Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Forward (+)

58748016 .. 58752315

Gene Structure 4300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGGGATAACAATTACAAAACCTTTGAGTTTAAGCTTATTGTGAAGAAAGAAGAACCAACTCTTGTACCTCCTGCAGCAGAAACGGAGAAGGGCCTCTACTTCCTCTCAAATCTAGATCAGAACATTGCAGTCATAGTTCGTACTCTTTACTATTATAAATCAGATTCAAAAGGGAATGAGGACGTTGTGGAAGTCATGAAGAAAGCCTTCTCAAAGGTACTTGTTCATTACTATCCACTGGCAGGAAGGTTAAGTATAAGCACAGAGGGGAAGCTGATAGTGGATTGTACAGGAGATGGAGCTGTGTTTGTGGAAGCGGAAGCTAACTGTGAAATGGAGGAGGTAGGAGACATTACAAAGCCTGATCCTGTGACTCTTGGGAAGCTGATTTATGATGCTCCTGGTGCCAAGAACATACTTGAGATTCCTCTTTTGGTTGCTCAGGTGACAAGGTTCAAATGTGGAGGTTTTGTCCTTGGGTTATGTATGAACCATTGTATGGCTGATGGGATTTCTGCAGTGGAATTTGTGAACTCATGGGGTGAGACTGCTAGAGGCTTGTCTCTTAATGTTCCCCCATTTCTAGACAGAAGCATACTCAAAGCCCGAAACCCACCAAAGATGGAGTTCCCTCACCATGAATTTGCTCAGATAGAAGACATATCTGATATCAACAAACTTTATGAAGAAGAAGAAATGGTTTATAGTTCCTTTTGTTTTGAACCAGAGAAGCTTGAAAAGCTCAAGAAAATGGCCATGGAAGATGGGGTTCTTGAAAAATGTACAACATTTGTAGCACTCTCTGCCTTTGTCTGGAGAGCAAGGACTCGGGCCTTGAGGATGGTACCAGATCAGAAAACAAAGCTACTTTTTGCTGTTGATGTACGGTCAAGATTTGAGCCACCGATACCAAAAGGATACTTTGGAAATGCAATTGTGCTGACAAATGCATTATGCAGTACAGGGGAGCTATTAGAGAACCCATTGTCATTTGCTGTTGGGCTAGTTGATAAGGCAATTCACATGGTTAATGACAGTTATATGAGATCAGTCATAGACTACTTTGAAATCACAAGAGCTAGGCCTTCTTTGGCAGCAACGCTTTTGATAACAACATGGTCTAGACTTTCTTTCCACACTGCTGATTTCGGTTGGGGAGATGCTGTGTTTTCAGGGCCAGTGGGTTTGCCTGAGAAGGAAGTAAGCTTGTTCCTTCCTCATGGGAAAGACAGGAAAAGCATTAATGTGTTTTTGGGAATGCCAGCTTCTGCTATGAAGGTGTTTGAAGAGTTGATGCAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

435

Amino Acids

48.58

Weight (kDa)

5.41

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	15 - 433	3.5e-99	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
Acc65I	GGTACC	1 cut(s)	847
AccB1I	GGYRCC	2 cut(s)	407, 847
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	527, 644
AfaI	GTAC	8 cut(s)	69, 145, 222, 292, 787, 849, 888, 964
AfiI	CCNNNNNNNGG	3 cut(s)	245, 502, 816
AgsI	TTSAA	7 cut(s)	171, 460, 725, 740, 779, 1070, 1289
AjnI	CCWGG	1 cut(s)	403
Alw26I	GTCTC	3 cut(s)	345, 542, 570
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	1271
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	5 cut(s)	94, 756, 834, 1085, 1178
ApeKI	GCWGC	2 cut(s)	77, 1097
ApoI	RAATTY	2 cut(s)	527, 644
AseI	ATTAAT	1 cut(s)	1245
Asp700I	GAANNNNTTC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	847
AspS9I	GGNCC	3 cut(s)	94, 834, 1178
AsuHPI	GGTGA	3 cut(s)	460, 557, 629
AvaI	CYCGRG	1 cut(s)	831
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BalI	TGGCCA	1 cut(s)	758
BanI	GGYRCC	2 cut(s)	407, 847
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	89, 1109
BccI	CCATC	5 cut(s)	293, 503, 619, 761, 838
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	914
BcoDI	GTCTC	3 cut(s)	345, 542, 570
BfaI	CTAG	6 cut(s)	116, 555, 587, 1007, 1083, 1125
BfmI	CTRYAG	2 cut(s)	75, 519
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	2 cut(s)	78, 1098
BlsI	GCNGC	2 cut(s)	79, 1099
Bme1390I	CCNGG	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	3 cut(s)	94, 834, 1178
BmiI	GGNNCC	2 cut(s)	409, 849
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	3 cut(s)	388, 1153, 1287
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	838
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	3 cut(s)	443, 731, 859
BsaJI	CCNNGG	2 cut(s)	478, 759
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 1152, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 502, 816
Bse1I	ACTGG	2 cut(s)	246, 1181
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	478, 759
BseGI	GGATG	1 cut(s)	849
BseLI	CCNNNNNNNGG	3 cut(s)	245, 502, 816
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	3 cut(s)	458, 665, 1185
BseNI	ACTGG	2 cut(s)	246, 1181
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	89, 1109
BshFI	GGCC	5 cut(s)	96, 758, 836, 1087, 1180
BshNI	GGYRCC	2 cut(s)	407, 847
BsiHKCI	CYCGRG	1 cut(s)	831
BslI	CCNNNNNNNGG	3 cut(s)	245, 502, 816
BsmAI	GTCTC	3 cut(s)	345, 542, 570
BsmI	GAATGC	1 cut(s)	1266
BsnI	GGCC	5 cut(s)	96, 758, 836, 1087, 1180
BsoBI	CYCGRG	1 cut(s)	831
Bsp1407I	TGTACA	2 cut(s)	290, 785
Bsp143I	GATC	4 cut(s)	118, 367, 853, 1049
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	5 cut(s)	96, 758, 836, 1087, 1180
BspCNI	CTCAG	3 cut(s)	457, 664, 1186
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	409, 849
BspMAI	CTGCAG	2 cut(s)	79, 523
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	407, 847
BsrDI	GCAATG	1 cut(s)	126
BsrGI	TGTACA	2 cut(s)	290, 785
BsrI	ACTGG	2 cut(s)	246, 1181
BssECI	CCNNGG	2 cut(s)	478, 759
BssMI	GATC	4 cut(s)	118, 367, 853, 1049
BssT1I	CCWWGG	2 cut(s)	478, 759
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	332, 891, 1040
Bst6I	CTCTTC	1 cut(s)	1284
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstAUI	TGTACA	2 cut(s)	290, 785
BstC8I	GCNNGC	1 cut(s)	1266
BstDEI	CTNAG	3 cut(s)	444, 651, 1194
BstDSI	CCRYGG	1 cut(s)	759
BstF5I	GGATG	1 cut(s)	849
BstKTI	GATC	4 cut(s)	121, 370, 856, 1052
BstMAI	GTCTC	3 cut(s)	345, 542, 570
BstMBI	GATC	4 cut(s)	118, 367, 853, 1049
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 742, 806
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	75, 519
BstV1I	GCAGC	2 cut(s)	89, 1109
BstV2I	GAAGAC	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	5 cut(s)	96, 758, 836, 1087, 1180
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	849
BtsI	GCAGTG	2 cut(s)	528, 1140
BtsIMutI	CAGTG	4 cut(s)	239, 528, 1140, 1188
Cac8I	GCNNGC	1 cut(s)	1266
CaiI	CAGNNNCTG	1 cut(s)	1271
CciI	TCATGA	1 cut(s)	198
Cfr13I	GGNCC	3 cut(s)	94, 834, 1178
Csp6I	GTAC	8 cut(s)	68, 144, 221, 291, 786, 848, 887, 963
CviAII	CATG	7 cut(s)	199, 540, 641, 760, 1027, 1119, 1223
CviQI	GTAC	8 cut(s)	68, 144, 221, 291, 786, 848, 887, 963
DdeI	CTNAG	3 cut(s)	444, 651, 1194
DpnI	GATC	4 cut(s)	120, 369, 855, 1051
DpnII	GATC	4 cut(s)	118, 367, 853, 1049
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	1284
EarI	CTCTTC	1 cut(s)	1284
Eco130I	CCWWGG	2 cut(s)	478, 759
Eco147I	AGGCCT	1 cut(s)	1087
Eco32I	GATATC	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	478, 759
EcoT22I	ATGCAT	1 cut(s)	955
ErhI	CCWWGG	2 cut(s)	478, 759
FaeI	CATG	7 cut(s)	202, 543, 644, 763, 1030, 1122, 1226
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	7 cut(s)	198, 539, 640, 759, 1026, 1118, 1222
Fnu4HI	GCNGC	2 cut(s)	78, 1098
FokI	GGATG	1 cut(s)	856
Fsp4HI	GCNGC	2 cut(s)	78, 1098
FspBI	CTAG	6 cut(s)	116, 555, 587, 1007, 1083, 1125
GluI	GCNGC	2 cut(s)	78, 1098
GsuI	CTGGAG	1 cut(s)	838
HaeIII	GGCC	5 cut(s)	96, 758, 836, 1087, 1180
Hin1II	CATG	7 cut(s)	202, 543, 644, 763, 1030, 1122, 1226
HindIII	AAGCTT	3 cut(s)	35, 734, 1207
HinfI	GANTC	4 cut(s)	167, 376, 427, 829
HphI	GGTGA	3 cut(s)	460, 557, 629
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	5 cut(s)	123, 166, 654, 670, 858
Hpy188III	TCNNGA	8 cut(s)	116, 199, 587, 748, 776, 817, 894, 1125
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	7 cut(s)	85, 220, 243, 1098, 1192, 1226, 1273
HpyCH4III	ACNGT	3 cut(s)	332, 891, 1040
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	77, 131, 521, 935, 953, 960, 1300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 742, 806
HpyF3I	CTNAG	3 cut(s)	444, 651, 1194
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	202, 543, 644, 763, 1030, 1122, 1226
KpnI	GGTACC	1 cut(s)	851
Kzo9I	GATC	4 cut(s)	118, 367, 853, 1049
LmnI	GCTCC	3 cut(s)	302, 406, 970
Lsp1109I	GCAGC	2 cut(s)	89, 1109
LweI	GCATC	3 cut(s)	388, 1153, 1287
MaeI	CTAG	6 cut(s)	116, 555, 587, 1007, 1083, 1125
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	373, 448
MalI	GATC	4 cut(s)	120, 369, 855, 1051
MboI	GATC	4 cut(s)	118, 367, 853, 1049
MboII	GAAGA	9 cut(s)	58, 65, 214, 671, 701, 704, 707, 776, 1301
MfeI	CAATTG	1 cut(s)	936
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	5 cut(s)	13, 527, 644, 936, 1020
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	2 cut(s)	370, 823
Mox20I	TGGCCA	1 cut(s)	758
Mph1103I	ATGCAT	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	5 cut(s)	33, 254, 570, 1032, 1245
MslI	CAYNNNNRTG	1 cut(s)	1247
Msp20I	TGGCCA	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	1 cut(s)	1266
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	407, 742, 806
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	4 cut(s)	118, 367, 853, 1049
NlaIII	CATG	7 cut(s)	202, 543, 644, 763, 1030, 1122, 1226
NlaIV	GGNNCC	2 cut(s)	409, 849
NmuCI	GTSAC	2 cut(s)	373, 448
NsiI	ATGCAT	1 cut(s)	955
PagI	TCATGA	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	1087
PctI	GAATGC	1 cut(s)	1266
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	167, 427
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	79, 1099
PleI	GAGTC	2 cut(s)	370, 823
PpsI	GAGTC	2 cut(s)	370, 823
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	409, 849
PspPI	GGNCC	3 cut(s)	94, 834, 1178
PstI	CTGCAG	2 cut(s)	79, 523
PstNI	CAGNNNCTG	1 cut(s)	1271
RsaI	GTAC	8 cut(s)	69, 145, 222, 292, 787, 849, 888, 964
RsaNI	GTAC	8 cut(s)	68, 144, 221, 291, 786, 848, 887, 963
RseI	CAYNNNNRTG	1 cut(s)	1247
SaqAI	TTAA	5 cut(s)	33, 254, 570, 1032, 1245
SatI	GCNGC	2 cut(s)	78, 1098
Sau3AI	GATC	4 cut(s)	118, 367, 853, 1049
Sau96I	GGNCC	3 cut(s)	94, 834, 1178
SchI	GAGTC	2 cut(s)	370, 823
ScrFI	CCNGG	1 cut(s)	405
SfaNI	GCATC	3 cut(s)	388, 1153, 1287
SfcI	CTRYAG	2 cut(s)	75, 519
SmiMI	CAYNNNNRTG	1 cut(s)	1247
SmlI	CTYRAG	3 cut(s)	422, 746, 838
SmoI	CTYRAG	3 cut(s)	422, 746, 838
Sse9I	AATT	5 cut(s)	13, 527, 644, 936, 1020
SseBI	AGGCCT	1 cut(s)	1087
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	6 cut(s)	116, 555, 587, 1007, 1083, 1125
StuI	AGGCCT	1 cut(s)	1087
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	478, 759
TaaI	ACNGT	3 cut(s)	332, 891, 1040
TaiI	ACGT	1 cut(s)	189
TasI	AATT	5 cut(s)	13, 527, 644, 936, 1020
TatI	WGTACW	3 cut(s)	290, 785, 962
TfiI	GAWTC	2 cut(s)	167, 427
Tru1I	TTAA	5 cut(s)	33, 254, 570, 1032, 1245
Tru9I	TTAA	5 cut(s)	33, 254, 570, 1032, 1245
TscAI	CASTG	4 cut(s)	246, 528, 1147, 1188
TseFI	GTSAC	2 cut(s)	373, 448
TseI	GCWGC	2 cut(s)	77, 1097
Tsp45I	GTSAC	2 cut(s)	373, 448
TspDTI	ATGAA	6 cut(s)	215, 218, 506, 657, 702, 1292
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	4 cut(s)	246, 528, 1147, 1188
Van91I	CCANNNNNTGG	1 cut(s)	502
VspI	ATTAAT	1 cut(s)	1245
XapI	RAATTY	2 cut(s)	527, 644
XbaI	TCTAGA	3 cut(s)	115, 586, 1124
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	6 cut(s)	116, 555, 587, 1007, 1083, 1125
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.