Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Reverse (-)

333490 .. 335465

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgagaagggttaacggaatcgctttgctcggccgcaccgccgctggtattggcggcgccaacagagtcagcggcgcaactccacagcgactggttcaagcagcgacgataggctcgtgctccaattcgaatccgctgtggttcagtcgtcaaagctccggcgatcgctttggcctatcgaaaccctcagtggctgccggaggcgccaagtgcttctctacttccgtggctcaggaggtgcactcccacgtctccgccgataagttcgctccgaacgacgtcgttctgtaccagtacgaagcctgccctttctgcaacaaggttagagcatttttggactataataacattccgtacaaagttatggaggttaatcccatgagtaaaaaggagatcaaatggtctgattacaagaaggtgccgatactgaaagttgacgatgaacagatggtggattcttcagatataattgataagctattccaaagaatcaatcctgagaacagtgttgtcgatagtgaggaagaaaagaagtggcgtcagtgggtggatgatcacttggtgcatgttttatcgccaaacatatatcgaactccttcagaagctcttgagtcatttgattatataaccagtcatgggaatttcagtttatccgaaaggctagtagccaagtatggtggagctgcagcaatgtattttgtatcaaaaaaattgaagaagagacacaatatcaccgatgctcgtgcagctttatatggagctgcagagacttgggtggatgctctgaaaggccggcagtttcttggtgggtcaactccaaacttggctgatcttgctgtatttggtgttttgaggccgattcggcaccttaaatctggcaaagaaatggtggagaacacccgaatcggtgaatggtatagtcgaatggagggtgcagtgggagagtctgctagagtcagtgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3

Protein Analysis

321

Amino Acids

35.53

Weight (kDa)

9.11

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB1I	GGYRCC	4 cut(s)	56, 203, 418, 864
AciI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	2 cut(s)	444, 582
AcyI	GRCGYC	4 cut(s)	57, 204, 279, 538
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	3 cut(s)	290, 296, 356
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	98, 715
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	6 cut(s)	156, 478, 605, 683, 749, 761
AluI	AGCT	6 cut(s)	156, 478, 605, 683, 749, 761
Alw21I	GWGCWC	2 cut(s)	122, 243
Alw26I	GTCTC	3 cut(s)	256, 715, 761
Alw44I	GTGCAC	1 cut(s)	239
AlwNI	CAGNNNCTG	2 cut(s)	91, 194
AoxI	GGCC	4 cut(s)	31, 172, 790, 854
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	6 cut(s)	101, 194, 683, 686, 746, 761
ApoI	RAATTY	1 cut(s)	640
AsiSI	GCGATCGC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	3 cut(s)	59, 77, 206
AsuHPI	GGTGA	2 cut(s)	724, 920
AsuII	TTCGAA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	4 cut(s)	56, 203, 418, 864
BauI	CACGAG	2 cut(s)	115, 741
Bbv12I	GWGCWC	2 cut(s)	122, 243
BbvI	GCAGC	6 cut(s)	113, 181, 670, 698, 748, 758
BccI	CCATC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	256, 715, 761
BfaI	CTAG	2 cut(s)	662, 951
BfmI	CTRYAG	2 cut(s)	684, 762
BfoI	RGCGCY	2 cut(s)	60, 207
BglI	GCCNNNNNGGC	1 cut(s)	862
BmgBI	CACGTC	1 cut(s)	250
BmiI	GGNNCC	4 cut(s)	58, 205, 420, 866
BmsI	GCATC	2 cut(s)	727, 769
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	629
BsaHI	GRCGYC	4 cut(s)	57, 204, 279, 538
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	3 cut(s)	96, 292, 630
Bse3DI	GCAATG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	556, 784
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	201, 245, 489
BseNI	ACTGG	3 cut(s)	96, 292, 630
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	6 cut(s)	113, 181, 670, 698, 748, 758
BsgI	GTGCAG	2 cut(s)	765, 954
Bsh1285I	CGRYCG	2 cut(s)	34, 166
BshFI	GGCC	4 cut(s)	33, 174, 792, 856
BshNI	GGYRCC	4 cut(s)	56, 203, 418, 864
BsiEI	CGRYCG	2 cut(s)	34, 166
BsiHKAI	GWGCWC	2 cut(s)	122, 243
BsiSI	CCGG	3 cut(s)	159, 198, 793
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	3 cut(s)	256, 715, 761
BsmBI	CGTCTC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	33, 174, 792, 856
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	122, 243
Bsp143I	GATC	4 cut(s)	163, 393, 553, 829
BspACI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
BspANI	GGCC	4 cut(s)	33, 174, 792, 856
BspCNI	CTCAG	3 cut(s)	200, 244, 490
BspLI	GGNNCC	4 cut(s)	58, 205, 420, 866
BspMAI	CTGCAG	2 cut(s)	688, 766
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	4 cut(s)	56, 203, 418, 864
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	3 cut(s)	96, 292, 630
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	163, 393, 553, 829
BssNI	GRCGYC	4 cut(s)	57, 204, 279, 538
BssSI	CACGAG	2 cut(s)	115, 741
Bst2BI	CACGAG	2 cut(s)	115, 741
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	713
BstACI	GRCGYC	4 cut(s)	57, 204, 279, 538
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	304, 794
BstDEI	CTNAG	3 cut(s)	187, 231, 498
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	556, 784
BstH2I	RGCGCY	2 cut(s)	60, 207
BstHHI	GCGC	3 cut(s)	59, 77, 206
BstKTI	GATC	4 cut(s)	166, 396, 556, 832
BstMAI	GTCTC	3 cut(s)	256, 715, 761
BstMBI	GATC	4 cut(s)	163, 393, 553, 829
BstMCI	CGRYCG	2 cut(s)	34, 166
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 210, 312, 746, 833, 862
BstNSI	RCATGY	1 cut(s)	569
BstSFI	CTRYAG	2 cut(s)	684, 762
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	113, 181, 670, 698, 748, 758
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	33, 174, 792, 856
BtgI	CCRYGG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	556, 784
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	5 cut(s)	195, 511, 548, 942, 964
Cac8I	GCNNGC	2 cut(s)	304, 794
CaiI	CAGNNNCTG	2 cut(s)	91, 194
CfoI	GCGC	3 cut(s)	59, 77, 206
Cfr10I	RCCGGY	1 cut(s)	792
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	289, 295, 355
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	3 cut(s)	379, 566, 635
CviQI	GTAC	3 cut(s)	289, 295, 355
DdeI	CTNAG	3 cut(s)	187, 231, 498
DinI	GGCGCC	2 cut(s)	58, 205
DpnI	GATC	4 cut(s)	165, 395, 555, 831
DpnII	GATC	4 cut(s)	163, 393, 553, 829
DraIII	CACNNNGTG	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
EciI	GGCGGA	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	444, 582
EgeI	GGCGCC	2 cut(s)	58, 205
EheI	GGCGCC	2 cut(s)	58, 205
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	382, 569, 638
FatI	CATG	3 cut(s)	378, 565, 634
FbaI	TGATCA	1 cut(s)	553
FokI	GGATG	2 cut(s)	563, 791
FspBI	CTAG	2 cut(s)	662, 951
GlaI	GCGC	3 cut(s)	58, 76, 205
HaeII	RGCGCY	2 cut(s)	60, 207
HaeIII	GGCC	4 cut(s)	33, 174, 792, 856
HapII	CCGG	3 cut(s)	159, 198, 793
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	3 cut(s)	59, 77, 206
Hin1I	GRCGYC	4 cut(s)	57, 204, 279, 538
Hin1II	CATG	3 cut(s)	382, 569, 638
Hin6I	GCGC	3 cut(s)	57, 75, 204
HinP1I	GCGC	3 cut(s)	57, 75, 204
HincII	GTYRAC	3 cut(s)	13, 436, 813
HindII	GTYRAC	3 cut(s)	13, 436, 813
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	159, 198, 793
HphI	GGTGA	2 cut(s)	724, 920
Hpy166II	GTNNAC	4 cut(s)	13, 241, 436, 813
Hpy188I	TCNGA	6 cut(s)	273, 406, 463, 601, 655, 786
Hpy188III	TCNNGA	3 cut(s)	233, 497, 608
Hpy8I	GTNNAC	4 cut(s)	13, 241, 436, 813
Hpy99I	CGWCG	3 cut(s)	109, 281, 284
HpyAV	CCTTC	2 cut(s)	409, 606
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	249, 279
HpyCH4V	TGCA	7 cut(s)	241, 315, 565, 686, 746, 764, 935
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 210, 312, 746, 833, 862
HpyF3I	CTNAG	3 cut(s)	187, 231, 498
HpySE526I	ACGT	2 cut(s)	249, 279
Hsp92I	GRCGYC	4 cut(s)	57, 204, 279, 538
Hsp92II	CATG	3 cut(s)	382, 569, 638
HspAI	GCGC	3 cut(s)	57, 75, 204
KasI	GGCGCC	2 cut(s)	56, 203
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	163, 393, 553, 829
LmnI	GCTCC	5 cut(s)	125, 161, 274, 680, 758
Lsp1109I	GCAGC	6 cut(s)	113, 181, 670, 698, 748, 758
LweI	GCATC	2 cut(s)	727, 769
MaeI	CTAG	2 cut(s)	662, 951
MaeII	ACGT	2 cut(s)	249, 279
MalI	GATC	4 cut(s)	165, 395, 555, 831
MboI	GATC	4 cut(s)	163, 393, 553, 829
MboII	GAAGA	4 cut(s)	450, 536, 727, 730
MhlI	GDGCHC	2 cut(s)	122, 243
MluCI	AATT	4 cut(s)	124, 468, 640, 710
Mly113I	GGCGCC	2 cut(s)	57, 204
MlyI	GAGTC	4 cut(s)	75, 620, 953, 963
MnlI	CCTC	7 cut(s)	194, 196, 229, 361, 514, 846, 922
MroNI	GCCGGC	1 cut(s)	792
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	3 cut(s)	12, 372, 870
MspA1I	CMGCKG	3 cut(s)	44, 72, 136
MspI	CCGG	3 cut(s)	159, 198, 793
MwoI	GCNNNNNNNGC	6 cut(s)	203, 210, 312, 746, 833, 862
NaeI	GCCGGC	1 cut(s)	794
NarI	GGCGCC	2 cut(s)	57, 204
NdeII	GATC	4 cut(s)	163, 393, 553, 829
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	3 cut(s)	382, 569, 638
NlaIV	GGNNCC	4 cut(s)	58, 205, 420, 866
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	3 cut(s)	113, 255, 273
PdiI	GCCGGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	6 cut(s)	18, 130, 455, 489, 859, 903
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	4 cut(s)	74, 619, 952, 962
PluTI	GGCGCC	2 cut(s)	60, 207
PpsI	GAGTC	4 cut(s)	74, 619, 952, 962
PspN4I	GGNNCC	4 cut(s)	58, 205, 420, 866
PstI	CTGCAG	2 cut(s)	688, 766
PstNI	CAGNNNCTG	2 cut(s)	91, 194
PvuI	CGATCG	1 cut(s)	166
RgaI	GCGATCGC	1 cut(s)	166
RsaI	GTAC	3 cut(s)	290, 296, 356
RsaNI	GTAC	3 cut(s)	289, 295, 355
SaqAI	TTAA	3 cut(s)	12, 372, 870
Sau3AI	GATC	4 cut(s)	163, 393, 553, 829
SchI	GAGTC	4 cut(s)	75, 620, 953, 963
SduI	GDGCHC	2 cut(s)	122, 243
SfaAI	GCGATCGC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	727, 769
SfcI	CTRYAG	2 cut(s)	684, 762
SfoI	GGCGCC	2 cut(s)	58, 205
SfuI	TTCGAA	1 cut(s)	128
SgfI	GCGATCGC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	124, 468, 640, 710
SsiI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
SspDI	GGCGCC	2 cut(s)	56, 203
SspMI	CTAG	2 cut(s)	662, 951
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	252, 282
TaqI	TCGA	5 cut(s)	128, 179, 513, 589, 922
TasI	AATT	4 cut(s)	124, 468, 640, 710
TauI	GCSGC	4 cut(s)	36, 44, 57, 75
TfiI	GAWTC	6 cut(s)	18, 130, 455, 489, 859, 903
Tru1I	TTAA	3 cut(s)	12, 372, 870
Tru9I	TTAA	3 cut(s)	12, 372, 870
TscAI	CASTG	5 cut(s)	195, 511, 548, 942, 964
TseI	GCWGC	6 cut(s)	101, 194, 683, 686, 746, 761
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	3 cut(s)	30, 214, 342
TspRI	CASTG	5 cut(s)	195, 511, 548, 942, 964
VneI	GTGCAC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	2 cut(s)	662, 951
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.