Rw2G054840

Omega-hydroxypalmitate O-feruloyl

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
82434495 .. 82435932
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054840.1

Sequence Viewer

Length: 1344 bp
ATGGTTCAGGTTGTGGAAGCTGGAGATTCTGCTGCAATGAACAACTCCAGTGGGAATGTGTTCCAACTCAAAGTGAAGCAAGGAGAGCCAACTCTGGTTTCCCCTGCAGAAGAAACAGACAAGGGTTTGTACTTCCTCTCTAACCTCGACCAAAACATTGCGGTCACTGTTCGAACTATTTATTGTTTCAAGTCAGATGAGAAAGATAATAGCAAGGCAGGGGAAGTGATCAAGAATGCTCTCAAAAAGGTTCTTGTCCACTATTACCCCCTTGCTGGGCGCCTGTCAATCAGCTCGGAAGGAAAGCTCATTGTAGATTGCACCGGAGAAGGAGCTGTTTTCGTTGAGGCAGAAGCAGATTGTACAATAGAAGATATTGGAGACATAACAAAACCTGATCCGGAGACTCTTGGAAAGCTGGTCTATGACATTCCTGGTGCCAAGAACATACTAGAAGTGCCTCCTCTTGTGGCCCAGGTGACAAAATTCAAATGCGGAGGGTTTTCTCTTGGCCTGTGCATGAACCACTGTATGTTTGATGGCATTGGGGCTATGGAGTTTGTGAACTCATGGGGAGAGACTGCGAGAGGTTTGCCATTAACAGTTGTTCCGTTCATAGACAGAAGCATACTCAAAGCACGAAACCCACCTAAGATAGAGCACCTGCACCAAGAGTTCTCTGAGATTATTGATGGCAATTCTAGCCTTAACTCTTCTGAAGTTGATGAAGACAAGATGCTGTATAGGTCCTTCTGTTTTGACACTGAGAAGCTCGAAAAGCTGAAAACTAAAGCCAGGGAAGACGGCGCTCTTGACAAGTGCTCTACATTTGAAGCCCTCTCAGCATTTGTGTGGAAAGCTCGGACTAGAGCCCTGAGACTCTTGCCTGAACAACAAATCAAGCTCTTGTTTGCTGTTGATGGGAGGCATAAGTTCAACCCACCACTCCCAAACGGGTACTTTGGGAATGGCATTGTGTTGACACATGCAATCTGTGAAGCAGGTGATCTGCTGGAAAAGCCACTGTCACATGCGGTTGGGCTTGTTCAAGATGCCATCAAGATGGTCACTGACAGTTACATGAGATCAGCCATTGACTATTTCGAAGCAACGAGAGCTAGGCCTTCTTTGTCCTCCACTCTTTTGATCACAACTTGGTCTCGGCTTTCATTTTACACCACTGACTTTGGTTGGGGAGAGCCTATACTCTCAGGTCCAGTGGCTTTGCCGGAGAAGGAGGTGATCTTATTCCTGTCTCATGGGACAGAGAAGAAAAGCATTAACGTGCTTTTGGGTCTTCCAGCTTCTGCCATGAAGGTCTTTCAAGAACTGATGAATATGTAG

Protein Analysis

447

Amino Acids

49.17

Weight (kDa)

5.38

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 24 - 445 1.1e-98 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 672, 992
Acc36I ACCTGC 2 cut(s) 672, 992
AccB1I GGYRCC 2 cut(s) 279, 437
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 3 cut(s) 161, 495, 1034
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 738
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 3 cut(s) 131, 364, 959
AfiI CCNNNNNNNGG 2 cut(s) 275, 276
AgsI TTSAA 6 cut(s) 190, 490, 833, 937, 1049, 1325
AjnI CCWGG 3 cut(s) 433, 474, 794
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
Alw21I GWGCWC 2 cut(s) 663, 824
Alw26I GTCTC 6 cut(s) 375, 398, 572, 871, 1164, 1260
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 1307
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 3 cut(s) 471, 511, 1121
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 2 cut(s) 282, 809
AspS9I GGNCC 3 cut(s) 472, 747, 1214
AsuHPI GGTGA 3 cut(s) 490, 1016, 1252
AsuII TTCGAA 2 cut(s) 172, 1104
AvaII GGWCC 2 cut(s) 747, 1214
BanI GGYRCC 2 cut(s) 279, 437
BanII GRGCYC 1 cut(s) 874
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 3 cut(s) 735, 807, 1289
Bbv12I GWGCWC 2 cut(s) 663, 824
BbvI GCAGC 1 cut(s) 19
BccI CCATC 5 cut(s) 533, 686, 914, 1057, 1064
BceAI ACGGC 1 cut(s) 820
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 3 cut(s) 435, 476, 796
BclI TGATCA 2 cut(s) 228, 1146
BcoDI GTCTC 6 cut(s) 375, 398, 572, 871, 1164, 1260
BfaI CTAG 4 cut(s) 452, 702, 867, 1119
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 2 cut(s) 283, 810
BfuAI ACCTGC 2 cut(s) 672, 992
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 3 cut(s) 435, 476, 796
Bme18I GGWCC 2 cut(s) 747, 1214
BmgT120I GGNCC 3 cut(s) 472, 747, 1214
BmiI GGNNCC 2 cut(s) 281, 439
BmrFI CCNGG 3 cut(s) 435, 476, 796
BmsI GCATC 2 cut(s) 726, 1042
BpiI GAAGAC 3 cut(s) 735, 807, 1289
BpmI CTGGAG 2 cut(s) 31, 42
Bpu14I TTCGAA 2 cut(s) 172, 1104
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 1164
BsaJI CCNNGG 2 cut(s) 474, 795
BsaWI WCCGGW 2 cut(s) 323, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 276
Bse1I ACTGG 2 cut(s) 48, 1217
Bse3DI GCAATG 2 cut(s) 42, 156
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 3 cut(s) 435, 476, 796
BseDI CCNNGG 2 cut(s) 474, 795
BseLI CCNNNNNNNGG 2 cut(s) 275, 276
BseMI GCAATG 2 cut(s) 42, 156
BseMII CTCAG 5 cut(s) 672, 756, 855, 866, 1224
BseNI ACTGG 2 cut(s) 48, 1217
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 650
BshFI GGCC 3 cut(s) 473, 513, 1123
BshNI GGYRCC 2 cut(s) 279, 437
BsiHKAI GWGCWC 2 cut(s) 663, 824
BsiSI CCGG 3 cut(s) 324, 401, 1229
BslFI GGGAC 1 cut(s) 1276
BslI CCNNNNNNNGG 2 cut(s) 275, 276
BsmAI GTCTC 6 cut(s) 375, 398, 572, 871, 1164, 1260
BsmFI GGGAC 1 cut(s) 1276
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 3 cut(s) 473, 513, 1123
Bso31I GGTCTC 1 cut(s) 1164
Bsp119I TTCGAA 2 cut(s) 172, 1104
Bsp1286I GDGCHC 3 cut(s) 663, 824, 874
Bsp13I TCCGGA 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
BspACI CCGC 3 cut(s) 161, 495, 1034
BspANI GGCC 3 cut(s) 473, 513, 1123
BspCNI CTCAG 5 cut(s) 673, 757, 854, 867, 1223
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 281, 439
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 672, 992
BspPI GGATC 1 cut(s) 392
BspT104I TTCGAA 2 cut(s) 172, 1104
BspT107I GGYRCC 2 cut(s) 279, 437
BspTNI GGTCTC 1 cut(s) 1164
BsrDI GCAATG 2 cut(s) 42, 156
BsrGI TGTACA 1 cut(s) 362
BsrI ACTGG 2 cut(s) 48, 1217
BssECI CCNNGG 2 cut(s) 474, 795
BssMI GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
BssNI GRCGYC 1 cut(s) 280
Bst2UI CCWGG 3 cut(s) 435, 476, 796
Bst4CI ACNGT 5 cut(s) 169, 530, 604, 1026, 1076
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 362
BstBI TTCGAA 2 cut(s) 172, 1104
BstDEI CTNAG 6 cut(s) 651, 681, 765, 841, 875, 1210
BstH2I RGCGCY 2 cut(s) 283, 810
BstHHI GCGC 2 cut(s) 282, 809
BstKTI GATC 6 cut(s) 231, 400, 1009, 1088, 1149, 1245
BstMAI GTCTC 6 cut(s) 375, 398, 572, 871, 1164, 1260
BstMBI GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
BstMWI GCNNNNNNNGC 6 cut(s) 85, 702, 778, 842, 1018, 1115
BstNI CCWGG 3 cut(s) 435, 476, 796
BstNSI RCATGY 2 cut(s) 989, 1034
BstSCI CCNGG 3 cut(s) 433, 474, 794
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 3 cut(s) 735, 807, 1289
BstXI CCANNNNNNTGG 1 cut(s) 1063
BsuRI GGCC 3 cut(s) 473, 513, 1123
BtsIMutI CAGTG 8 cut(s) 55, 165, 526, 762, 1022, 1068, 1179, 1224
BveI ACCTGC 2 cut(s) 672, 992
CaiI CAGNNNCTG 1 cut(s) 1307
CfoI GCGC 2 cut(s) 282, 809
Cfr13I GGNCC 3 cut(s) 472, 747, 1214
Csp6I GTAC 3 cut(s) 130, 363, 958
CspCI CAANNNNNGTGG 4 cut(s) 31, 66, 1168, 1203
CviAII CATG 7 cut(s) 520, 570, 986, 1031, 1081, 1259, 1312
CviQI GTAC 3 cut(s) 130, 363, 958
DdeI CTNAG 6 cut(s) 651, 681, 765, 841, 875, 1210
DinI GGCGCC 1 cut(s) 281
DpnI GATC 6 cut(s) 230, 399, 1008, 1087, 1148, 1244
DpnII GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
Eco147I AGGCCT 1 cut(s) 1123
Eco24I GRGCYC 1 cut(s) 874
Eco31I GGTCTC 1 cut(s) 1164
Eco47I GGWCC 2 cut(s) 747, 1214
Eco57I CTGAAG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 433, 474, 794
EcoT38I GRGCYC 1 cut(s) 874
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
FaeI CATG 7 cut(s) 523, 573, 989, 1034, 1084, 1262, 1315
FaqI GGGAC 1 cut(s) 1276
FatI CATG 7 cut(s) 519, 569, 985, 1030, 1080, 1258, 1311
FbaI TGATCA 2 cut(s) 228, 1146
Fnu4HI GCNGC 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 4 cut(s) 452, 702, 867, 1119
GlaI GCGC 2 cut(s) 281, 808
GluI GCNGC 1 cut(s) 33
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 2 cut(s) 31, 42
HaeII RGCGCY 2 cut(s) 283, 810
HaeIII GGCC 3 cut(s) 473, 513, 1123
HapII CCGG 3 cut(s) 324, 401, 1229
HhaI GCGC 2 cut(s) 282, 809
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 7 cut(s) 523, 573, 989, 1034, 1084, 1262, 1315
Hin6I GCGC 2 cut(s) 280, 807
HinP1I GCGC 2 cut(s) 280, 807
HincII GTYRAC 1 cut(s) 981
HindII GTYRAC 1 cut(s) 981
HinfI GANTC 3 cut(s) 26, 406, 879
HpaII CCGG 3 cut(s) 324, 401, 1229
HphI GGTGA 3 cut(s) 490, 1016, 1252
Hpy166II GTNNAC 3 cut(s) 259, 565, 981
Hpy188I TCNGA 5 cut(s) 196, 298, 682, 718, 864
Hpy188III TCNNGA 6 cut(s) 232, 401, 812, 1049, 1060, 1325
Hpy8I GTNNAC 3 cut(s) 259, 565, 981
HpyAV CCTTC 6 cut(s) 293, 323, 760, 1134, 1228, 1309
HpyCH4III ACNGT 5 cut(s) 169, 530, 604, 1026, 1076
HpyCH4IV ACGT 1 cut(s) 1284
HpyCH4V TGCA 6 cut(s) 35, 107, 321, 519, 667, 989
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 702, 778, 842, 1018, 1115
HpyF3I CTNAG 6 cut(s) 651, 681, 765, 841, 875, 1210
HpySE526I ACGT 1 cut(s) 1284
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 7 cut(s) 523, 573, 989, 1034, 1084, 1262, 1315
HspAI GCGC 2 cut(s) 280, 807
KasI GGCGCC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 228, 1146
Kzo9I GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 2 cut(s) 726, 1042
MaeI CTAG 4 cut(s) 452, 702, 867, 1119
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 5 cut(s) 163, 478, 1026, 1066, 1076
MalI GATC 6 cut(s) 230, 399, 1008, 1087, 1148, 1244
MboI GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
MboII GAAGA 7 cut(s) 122, 383, 705, 740, 812, 1282, 1289
MhlI GDGCHC 3 cut(s) 663, 824, 874
MluCI AATT 2 cut(s) 485, 697
Mly113I GGCGCC 1 cut(s) 280
MlyI GAGTC 2 cut(s) 400, 873
MmeI TCCRAC 1 cut(s) 88
MroI TCCGGA 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 599, 708, 1281
MslI CAYNNNNRTG 3 cut(s) 850, 1061, 1283
MspI CCGG 3 cut(s) 324, 401, 1229
MspR9I CCNGG 3 cut(s) 435, 476, 796
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 3 cut(s) 435, 476, 796
MwoI GCNNNNNNNGC 6 cut(s) 85, 702, 778, 842, 1018, 1115
NarI GGCGCC 1 cut(s) 280
NdeII GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
NlaIII CATG 7 cut(s) 523, 573, 989, 1034, 1084, 1262, 1315
NlaIV GGNNCC 2 cut(s) 281, 439
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 4 cut(s) 163, 478, 1026, 1066
NspI RCATGY 2 cut(s) 989, 1034
NspV TTCGAA 2 cut(s) 172, 1104
PaqCI CACCTGC 2 cut(s) 672, 992
PceI AGGCCT 1 cut(s) 1123
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 2 cut(s) 400, 873
PluTI GGCGCC 1 cut(s) 283
PpsI GAGTC 2 cut(s) 400, 873
PpuMI RGGWCCY 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 747
Psp6I CCWGG 3 cut(s) 433, 474, 794
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 3 cut(s) 433, 474, 794
PspN4I GGNNCC 2 cut(s) 281, 439
PspPI GGNCC 3 cut(s) 472, 747, 1214
PspPPI RGGWCCY 1 cut(s) 747
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 1307
RsaI GTAC 3 cut(s) 131, 364, 959
RsaNI GTAC 3 cut(s) 130, 363, 958
RseI CAYNNNNRTG 3 cut(s) 850, 1061, 1283
SaqAI TTAA 3 cut(s) 599, 708, 1281
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 6 cut(s) 228, 397, 1006, 1085, 1146, 1242
Sau96I GGNCC 3 cut(s) 472, 747, 1214
SchI GAGTC 2 cut(s) 400, 873
ScrFI CCNGG 3 cut(s) 435, 476, 796
SduI GDGCHC 3 cut(s) 663, 824, 874
SfaNI GCATC 2 cut(s) 726, 1042
SfcI CTRYAG 1 cut(s) 105
SfoI GGCGCC 1 cut(s) 281
SfuI TTCGAA 2 cut(s) 172, 1104
SinI GGWCC 2 cut(s) 747, 1214
SmiMI CAYNNNNRTG 3 cut(s) 850, 1061, 1283
Sse9I AATT 2 cut(s) 485, 697
SseBI AGGCCT 1 cut(s) 1123
SsiI CCGC 3 cut(s) 161, 495, 1034
SspDI GGCGCC 1 cut(s) 279
SspMI CTAG 4 cut(s) 452, 702, 867, 1119
StuI AGGCCT 1 cut(s) 1123
StyD4I CCNGG 3 cut(s) 433, 474, 794
TaaI ACNGT 5 cut(s) 169, 530, 604, 1026, 1076
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 4 cut(s) 147, 172, 774, 1104
TasI AATT 2 cut(s) 485, 697
TatI WGTACW 2 cut(s) 129, 362
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 599, 708, 1281
Tru9I TTAA 3 cut(s) 599, 708, 1281
TscAI CASTG 8 cut(s) 55, 172, 533, 769, 1029, 1075, 1186, 1224
TseFI GTSAC 4 cut(s) 163, 478, 1026, 1066
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 4 cut(s) 163, 478, 1026, 1066
TspDTI ATGAA 6 cut(s) 53, 536, 604, 741, 1158, 1328
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 8 cut(s) 55, 172, 533, 769, 1029, 1075, 1186, 1224
VpaK11BI GGWCC 2 cut(s) 747, 1214
XapI RAATTY 1 cut(s) 485
XceI RCATGY 2 cut(s) 989, 1034
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 452, 702, 867, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.