MD06G1137500.v1.1

Omega-hydroxypalmitate O-feruloyl

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
28262441 .. 28265922
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1137500.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGCGGATATCAGTGACCAAGCCTTTGAGCTTATTGTAAAGAAAGAAGAACCAACTCTGGTGCCTCCTGAATCCGAAACGGAGAAGGGCCTGTACTACCTCTCGAACCTGGACCAGAACATTGCGGTCATAGTCCGAACCATGTACTGCTTCAAGTCGGATTCAAAAGGGAACGAAGAAGCTGCGGAAGTCATAAAGAAAGCATTATCAAAAATTCTTGTTCACTATTACCCTTTTGCAGGAAAGTTAACTATCAGCACAGAAGGGAAGCTGATTATCGATTGCACAGGAGACGGTGCTATGTTTGTTGAAGCTGAAGCCAACTGCGAAATGGAAAAGATAGGTGACACAACAAAGCCTGATCCTAAGACTCTTGGGAATCTAGTTCATGATATTCCTGGTGCCAAGAACATACTTGAGATTCCTCTTTTGACAGTTCAGGTGACTAAATTCACATGCGGAGGGTTTGCTCTAGGGCTATGTATCAACCATTGTACGTCCGATGGTATCTCCGTAATGGAATTTATCAACTCATGGGGTGATAGCGCAAGAGGCTTGCAGCTCAAGGTTGTGCCATTTCTCGACAGAAACATACTCAAACCCAGAAACCCACCAAAGATAGAGTTTTCTCATGATGAATTCTTTCAGATCGAAGACATATCTGAAAACTACAAGCTCTATGAGGAAGAAGAACTGCTATACAGCGCCTTCTGTTTCAACCCTGAGAAGCTCGAAAAGCTGAAGAAAATGGCCATGGAAGATGGGGTTCTTGAAAACTGCACAACATTTAAAGCGCTCTCTGCCTTTGTGTGGAGAGCTAGAACTAAGGCCTTGAGAATGAGACCAGATCAAAAAACGAAGCTCCTTTTCGCCGTTGATGGGCGCTCAAAACTTGAGCCACCAGTACCAGAAGGGTTATTTGGGAATGCAATTTTGTTGACGCATGCAATGTGCAGTGCTGGGGAGTTACTGGAAAATCCGCTTTCATTTGCAGTTGGGTTAGTTGATAAGGCGGTTAAAATGGTGACGAGCAGTTACATGAGGTCGGTGGTCGATTACTTTGAAGTGACAAGAGCTAGGCCTTCTTTGGCAGCAACCCTTTTGATAACAGCTTGGTCCAAGCTAAGTTTCCACACAACTGACTTTGGCTGGGGAGAGCCTGTGTTTTCAGGGCCGGTGGGTTTGCCTGAGAAGGAAGTAAGTTTGTTTCTACCTCATGGAGAAGATAGGAAAAGCATACATGTGCTTTTGGGTTTGCCAGCTTCTGCTATGGAGATCTTTGAAGATCTGACGAGGCAGATTTAA

Protein Analysis

435

Amino Acids

48.31

Weight (kDa)

5.21

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 13 - 429 1e-95 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 61, 401
AciI CCGC 6 cut(s) 5, 125, 185, 459, 980, 1013
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 4 cut(s) 213, 449, 521, 638
AcuI CTGAAG 2 cut(s) 336, 761
AfaI GTAC 4 cut(s) 95, 146, 496, 906
AfeI AGCGCT 1 cut(s) 795
AfiI CCNNNNNNNGG 3 cut(s) 239, 810, 879
AflIII ACRYGT 1 cut(s) 1240
AgsI TTSAA 7 cut(s) 154, 165, 311, 718, 773, 1064, 1283
AjnI CCWGG 2 cut(s) 108, 397
AjuI GAANNNNNNNTTGG 4 cut(s) 903, 935, 1112, 1144
Alw26I GTCTC 2 cut(s) 285, 835
AlwI GGATC 1 cut(s) 356
AlwNI CAGNNNCTG 1 cut(s) 1265
Aor51HI AGCGCT 1 cut(s) 795
AoxI GGCC 5 cut(s) 88, 750, 828, 1079, 1172
ApeKI GCWGC 3 cut(s) 182, 559, 1091
ApoI RAATTY 4 cut(s) 213, 449, 521, 638
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp700I GAANNNNTTC 1 cut(s) 642
AspLEI GCGC 4 cut(s) 548, 707, 796, 885
AspS9I GGNCC 4 cut(s) 88, 112, 1116, 1172
AsuHPI GGTGA 4 cut(s) 356, 454, 551, 1036
AvaII GGWCC 2 cut(s) 112, 1116
BalI TGGCCA 1 cut(s) 752
BanI GGYRCC 2 cut(s) 61, 401
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
BbsI GAAGAC 1 cut(s) 660
BbvI GCAGC 3 cut(s) 169, 571, 1103
BccI CCATC 3 cut(s) 497, 755, 872
BceAI ACGGC 1 cut(s) 857
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 2 cut(s) 110, 399
BcoDI GTCTC 2 cut(s) 285, 835
BfaI CTAG 4 cut(s) 383, 473, 819, 1077
BfoI RGCGCY 3 cut(s) 708, 797, 886
BglII AGATCT 2 cut(s) 1275, 1285
BisI GCNGC 3 cut(s) 183, 560, 1092
BlsI GCNGC 3 cut(s) 184, 561, 1093
Bme1390I CCNGG 2 cut(s) 110, 399
Bme18I GGWCC 2 cut(s) 112, 1116
BmgT120I GGNCC 4 cut(s) 88, 112, 1116, 1172
BmiI GGNNCC 2 cut(s) 63, 403
BmrFI CCNGG 2 cut(s) 110, 399
BpiI GAAGAC 1 cut(s) 660
BpuEI CTTGAG 4 cut(s) 437, 548, 853, 914
Bsa29I ATCGAT 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 753
BsaXI ACNNNNNCTCC 2 cut(s) 1146, 1176
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 810, 879
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 2 cut(s) 902, 975
Bse3DI GCAATG 2 cut(s) 120, 954
BseBI CCWGG 2 cut(s) 110, 399
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 239, 810, 879
BseMI GCAATG 2 cut(s) 120, 954
BseMII CTCAG 2 cut(s) 714, 1179
BseNI ACTGG 2 cut(s) 902, 975
BseXI GCAGC 3 cut(s) 169, 571, 1103
BseYI CCCAGC 2 cut(s) 959, 1149
BsgI GTGCAG 2 cut(s) 763, 973
BshFI GGCC 5 cut(s) 90, 752, 830, 1081, 1174
BshNI GGYRCC 2 cut(s) 61, 401
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 1 cut(s) 1175
BslI CCNNNNNNNGG 3 cut(s) 239, 810, 879
BsmAI GTCTC 2 cut(s) 285, 835
BsmBI CGTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 5 cut(s) 90, 752, 830, 1081, 1174
Bso31I GGTCTC 1 cut(s) 835
Bsp143I GATC 5 cut(s) 361, 648, 847, 1275, 1285
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 6 cut(s) 5, 125, 185, 459, 980, 1013
BspANI GGCC 5 cut(s) 90, 752, 830, 1081, 1174
BspCNI CTCAG 2 cut(s) 715, 1180
BspDI ATCGAT 1 cut(s) 279
BspHI TCATGA 2 cut(s) 388, 631
BspLI GGNNCC 2 cut(s) 63, 403
BspPI GGATC 1 cut(s) 356
BspT107I GGYRCC 2 cut(s) 61, 401
BspTNI GGTCTC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 120, 954
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 2 cut(s) 902, 975
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 5 cut(s) 361, 648, 847, 1275, 1285
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 110, 399
Bst4CI ACNGT 2 cut(s) 296, 436
BstC8I GCNNGC 3 cut(s) 557, 945, 1260
BstDEI CTNAG 5 cut(s) 366, 723, 825, 1124, 1188
BstDSI CCRYGG 1 cut(s) 753
BstENI CCTNNNNNAGG 1 cut(s) 237
BstH2I RGCGCY 3 cut(s) 708, 797, 886
BstHHI GCGC 4 cut(s) 548, 707, 796, 885
BstKTI GATC 5 cut(s) 364, 651, 850, 1278, 1288
BstMAI GTCTC 2 cut(s) 285, 835
BstMBI GATC 5 cut(s) 361, 648, 847, 1275, 1285
BstMWI GCNNNNNNNGC 3 cut(s) 552, 736, 800
BstNI CCWGG 2 cut(s) 110, 399
BstNSI RCATGY 3 cut(s) 459, 947, 1244
BstSCI CCNGG 2 cut(s) 108, 397
BstV1I GCAGC 3 cut(s) 169, 571, 1103
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 2 cut(s) 1275, 1285
BstYI RGATCY 2 cut(s) 1275, 1285
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 5 cut(s) 90, 752, 830, 1081, 1174
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 753
BtsI GCAGTG 1 cut(s) 961
BtsIMutI CAGTG 2 cut(s) 19, 961
Cac8I GCNNGC 3 cut(s) 557, 945, 1260
CaiI CAGNNNCTG 1 cut(s) 1265
CciI TCATGA 2 cut(s) 388, 631
CfoI GCGC 4 cut(s) 548, 707, 796, 885
Cfr10I RCCGGY 1 cut(s) 1174
Cfr13I GGNCC 4 cut(s) 88, 112, 1116, 1172
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 949
Csp6I GTAC 4 cut(s) 94, 145, 495, 905
CviQI GTAC 4 cut(s) 94, 145, 495, 905
DdeI CTNAG 5 cut(s) 366, 723, 825, 1124, 1188
DpnI GATC 5 cut(s) 363, 650, 849, 1277, 1287
DpnII GATC 5 cut(s) 361, 648, 847, 1275, 1285
DraI TTTAAA 1 cut(s) 790
EaeI YGGCCR 1 cut(s) 750
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 753
Eco147I AGGCCT 2 cut(s) 830, 1081
Eco31I GGTCTC 1 cut(s) 835
Eco32I GATATC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 112, 1116
Eco47III AGCGCT 1 cut(s) 795
Eco57I CTGAAG 2 cut(s) 336, 761
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 108, 397
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 183, 560, 1092
Fsp4HI GCNGC 3 cut(s) 183, 560, 1092
FspBI CTAG 4 cut(s) 383, 473, 819, 1077
GlaI GCGC 4 cut(s) 547, 706, 795, 884
GluI GCNGC 3 cut(s) 183, 560, 1092
GsaI CCCAGC 2 cut(s) 963, 1153
HaeII RGCGCY 3 cut(s) 708, 797, 886
HaeIII GGCC 5 cut(s) 90, 752, 830, 1081, 1174
HapII CCGG 1 cut(s) 1175
HgaI GACGC 1 cut(s) 949
HhaI GCGC 4 cut(s) 548, 707, 796, 885
Hin6I GCGC 4 cut(s) 546, 705, 794, 883
HinP1I GCGC 4 cut(s) 546, 705, 794, 883
HincII GTYRAC 2 cut(s) 249, 939
HindII GTYRAC 2 cut(s) 249, 939
HinfI GANTC 5 cut(s) 71, 161, 370, 379, 421
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 1175
HphI GGTGA 4 cut(s) 356, 454, 551, 1036
Hpy166II GTNNAC 3 cut(s) 223, 249, 939
Hpy188I TCNGA 7 cut(s) 76, 137, 160, 502, 648, 664, 1290
Hpy188III TCNNGA 6 cut(s) 68, 103, 389, 581, 632, 770
Hpy8I GTNNAC 3 cut(s) 223, 249, 939
HpyAV CCTTC 6 cut(s) 79, 257, 718, 905, 1092, 1186
HpyCH4III ACNGT 2 cut(s) 296, 436
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 8 cut(s) 239, 285, 559, 780, 929, 947, 954, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 552, 736, 800
HpyF3I CTNAG 5 cut(s) 366, 723, 825, 1124, 1188
HpySE526I ACGT 1 cut(s) 497
HspAI GCGC 4 cut(s) 546, 705, 794, 883
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 5 cut(s) 361, 648, 847, 1275, 1285
LmnI GCTCC 1 cut(s) 867
Lsp1109I GCAGC 3 cut(s) 169, 571, 1103
MaeI CTAG 4 cut(s) 383, 473, 819, 1077
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 7 cut(s) 14, 344, 442, 966, 1024, 1034, 1066
MalI GATC 5 cut(s) 363, 650, 849, 1277, 1287
MboI GATC 5 cut(s) 361, 648, 847, 1275, 1285
MboII GAAGA 9 cut(s) 59, 188, 665, 698, 701, 754, 770, 1235, 1295
MflI RGATCY 2 cut(s) 1275, 1285
MlsI TGGCCA 1 cut(s) 752
MluCI AATT 5 cut(s) 213, 449, 521, 638, 930
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 9 cut(s) 75, 110, 435, 455, 545, 676, 1035, 1224, 1287
Mox20I TGGCCA 1 cut(s) 752
MroXI GAANNNNTTC 1 cut(s) 642
MscI TGGCCA 1 cut(s) 752
MseI TTAA 4 cut(s) 248, 789, 1017, 1303
MslI CAYNNNNRTG 1 cut(s) 1241
Msp20I TGGCCA 1 cut(s) 752
MspI CCGG 1 cut(s) 1175
MspR9I CCNGG 2 cut(s) 110, 399
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 2 cut(s) 110, 399
MwoI GCNNNNNNNGC 3 cut(s) 552, 736, 800
NcoI CCATGG 1 cut(s) 753
NdeII GATC 5 cut(s) 361, 648, 847, 1275, 1285
NlaIV GGNNCC 2 cut(s) 63, 403
NmuCI GTSAC 5 cut(s) 14, 344, 442, 1024, 1066
NspI RCATGY 3 cut(s) 459, 947, 1244
PaeI GCATGC 1 cut(s) 947
PagI TCATGA 2 cut(s) 388, 631
PceI AGGCCT 2 cut(s) 830, 1081
PciI ACATGT 1 cut(s) 1240
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 4 cut(s) 71, 161, 379, 421
PkrI GCNGC 3 cut(s) 184, 561, 1093
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 108, 397
PspFI CCCAGC 2 cut(s) 959, 1149
PspGI CCWGG 2 cut(s) 108, 397
PspN4I GGNNCC 2 cut(s) 63, 403
PspPI GGNCC 4 cut(s) 88, 112, 1116, 1172
PstNI CAGNNNCTG 1 cut(s) 1265
PsuI RGATCY 2 cut(s) 1275, 1285
RsaI GTAC 4 cut(s) 95, 146, 496, 906
RsaNI GTAC 4 cut(s) 94, 145, 495, 905
RseI CAYNNNNRTG 1 cut(s) 1241
SaqAI TTAA 4 cut(s) 248, 789, 1017, 1303
SatI GCNGC 3 cut(s) 183, 560, 1092
Sau3AI GATC 5 cut(s) 361, 648, 847, 1275, 1285
Sau96I GGNCC 4 cut(s) 88, 112, 1116, 1172
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 110, 399
SinI GGWCC 2 cut(s) 112, 1116
SmiMI CAYNNNNRTG 1 cut(s) 1241
SmlI CTYRAG 4 cut(s) 416, 563, 832, 893
SmoI CTYRAG 4 cut(s) 416, 563, 832, 893
SphI GCATGC 1 cut(s) 947
Sse9I AATT 5 cut(s) 213, 449, 521, 638, 930
SseBI AGGCCT 2 cut(s) 830, 1081
SsiI CCGC 6 cut(s) 5, 125, 185, 459, 980, 1013
SspMI CTAG 4 cut(s) 383, 473, 819, 1077
StuI AGGCCT 2 cut(s) 830, 1081
StyD4I CCNGG 2 cut(s) 108, 397
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 2 cut(s) 296, 436
TaiI ACGT 1 cut(s) 500
TaqI TCGA 6 cut(s) 104, 279, 582, 651, 732, 1053
TasI AATT 5 cut(s) 213, 449, 521, 638, 930
TatI WGTACW 2 cut(s) 93, 144
TfiI GAWTC 4 cut(s) 71, 161, 379, 421
Tru1I TTAA 4 cut(s) 248, 789, 1017, 1303
Tru9I TTAA 4 cut(s) 248, 789, 1017, 1303
TscAI CASTG 2 cut(s) 19, 961
TseFI GTSAC 5 cut(s) 14, 344, 442, 1024, 1066
TseI GCWGC 3 cut(s) 182, 559, 1091
Tsp45I GTSAC 5 cut(s) 14, 344, 442, 1024, 1066
TspDTI ATGAA 3 cut(s) 377, 651, 975
TspGWI ACGGA 2 cut(s) 95, 502
TspRI CASTG 2 cut(s) 19, 961
VpaK11BI GGWCC 2 cut(s) 112, 1116
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 213, 449, 521, 638
XceI RCATGY 3 cut(s) 459, 947, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 4 cut(s) 383, 473, 819, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.