Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Reverse (-)

47237999 .. 47241510

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGACCCTCCGCTCCCATTGCCGCTGCTCCTCCTCCTCCTCCACTCCCGATTCTATCCCCGCCGCCCAGCCTTCCCTCCTTGGAGGAAGCACCGCCGAGATTGTCCGCGTCCTCGGTGGTCCGGCTGTCGGAGATACACAGTCCAGATGCTTGAGATTGGCCGGTAAAAGCCCCTCCGAGGCGGTCGCCGTCCGGCAATTGCTTGGTCACCGCTTACCACTTGATGCACGGCAAGCCAAATCTGAATGGACCTTTCATTTTCAAGCTAACCAGAACCTGAACCACATATATTGCTATATACAGGATCTGCAGGCTTTGTACACCATACAGCTAACTCAGAAGCCGAAGAAGTATCATGATGGTTTCTTGCAACTAGCAATTACTGGGTCTCATGGAAAGCCGTTGCTGGCTTTGGAAAATCGGTTGAAGTTGACTAATTACAATGGGGAAGCATGCACTTCTGCTGCATTTTCAAAGGAGCAAGCTAGTGCGCTGGTGTTGCCCACTGCCAGATTTATCAATTCTTGTGATAAGGCGCAAATTCAATTGGCACCTGAGAAATGTTTTAGTTTTTCCTCTTTCTTAGTTGACTTGTTTAAAGTGGTAAGTGTTTGCAGGAGGTTCAAAGATCATGTTATGCAGCTTGAAGCCCCATTGAGAGGAGTGGCACCAATGTTGACGTGCCGAATGCCCATAAATGACTCTTTTTCCTTTTGTGTAGGGAAGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3

Protein Analysis

244

Amino Acids

26.78

Weight (kDa)

9.24

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	553, 670
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	111
AciI	CCGC	8 cut(s)	13, 25, 63, 66, 96, 109, 185, 214
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	543
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	131, 181, 662
AgsI	TTSAA	6 cut(s)	266, 430, 477, 548, 628, 650
AjiI	CACGTC	1 cut(s)	684
AluBI	AGCT	4 cut(s)	269, 334, 488, 646
AluI	AGCT	4 cut(s)	269, 334, 488, 646
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	2 cut(s)	280, 310
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	27, 467, 643
ApoI	RAATTY	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	496, 541
AspS9I	GGNCC	2 cut(s)	122, 252
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	122, 252
BanI	GGYRCC	2 cut(s)	553, 670
BbvI	GCAGC	3 cut(s)	14, 454, 655
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	3 cut(s)	176, 248, 388
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	377, 489
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	5 cut(s)	25, 28, 66, 468, 644
BlsI	GCNGC	5 cut(s)	26, 29, 67, 469, 645
Bme18I	GGWCC	2 cut(s)	122, 252
BmgBI	CACGTC	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	122, 252
BmiI	GGNNCC	2 cut(s)	555, 672
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	140, 217
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	82, 115, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 181, 662
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	82, 115, 180
BseLI	CCNNNNNNNGG	3 cut(s)	131, 181, 662
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	353, 549
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	5 cut(s)	22, 25, 28, 31, 678
BseXI	GCAGC	3 cut(s)	14, 454, 655
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	2 cut(s)	553, 670
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	125, 165, 196
BslI	CCNNNNNNNGG	3 cut(s)	131, 181, 662
BsmAI	GTCTC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	307, 631
BspACI	CCGC	8 cut(s)	13, 25, 63, 66, 96, 109, 185, 214
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	352, 550
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	555, 672
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	553, 670
BspTNI	GGTCTC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	82, 115, 180
BssMI	GATC	2 cut(s)	307, 631
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	5 cut(s)	237, 315, 411, 457, 486
BstDEI	CTNAG	3 cut(s)	339, 558, 586
BstEII	GGTNACC	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	496, 541
BstKTI	GATC	2 cut(s)	310, 634
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	307, 631
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 236, 502
BstNSI	RCATGY	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	14, 454, 655
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	684
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	5 cut(s)	237, 315, 411, 457, 486
CaiI	CAGNNNCTG	2 cut(s)	280, 310
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	496, 541
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	122, 252
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	4 cut(s)	359, 395, 456, 635
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	339, 558, 586
DpnI	GATC	2 cut(s)	309, 633
DpnII	GATC	2 cut(s)	307, 631
DraI	TTTAAA	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	122, 252
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	362, 398, 459, 638
FatI	CATG	4 cut(s)	358, 394, 455, 634
FauI	CCCGC	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	25, 28, 66, 468, 644
Fsp4HI	GCNGC	5 cut(s)	25, 28, 66, 468, 644
FspBI	CTAG	2 cut(s)	377, 489
GlaI	GCGC	2 cut(s)	495, 540
GluI	GCNGC	5 cut(s)	25, 28, 66, 468, 644
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	3 cut(s)	125, 165, 196
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	496, 541
Hin1II	CATG	4 cut(s)	362, 398, 459, 638
Hin6I	GCGC	2 cut(s)	494, 539
HinP1I	GCGC	2 cut(s)	494, 539
HincII	GTYRAC	4 cut(s)	6, 435, 592, 681
HindII	GTYRAC	4 cut(s)	6, 435, 592, 681
HinfI	GANTC	2 cut(s)	53, 704
HpaII	CCGG	3 cut(s)	125, 165, 196
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	5 cut(s)	6, 324, 435, 592, 681
Hpy188I	TCNGA	4 cut(s)	134, 181, 247, 342
Hpy188III	TCNNGA	3 cut(s)	50, 147, 359
Hpy8I	GTNNAC	5 cut(s)	6, 324, 435, 592, 681
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	683, 731
HpyCH4V	TGCA	7 cut(s)	230, 313, 373, 459, 470, 618, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 236, 502
HpyF3I	CTNAG	3 cut(s)	339, 558, 586
HpySE526I	ACGT	2 cut(s)	683, 731
Hsp92II	CATG	4 cut(s)	362, 398, 459, 638
HspAI	GCGC	2 cut(s)	494, 539
Kzo9I	GATC	2 cut(s)	307, 631
LmnI	GCTCC	3 cut(s)	20, 35, 481
Lsp1109I	GCAGC	3 cut(s)	14, 454, 655
LweI	GCATC	2 cut(s)	140, 217
MaeI	CTAG	2 cut(s)	377, 489
MaeII	ACGT	2 cut(s)	683, 731
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	309, 633
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	2 cut(s)	307, 631
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	2 cut(s)	200, 548
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	6 cut(s)	200, 381, 439, 523, 543, 548
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	112
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	3 cut(s)	125, 165, 196
MunI	CAATTG	2 cut(s)	200, 548
Mva1269I	GAATGC	1 cut(s)	696
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	21, 236, 502
NdeII	GATC	2 cut(s)	307, 631
NlaIII	CATG	4 cut(s)	362, 398, 459, 638
NlaIV	GGNNCC	2 cut(s)	555, 672
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	26, 29, 67, 469, 645
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	555, 672
PspPI	GGNCC	2 cut(s)	122, 252
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	2 cut(s)	280, 310
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	5 cut(s)	25, 28, 66, 468, 644
Sau3AI	GATC	2 cut(s)	307, 631
Sau96I	GGNCC	2 cut(s)	122, 252
SchI	GAGTC	1 cut(s)	698
SfaNI	GCATC	2 cut(s)	140, 217
SfcI	CTRYAG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	122, 252
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	6 cut(s)	200, 381, 439, 523, 543, 548
SsiI	CCGC	8 cut(s)	13, 25, 63, 66, 96, 109, 185, 214
SspMI	CTAG	2 cut(s)	377, 489
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	2 cut(s)	686, 734
TaqI	TCGA	1 cut(s)	5
TasI	AATT	6 cut(s)	200, 381, 439, 523, 543, 548
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	27, 68
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	27, 467, 643
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	122, 252
XapI	RAATTY	1 cut(s)	543
XceI	RCATGY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	377, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.