Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001924.1

Orthogroup ID

OG0003048

Physical Location & Seq

Genomic Coordinates Reverse (-)

46541 .. 49836

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001924.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ctgcaaacgaggtgctgcttggctattcaagtgagcagatattgtgtgatgggggataacaattacaaaacctttgagtgtaagcttattgtgaagaaagaagaaccaactcttgtacctcctgcagcagaaacggagaagggcctctacttcctctcaaatctagatcagaacattgcagtcatagttcgtactctttactattataaatcagattcaaaagggaatgaggacgttgtggaagtcatgaagaaagccttctcaaaggtacttgttcattactatccactggcaggaaggttaagtataagcacagaggggaagctgatagtggattgcacaggagatggagctgtgtttttggaagcggaagctaactgtgaaatggaggaggtaggagacattacaaagccggatcctgtgactcttgggaagctgatttatgatgttcctggtgccaagaacatacttgagattcctcttttggttgctcaggtgacaaggttcaaatgtggaggttttgtccttgggttatgtatgaaccattgtatggctgatgggatttctgcagtggaatttttgaactcatggggtgagactgctagaggcttgcctcttaaggttcccccatttctagacagaagcatactcaaagcccgaaacccaccaaagatggagttccctcaccatgaatttgctcagatagaagatatatctgatatcaacaaactttatgaagaagaagaaatggtttatagttccttctgttttgaaccagagaagcttgaaaagctcaagaaaatggccatggaagatggggttcttgaaaaatgtacatcatttgtagcactctctgcctttgtctggagagcgaggactcgggccttgaggatggtaccagatcagaaaacaaagctactttttgctgttgatgtacggtcaagatttgagccaccgataccaaaaggatactttggaaatggaattgtgctgacaaatgcattatgcagtacaggggagctattagagaacccattgtcatttgctgttgggctggttgataaggcaattcacatggttaatgatagttatatgagatcagtcatcgactactttgaaatcacaagagctaggccttctttgacagcaactcttttgataacaacatggtctaggctttctttccacactgctgatttcggttggggagatgctgtgttttcggggccagtgggtttgcctgagaaggaagtaagcttgttccttcctcatgggaaagacaggaaaagcattaatgtgtttttgggaatgccagcttctgctatgaaggtgtttgaagagttgatgcagacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

451

Amino Acids

50.46

Weight (kDa)

5.7

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41040 AT5G41040
fragaria_vesca	FvH4_5g08760 FvH4_5g08760 FvH4_6g53880
malus_domestica	MD06G1137500.v1.1 MD09G1007600.v1.1 MD14G1152300.v1.1 MD17G1011500.v1.1
prunus_persica	Prupe.3G309400_v2.0.a1 Prupe.5G147300_v2.0.a1 Prupe.5G147300_v2.0.a1
pyrus_communis	pycom06g12870 pycom111g00590 pycom17g00620
rosa_chinensis	RchiOBHm_Chr2g0176041 RchiOBHm_Chr7g0189511
rosa_laevigata	RLG00000004605 RLG00000022375
rosa_multiflora	Rmu_co8455597.1_g000001 Rmu_sc0001924.1_g000008 Rmu_sc0033063.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076830 Rroxscaffold_3G00265340
rosa_rugosa	Rorug02G0589800 Rorug02G0589900 Rorug06G0498500 Rorug06G0498500
rosa_samantha	Rh2AG668700 Rh2BG680300 Rh2CG643200 Rh2DG694000 Rh7AG103500 Rh7BG106000 Rh7CG108200 Rh7DG105600
rosa_wichuraiana	Rw2G054840 Rw7G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	895
AccB1I	GGYRCC	2 cut(s)	455, 895
AccB7I	CCANNNNNTGG	1 cut(s)	550
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	410, 423
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	2 cut(s)	575, 692
AfaI	GTAC	7 cut(s)	117, 193, 270, 835, 897, 936, 1012
AfiI	CCNNNNNNNGG	3 cut(s)	293, 550, 864
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	9 cut(s)	29, 219, 508, 583, 773, 788, 827, 1118, 1337
AjnI	CCWGG	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	393, 590
AlwI	GGATC	2 cut(s)	410, 423
AlwNI	CAGNNNCTG	1 cut(s)	1319
Ama87I	CYCGRG	1 cut(s)	879
AoxI	GGCC	5 cut(s)	142, 804, 882, 1133, 1226
ApeKI	GCWGC	2 cut(s)	15, 125
ApoI	RAATTY	2 cut(s)	575, 692
AseI	ATTAAT	1 cut(s)	1293
Asp700I	GAANNNNTTC	1 cut(s)	257
Asp718I	GGTACC	1 cut(s)	895
AspS9I	GGNCC	3 cut(s)	142, 882, 1226
AsuHPI	GGTGA	3 cut(s)	508, 605, 677
AvaI	CYCGRG	1 cut(s)	879
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BalI	TGGCCA	1 cut(s)	806
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	2 cut(s)	455, 895
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BbvI	GCAGC	2 cut(s)	2, 137
BccI	CCATC	6 cut(s)	43, 341, 551, 667, 809, 886
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	962
BcoDI	GTCTC	2 cut(s)	393, 590
BfaI	CTAG	5 cut(s)	164, 603, 635, 1131, 1173
BfmI	CTRYAG	2 cut(s)	123, 567
BfrI	CTTAAG	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	962
BisI	GCNGC	2 cut(s)	16, 126
BlsI	GCNGC	2 cut(s)	17, 127
Bme1390I	CCNGG	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	879
BmgT120I	GGNCC	3 cut(s)	142, 882, 1226
BmiI	GGNNCC	5 cut(s)	417, 457, 624, 897, 1227
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	1201, 1335
BpmI	CTGGAG	1 cut(s)	886
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	3 cut(s)	491, 779, 907
BsaJI	CCNNGG	2 cut(s)	526, 807
BsaXI	ACNNNNNCTCC	4 cut(s)	507, 537, 1200, 1230
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 550, 864
Bse1I	ACTGG	2 cut(s)	294, 1229
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	526, 807
BseGI	GGATG	1 cut(s)	897
BseLI	CCNNNNNNNGG	3 cut(s)	293, 550, 864
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	506, 713, 1233
BseNI	ACTGG	2 cut(s)	294, 1229
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	2, 137
BshFI	GGCC	5 cut(s)	144, 806, 884, 1135, 1228
BshNI	GGYRCC	2 cut(s)	455, 895
BsiHKCI	CYCGRG	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	293, 550, 864
BsmAI	GTCTC	2 cut(s)	393, 590
BsmI	GAATGC	1 cut(s)	1314
BsnI	GGCC	5 cut(s)	144, 806, 884, 1135, 1228
BsoBI	CYCGRG	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	833
Bsp143I	GATC	4 cut(s)	166, 415, 901, 1097
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	5 cut(s)	144, 806, 884, 1135, 1228
BspCNI	CTCAG	3 cut(s)	505, 712, 1234
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	5 cut(s)	417, 457, 624, 897, 1227
BspMAI	CTGCAG	2 cut(s)	127, 571
BspPI	GGATC	2 cut(s)	410, 423
BspT107I	GGYRCC	2 cut(s)	455, 895
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	833
BsrI	ACTGG	2 cut(s)	294, 1229
BssECI	CCNNGG	2 cut(s)	526, 807
BssMI	GATC	4 cut(s)	166, 415, 901, 1097
BssT1I	CCWWGG	2 cut(s)	526, 807
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	380, 939
Bst6I	CTCTTC	1 cut(s)	1332
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstAUI	TGTACA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	611, 1314
BstDEI	CTNAG	3 cut(s)	492, 699, 1242
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	897
BstKTI	GATC	4 cut(s)	169, 418, 904, 1100
BstMAI	GTCTC	2 cut(s)	393, 590
BstMBI	GATC	4 cut(s)	166, 415, 901, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 854
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	2 cut(s)	123, 567
BstV1I	GCAGC	2 cut(s)	2, 137
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	962
BsuRI	GGCC	5 cut(s)	144, 806, 884, 1135, 1228
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	1 cut(s)	897
BtsI	GCAGTG	2 cut(s)	576, 1188
BtsIMutI	CAGTG	4 cut(s)	287, 576, 1188, 1236
Cac8I	GCNNGC	2 cut(s)	611, 1314
CaiI	CAGNNNCTG	1 cut(s)	1319
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	142, 882, 1226
Csp6I	GTAC	7 cut(s)	116, 192, 269, 834, 896, 935, 1011
CviAII	CATG	7 cut(s)	247, 588, 689, 808, 1075, 1167, 1271
CviQI	GTAC	7 cut(s)	116, 192, 269, 834, 896, 935, 1011
DdeI	CTNAG	3 cut(s)	492, 699, 1242
DpnI	GATC	4 cut(s)	168, 417, 903, 1099
DpnII	GATC	4 cut(s)	166, 415, 901, 1097
EaeI	YGGCCR	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	1332
EarI	CTCTTC	1 cut(s)	1332
Eco130I	CCWWGG	2 cut(s)	526, 807
Eco147I	AGGCCT	1 cut(s)	1135
Eco32I	GATATC	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	526, 807
EcoT22I	ATGCAT	1 cut(s)	1003
ErhI	CCWWGG	2 cut(s)	526, 807
FaeI	CATG	7 cut(s)	250, 591, 692, 811, 1078, 1170, 1274
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	7 cut(s)	246, 587, 688, 807, 1074, 1166, 1270
Fnu4HI	GCNGC	2 cut(s)	16, 126
FokI	GGATG	1 cut(s)	904
Fsp4HI	GCNGC	2 cut(s)	16, 126
FspBI	CTAG	5 cut(s)	164, 603, 635, 1131, 1173
GluI	GCNGC	2 cut(s)	16, 126
GsuI	CTGGAG	1 cut(s)	886
HaeIII	GGCC	5 cut(s)	144, 806, 884, 1135, 1228
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	7 cut(s)	250, 591, 692, 811, 1078, 1170, 1274
HindIII	AAGCTT	3 cut(s)	83, 782, 1255
HinfI	GANTC	4 cut(s)	215, 424, 475, 877
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	3 cut(s)	508, 605, 677
Hpy188I	TCNGA	5 cut(s)	171, 214, 702, 718, 906
Hpy188III	TCNNGA	7 cut(s)	164, 247, 635, 796, 824, 865, 942
HpyAV	CCTTC	8 cut(s)	133, 268, 291, 772, 1146, 1240, 1274, 1321
HpyCH4III	ACNGT	2 cut(s)	380, 939
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	8 cut(s)	4, 125, 179, 339, 569, 1001, 1008, 1348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 854
HpyF3I	CTNAG	3 cut(s)	492, 699, 1242
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	7 cut(s)	250, 591, 692, 811, 1078, 1170, 1274
KpnI	GGTACC	1 cut(s)	899
Kzo9I	GATC	4 cut(s)	166, 415, 901, 1097
LmnI	GCTCC	2 cut(s)	350, 1018
Lsp1109I	GCAGC	2 cut(s)	2, 137
LweI	GCATC	2 cut(s)	1201, 1335
MaeI	CTAG	5 cut(s)	164, 603, 635, 1131, 1173
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	421, 496
MalI	GATC	4 cut(s)	168, 417, 903, 1099
MboI	GATC	4 cut(s)	166, 415, 901, 1097
MboII	GAAGA	9 cut(s)	106, 113, 262, 719, 749, 752, 755, 824, 1349
MflI	RGATCY	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	5 cut(s)	61, 575, 692, 984, 1068
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	2 cut(s)	418, 871
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	1003
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	4 cut(s)	302, 618, 1080, 1293
MslI	CAYNNNNRTG	1 cut(s)	1295
Msp20I	TGGCCA	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	1314
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	790, 854
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	4 cut(s)	166, 415, 901, 1097
NlaIII	CATG	7 cut(s)	250, 591, 692, 811, 1078, 1170, 1274
NlaIV	GGNNCC	5 cut(s)	417, 457, 624, 897, 1227
NmuCI	GTSAC	2 cut(s)	421, 496
NsiI	ATGCAT	1 cut(s)	1003
PagI	TCATGA	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	1135
PctI	GAATGC	1 cut(s)	1314
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	215, 475
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	2 cut(s)	17, 127
PleI	GAGTC	2 cut(s)	418, 871
PpsI	GAGTC	2 cut(s)	418, 871
PshBI	ATTAAT	1 cut(s)	1293
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	5 cut(s)	417, 457, 624, 897, 1227
PspPI	GGNCC	3 cut(s)	142, 882, 1226
PstI	CTGCAG	2 cut(s)	127, 571
PstNI	CAGNNNCTG	1 cut(s)	1319
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	7 cut(s)	117, 193, 270, 835, 897, 936, 1012
RsaNI	GTAC	7 cut(s)	116, 192, 269, 834, 896, 935, 1011
RseI	CAYNNNNRTG	1 cut(s)	1295
SaqAI	TTAA	4 cut(s)	302, 618, 1080, 1293
SatI	GCNGC	2 cut(s)	16, 126
Sau3AI	GATC	4 cut(s)	166, 415, 901, 1097
Sau96I	GGNCC	3 cut(s)	142, 882, 1226
SchI	GAGTC	2 cut(s)	418, 871
ScrFI	CCNGG	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	1201, 1335
SfcI	CTRYAG	2 cut(s)	123, 567
SmiMI	CAYNNNNRTG	1 cut(s)	1295
SmlI	CTYRAG	4 cut(s)	470, 617, 794, 886
SmoI	CTYRAG	4 cut(s)	470, 617, 794, 886
Sse9I	AATT	5 cut(s)	61, 575, 692, 984, 1068
SseBI	AGGCCT	1 cut(s)	1135
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	5 cut(s)	164, 603, 635, 1131, 1173
StuI	AGGCCT	1 cut(s)	1135
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	2 cut(s)	526, 807
TaaI	ACNGT	2 cut(s)	380, 939
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	1107
TasI	AATT	5 cut(s)	61, 575, 692, 984, 1068
TatI	WGTACW	2 cut(s)	833, 1010
TfiI	GAWTC	2 cut(s)	215, 475
Tru1I	TTAA	4 cut(s)	302, 618, 1080, 1293
Tru9I	TTAA	4 cut(s)	302, 618, 1080, 1293
TscAI	CASTG	4 cut(s)	294, 576, 1195, 1236
TseFI	GTSAC	2 cut(s)	421, 496
TseI	GCWGC	2 cut(s)	15, 125
Tsp45I	GTSAC	2 cut(s)	421, 496
TspDTI	ATGAA	6 cut(s)	263, 266, 554, 705, 750, 1340
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	4 cut(s)	294, 576, 1195, 1236
Van91I	CCANNNNNTGG	1 cut(s)	550
Vha464I	CTTAAG	1 cut(s)	617
VspI	ATTAAT	1 cut(s)	1293
XapI	RAATTY	2 cut(s)	575, 692
XbaI	TCTAGA	2 cut(s)	163, 634
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	5 cut(s)	164, 603, 635, 1131, 1173
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.