Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Forward (+)

16846150 .. 16848568

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGGAGAGTCACCGGACTTGCCGCGCGCACAATCTCATCCTCCGTCGCCATCAATTCACGTCTCACTCAATCCATGGCGATTACAACCATTTCATCCTCCGAACCTATCTCCCGAAGATTCGGTGGTCTTCCAGAGATTAAAACTCCGTCTTTCGCCGGCGGAGTCGCTGGGGTTGTGTTCTTCTCTGCCGCTGCTGTATCGTCTCTTGGTCAAGAAGTTCACGCTAAGGAAATGGCTCAGAAGTTTAATCCTAAAGAAGTTGTTCTGTATCAGTACGAAGCTTGCCCTTTCTGTAACAAGGTTAAAGCGTTTTTGGATTACAACAAGATTCCATACAAGGTTGTTGAAGTGAATCCTATCAGTAAGAAAGAAATCAAATGGTCTGATTATAAGAAGGTGCCTATTCTTACTGTAGATGGTGAACAAATGGTTGATTCTTCAGTGATAATCGATAGCTTATTCCAAAAGATGCACCCTGAAATTTCCAAGTCCGAAGATGATGAAGAGACTAAATGGCGCAAGTGGGTGGACAACCACCTTGTGCATCTTTTGTCACCAAACATATACAGGAATACTTCAGAGGCTCTTGAGTCCTTTGAATATATCACCACACATGGGAATTTCAGTTTCACTGAAAGATTAGTGGCAAAGTATGCAGGAGCAACGGCAATGTACTTTGTATCAAAGAAATTGAAGAAGAAATATAACATTACAGATGAACGTGCGGCTCTTTACGATGCTGCAGAGACATGGGTCGATGCCTTGAAAGAGCGTCCATACCTTGGTGGGTCAAAACCAAACTTGGGCGATCTCGCTGTATTCGGTGTTCTGAGGCCAATAAGGTACCTTCGATCGGGTAAGGATATGGTGGACAACACACGCATAGGTGAATGGTATTCTCGAATGGAGAACACGGTCGGAGAACCTTCTAGGATCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3

Protein Analysis

315

Amino Acids

35.55

Weight (kDa)

9.03

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	88 - 142	5.1e-11	Glutaredoxin
GST_N_3	PF13417	90 - 157	1.9e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	95 - 152	3.5e-08	Glutathione S-transferase, N-terminal domain
GST_N_4	PF17172	97 - 185	2.4e-09	Glutathione S-transferase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc65I	GGTACC	1 cut(s)	846
AccB1I	GGYRCC	2 cut(s)	400, 846
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	2 cut(s)	26, 28
AciI	CCGC	4 cut(s)	24, 162, 192, 728
AclWI	GGATC	1 cut(s)	944
AcsI	RAATTY	2 cut(s)	483, 622
AcuI	CTGAAG	2 cut(s)	426, 564
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	3 cut(s)	278, 677, 848
AfiI	CCNNNNNNNGG	4 cut(s)	618, 785, 806, 856
AgsI	TTSAA	4 cut(s)	350, 602, 697, 769
AjiI	CACGTC	1 cut(s)	62
AluBI	AGCT	2 cut(s)	284, 459
AluI	AGCT	2 cut(s)	284, 459
Alw26I	GTCTC	4 cut(s)	68, 210, 503, 743
AlwI	GGATC	1 cut(s)	944
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	2 cut(s)	194, 743
ApoI	RAATTY	2 cut(s)	483, 622
Asp700I	GAANNNNTTC	1 cut(s)	264
Asp718I	GGTACC	1 cut(s)	846
AspLEI	GCGC	3 cut(s)	28, 30, 522
AsuHPI	GGTGA	5 cut(s)	4, 434, 549, 601, 902
BanI	GGYRCC	2 cut(s)	400, 846
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	181, 730
BccI	CCATC	2 cut(s)	59, 413
BceAI	ACGGC	1 cut(s)	684
BcoDI	GTCTC	4 cut(s)	68, 210, 503, 743
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	2 cut(s)	414, 744
BisI	GCNGC	5 cut(s)	24, 192, 195, 729, 744
BlsI	GCNGC	5 cut(s)	25, 193, 196, 730, 745
BmgBI	CACGTC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	402, 848
BmsI	GCATC	4 cut(s)	462, 556, 730, 751
BoxI	GACNNNNGTC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	75, 784
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	4 cut(s)	618, 785, 806, 856
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	75, 784
BseGI	GGATG	2 cut(s)	38, 95
BseLI	CCNNNNNNNGG	4 cut(s)	618, 785, 806, 856
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	254, 824
BsePI	GCGCGC	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	181, 730
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	26, 28
Bsh1285I	CGRYCG	2 cut(s)	857, 921
BshFI	GGCC	1 cut(s)	838
BshNI	GGYRCC	2 cut(s)	400, 846
BshVI	ATCGAT	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	857, 921
BsiSI	CCGG	2 cut(s)	15, 159
BslI	CCNNNNNNNGG	4 cut(s)	618, 785, 806, 856
BsmAI	GTCTC	4 cut(s)	68, 210, 503, 743
BsmBI	CGTCTC	2 cut(s)	68, 210
BsnI	GGCC	1 cut(s)	838
Bsp143I	GATC	3 cut(s)	811, 854, 936
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	24, 162, 192, 728
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	2 cut(s)	253, 825
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	26, 28
BspLI	GGNNCC	2 cut(s)	402, 848
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	1 cut(s)	944
BspT107I	GGYRCC	2 cut(s)	400, 846
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	75, 784
BssHII	GCGCGC	1 cut(s)	26
BssMI	GATC	3 cut(s)	811, 854, 936
BssT1I	CCWWGG	2 cut(s)	75, 784
Bst4CI	ACNGT	2 cut(s)	415, 919
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	3 cut(s)	28, 160, 286
BstDEI	CTNAG	3 cut(s)	228, 240, 833
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	38, 95
BstFNI	CGCG	2 cut(s)	26, 28
BstHHI	GCGC	3 cut(s)	28, 30, 522
BstKTI	GATC	3 cut(s)	814, 857, 939
BstMAI	GTCTC	4 cut(s)	68, 210, 503, 743
BstMBI	GATC	3 cut(s)	811, 854, 936
BstMCI	CGRYCG	2 cut(s)	857, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	755
BstSFI	CTRYAG	2 cut(s)	414, 744
BstUI	CGCG	2 cut(s)	26, 28
BstV1I	GCAGC	2 cut(s)	181, 730
BstV2I	GAAGAC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	838
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	38, 95
BtsIMutI	CAGTG	2 cut(s)	450, 633
Cac8I	GCNNGC	3 cut(s)	28, 160, 286
CfoI	GCGC	3 cut(s)	28, 30, 522
Cfr10I	RCCGGY	1 cut(s)	158
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	277, 676, 847
CviAII	CATG	3 cut(s)	76, 617, 753
CviJI	RGCY	6 cut(s)	239, 284, 459, 587, 731, 838
CviKI_1	RGCY	6 cut(s)	239, 284, 459, 587, 731, 838
CviQI	GTAC	3 cut(s)	277, 676, 847
DdeI	CTNAG	3 cut(s)	228, 240, 833
DpnI	GATC	3 cut(s)	813, 856, 938
DpnII	GATC	3 cut(s)	811, 854, 936
DraIII	CACNNNGTG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	75, 784
Eco57I	CTGAAG	2 cut(s)	426, 564
EcoT14I	CCWWGG	2 cut(s)	75, 784
ErhI	CCWWGG	2 cut(s)	75, 784
Esp3I	CGTCTC	2 cut(s)	68, 210
FaeI	CATG	3 cut(s)	79, 620, 756
FatI	CATG	3 cut(s)	75, 616, 752
Fnu4HI	GCNGC	5 cut(s)	24, 192, 195, 729, 744
FokI	GGATG	2 cut(s)	25, 82
Fsp4HI	GCNGC	5 cut(s)	24, 192, 195, 729, 744
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	3 cut(s)	27, 29, 521
GluI	GCNGC	5 cut(s)	24, 192, 195, 729, 744
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	2 cut(s)	15, 159
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	3 cut(s)	28, 30, 522
Hin1II	CATG	3 cut(s)	79, 620, 756
Hin6I	GCGC	3 cut(s)	26, 28, 520
HinP1I	GCGC	3 cut(s)	26, 28, 520
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	7 cut(s)	9, 120, 165, 331, 355, 437, 593
HpaII	CCGG	2 cut(s)	15, 159
HphI	GGTGA	5 cut(s)	4, 434, 549, 601, 902
Hpy166II	GTNNAC	4 cut(s)	223, 425, 532, 874
Hpy188I	TCNGA	7 cut(s)	103, 243, 388, 496, 583, 834, 923
Hpy188III	TCNNGA	5 cut(s)	114, 134, 215, 590, 903
Hpy8I	GTNNAC	4 cut(s)	223, 425, 532, 874
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	391, 860, 939
HpyCH4III	ACNGT	2 cut(s)	415, 919
HpyCH4IV	ACGT	2 cut(s)	61, 724
HpyCH4V	TGCA	4 cut(s)	475, 547, 659, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	3 cut(s)	228, 240, 833
HpySE526I	ACGT	2 cut(s)	61, 724
Hsp92II	CATG	3 cut(s)	79, 620, 756
HspAI	GCGC	3 cut(s)	26, 28, 520
KpnI	GGTACC	1 cut(s)	850
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	811, 854, 936
LmnI	GCTCC	1 cut(s)	662
LpnPI	CCDG	7 cut(s)	28, 147, 156, 172, 492, 556, 645
Lsp1109I	GCAGC	2 cut(s)	181, 730
LweI	GCATC	4 cut(s)	462, 556, 730, 751
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	2 cut(s)	61, 724
MaeIII	GTNAC	3 cut(s)	10, 296, 555
MalI	GATC	3 cut(s)	813, 856, 938
MboI	GATC	3 cut(s)	811, 854, 936
MboII	GAAGA	8 cut(s)	122, 129, 175, 432, 509, 518, 709, 712
MluCI	AATT	4 cut(s)	55, 483, 622, 692
MlyI	GAGTC	3 cut(s)	18, 174, 602
MmeI	TCCRAC	1 cut(s)	901
MnlI	CCTC	4 cut(s)	52, 109, 577, 828
MreI	CGCCGGCG	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	3 cut(s)	141, 249, 306
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	15, 159
MvnI	CGCG	2 cut(s)	26, 28
MwoI	GCNNNNNNNGC	1 cut(s)	656
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	811, 854, 936
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	79, 620, 756
NlaIV	GGNNCC	2 cut(s)	402, 848
NmuCI	GTSAC	2 cut(s)	10, 555
PauI	GCGCGC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	4 cut(s)	120, 331, 355, 437
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	25, 193, 196, 730, 745
Ple19I	CGATCG	1 cut(s)	857
PleI	GAGTC	3 cut(s)	17, 173, 601
PpsI	GAGTC	3 cut(s)	17, 173, 601
PshAI	GACNNNNGTC	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	402, 848
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PstI	CTGCAG	1 cut(s)	748
PteI	GCGCGC	1 cut(s)	26
PvuI	CGATCG	1 cut(s)	857
RsaI	GTAC	3 cut(s)	278, 677, 848
RsaNI	GTAC	3 cut(s)	277, 676, 847
SaqAI	TTAA	3 cut(s)	141, 249, 306
SatI	GCNGC	5 cut(s)	24, 192, 195, 729, 744
Sau3AI	GATC	3 cut(s)	811, 854, 936
SchI	GAGTC	3 cut(s)	18, 174, 602
SfaNI	GCATC	4 cut(s)	462, 556, 730, 751
SfcI	CTRYAG	2 cut(s)	414, 744
SgrAI	CRCCGGYG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	55, 483, 622, 692
SsiI	CCGC	4 cut(s)	24, 162, 192, 728
SspMI	CTAG	1 cut(s)	933
StyI	CCWWGG	2 cut(s)	75, 784
TaaI	ACNGT	2 cut(s)	415, 919
TaiI	ACGT	2 cut(s)	64, 727
TaqI	TCGA	4 cut(s)	453, 759, 853, 904
TasI	AATT	4 cut(s)	55, 483, 622, 692
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	3 cut(s)	26, 194, 731
TfiI	GAWTC	4 cut(s)	120, 331, 355, 437
Tru1I	TTAA	3 cut(s)	141, 249, 306
Tru9I	TTAA	3 cut(s)	141, 249, 306
TscAI	CASTG	2 cut(s)	450, 640
TseFI	GTSAC	2 cut(s)	10, 555
TseI	GCWGC	2 cut(s)	194, 743
Tsp45I	GTSAC	2 cut(s)	10, 555
TspDTI	ATGAA	3 cut(s)	84, 519, 735
TspGWI	ACGGA	2 cut(s)	34, 138
TspRI	CASTG	2 cut(s)	450, 640
Van91I	CCANNNNNTGG	1 cut(s)	785
XapI	RAATTY	2 cut(s)	483, 622
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.