416, 563, 740, 832
Sse9I	AATT	3 cut(s)	521, 930, 1014
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	6 cut(s)	110, 549, 581, 1001, 1077, 1119
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	472, 753
TaaI	ACNGT	4 cut(s)	14, 326, 885, 1220
TaqI	TCGA	2 cut(s)	732, 887
TasI	AATT	3 cut(s)	521, 930, 1014
TatI	WGTACW	1 cut(s)	956
TfiI	GAWTC	3 cut(s)	161, 421, 976
Tru1I	TTAA	6 cut(s)	33, 248, 479, 564, 833, 1239
Tru9I	TTAA	6 cut(s)	33, 248, 479, 564, 833, 1239
TscAI	CASTG	2 cut(s)	240, 906
TseFI	GTSAC	3 cut(s)	367, 442, 1066
TseI	GCWGC	3 cut(s)	71, 862, 1091
Tsp45I	GTSAC	3 cut(s)	367, 442, 1066
TspDTI	ATGAA	7 cut(s)	209, 212, 347, 512, 696, 774, 1286
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	240, 906
Vha464I	CTTAAG	2 cut(s)	563, 832
VpaK11BI	GGWCC	2 cut(s)	705, 822
VspI	ATTAAT	1 cut(s)	1239
XbaI	TCTAGA	2 cut(s)	109, 580
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	6 cut(s)	110, 549, 581, 1001, 1077, 1119
Zsp2I	ATGCAT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.