Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Forward (+)

966610 .. 969132

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAAGGGCTTCCACTCTCGCCTCCTTCCCCATCATCTCCCGATCCATCGCCACCCTCCACGGCGGCGCAACCGCCACGTCACCCTCCCACCGCCTTCTCCAGGTAGCTCTCTACAGCTCCGCCGGCTCTCATGGTCGCCGTCCCTGGTTCGAGTCATTTTCCGGCCGGAAGCTGGCCGTCGGCGTCGCCGGAACTATGGCTTCGGTGGCTGTTGCCACGTCGCTCGCTCAGGAAGTCCACGCCAAAGAGCCGCCTCCGGCTGAGCTCGTGCCTAAGGAGGTTGTGCTGTACCAGTACGAAGCTTGCCCTTTCTGCAACAAAGTGAAAGCATTCTTGGACTACTATGATATACCGTACAAAATTGTGGAGGTGAACCCACTCAGTAAGAAAGAGATCAAGTTTTCGGAGTATAAGAAGGTTCCGATATTGATGGTCGATGGGGAACAGCTAGTTGATTCATCAGATTTCCCTGACAGAGTACCGCAGAGAGTAGCAGTTTCTACCTCAGATGAGGATGATGAAGAGAAAAAGTGGCGCAAGTGGGTTGATAATCACCTGGTGCATATGCTATCACCAAACATATACCGAAATACATCTGAGGCCCTTGAGTCCTTTGACTATATCACAAGCAATGGTAATTTTAGTTACACAGAAAAAATTACAGTGAAGTATGCTGGTGCTGCAGCTATGTACTTTGTGTCTAAGAAACTGAAGAAGAAATATAACATTACTGATGAACGTGCATCCCTGTATGAAGCAGCAGAAACATGGGTTGATGCTTTAGATGGGCGGGAATTCCTTGGGGGGTCAAAACCTAATTTGGCTGATCTTGCTGTTTTTGGGGTGTTAAGACCTATCCGTTATTTGAGGTCTGGTAAAGATATGGTTGAGCACACACGCATAGGTGAATGGTACTCAAGAATGGAGCGTGCTGTAGGAGAGCCTTCAAGGATTAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3 Glutaredoxin

Protein Analysis

321

Amino Acids

36.1

Weight (kDa)

8.59

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	95 - 149	3.7e-10	Glutaredoxin
GST_N_3	PF13417	97 - 156	2.7e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	102 - 156	1.9e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	66, 75, 94, 123, 254, 485, 793
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	2 cut(s)	166, 177
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	6 cut(s)	293, 299, 359, 483, 695, 917
AfiI	CCNNNNNNNGG	2 cut(s)	103, 175
AgsI	TTSAA	1 cut(s)	951
AjiI	CACGTC	2 cut(s)	81, 222
AjnI	CCWGG	3 cut(s)	102, 146, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	7 cut(s)	110, 120, 175, 268, 305, 451, 689
AluI	AGCT	7 cut(s)	110, 120, 175, 268, 305, 451, 689
Alw21I	GWGCWC	2 cut(s)	270, 897
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	166, 177, 603
ApeKI	GCWGC	3 cut(s)	683, 686, 761
ApoI	RAATTY	1 cut(s)	797
Asp700I	GAANNNNTTC	2 cut(s)	10, 332
AspLEI	GCGC	2 cut(s)	71, 540
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	5 cut(s)	75, 385, 548, 567, 920
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	270, 897
BbvI	GCAGC	3 cut(s)	670, 698, 773
BccI	CCATC	5 cut(s)	41, 56, 427, 434, 782
BceAI	ACGGC	3 cut(s)	79, 126, 164
BciT130I	CCWGG	3 cut(s)	104, 148, 560
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	3 cut(s)	115, 684, 936
BisI	GCNGC	5 cut(s)	67, 254, 684, 687, 762
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	5 cut(s)	68, 255, 685, 688, 763
Bme1390I	CCNGG	3 cut(s)	104, 148, 560
BmgBI	CACGTC	2 cut(s)	81, 222
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	3 cut(s)	104, 148, 560
BmsI	GCATC	2 cut(s)	755, 769
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	629, 904
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	61, 146, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 175
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	3 cut(s)	104, 148, 560
BseDI	CCNNGG	3 cut(s)	61, 146, 802
BseGI	GGATG	2 cut(s)	523, 746
BseLI	CCNNNNNNNGG	2 cut(s)	103, 175
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	5 cut(s)	245, 255, 397, 522, 591
BseNI	ACTGG	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	670, 698, 773
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	168, 179, 605
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	270, 897
BsiSI	CCGG	5 cut(s)	126, 165, 169, 192, 260
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	103, 175
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	168, 179, 605
Bsp1286I	GDGCHC	2 cut(s)	270, 897
Bsp143I	GATC	3 cut(s)	44, 396, 829
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	7 cut(s)	66, 75, 94, 123, 254, 485, 793
BspANI	GGCC	3 cut(s)	168, 179, 605
BspCNI	CTCAG	5 cut(s)	244, 256, 396, 521, 592
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	61, 146, 802
BssMI	GATC	3 cut(s)	44, 396, 829
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	3 cut(s)	104, 148, 560
Bst4CI	ACNGT	2 cut(s)	357, 667
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	127, 177, 228, 307, 933
BstDEI	CTNAG	7 cut(s)	231, 264, 276, 383, 508, 600, 705
BstDSI	CCRYGG	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	523, 746
BstHHI	GCGC	2 cut(s)	71, 540
BstKTI	GATC	3 cut(s)	47, 399, 832
BstMBI	GATC	3 cut(s)	44, 396, 829
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 209, 315, 683, 833
BstNI	CCWGG	3 cut(s)	104, 148, 560
BstSCI	CCNGG	3 cut(s)	102, 146, 558
BstSFI	CTRYAG	3 cut(s)	115, 684, 936
BstV1I	GCAGC	3 cut(s)	670, 698, 773
BstZI	CGGCCG	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	168, 179, 605
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	2 cut(s)	81, 222
BtsCI	GGATG	2 cut(s)	523, 746
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	5 cut(s)	127, 177, 228, 307, 933
CfoI	GCGC	2 cut(s)	71, 540
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	604
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	558
Csp6I	GTAC	6 cut(s)	292, 298, 358, 482, 694, 916
CviAII	CATG	2 cut(s)	134, 771
CviQI	GTAC	6 cut(s)	292, 298, 358, 482, 694, 916
DdeI	CTNAG	7 cut(s)	231, 264, 276, 383, 508, 600, 705
DpnI	GATC	3 cut(s)	46, 398, 831
DpnII	GATC	3 cut(s)	44, 396, 829
DraIII	CACNNNGTG	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	166, 177
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	270
Eco52I	CGGCCG	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	734
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	3 cut(s)	102, 146, 558
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	802
FaeI	CATG	2 cut(s)	137, 774
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	133, 770
FauI	CCCGC	1 cut(s)	786
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	67, 254, 684, 687, 762
FokI	GGATG	2 cut(s)	530, 733
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	67, 254, 684, 687, 762
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	2 cut(s)	70, 539
GluI	GCNGC	5 cut(s)	67, 254, 684, 687, 762
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	168, 179, 605
HapII	CCGG	5 cut(s)	126, 165, 169, 192, 260
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	71, 540
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	137, 774
Hin6I	GCGC	2 cut(s)	69, 538
HinP1I	GCGC	2 cut(s)	69, 538
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	3 cut(s)	155, 458, 611
HpaII	CCGG	5 cut(s)	126, 165, 169, 192, 260
HphI	GGTGA	5 cut(s)	75, 385, 548, 567, 920
Hpy166II	GTNNAC	2 cut(s)	241, 376
Hpy188I	TCNGA	5 cut(s)	409, 426, 466, 511, 601
Hpy188III	TCNNGA	3 cut(s)	42, 233, 921
Hpy8I	GTNNAC	2 cut(s)	241, 376
Hpy99I	CGWCG	3 cut(s)	185, 191, 226
HpyAV	CCTTC	4 cut(s)	37, 107, 412, 957
HpyCH4III	ACNGT	2 cut(s)	357, 667
HpyCH4IV	ACGT	3 cut(s)	80, 221, 742
HpyCH4V	TGCA	4 cut(s)	318, 565, 686, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 209, 315, 683, 833
HpyF3I	CTNAG	7 cut(s)	231, 264, 276, 383, 508, 600, 705
HpySE526I	ACGT	3 cut(s)	80, 221, 742
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	137, 774
HspAI	GCGC	2 cut(s)	69, 538
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	44, 396, 829
LmnI	GCTCC	2 cut(s)	125, 928
Lsp1109I	GCAGC	3 cut(s)	670, 698, 773
LweI	GCATC	2 cut(s)	755, 769
MabI	ACCWGGT	1 cut(s)	558
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	3 cut(s)	80, 221, 742
MaeIII	GTNAC	2 cut(s)	81, 647
MalI	GATC	3 cut(s)	46, 398, 831
MboI	GATC	3 cut(s)	44, 396, 829
MboII	GAAGA	3 cut(s)	536, 727, 730
MhlI	GDGCHC	2 cut(s)	270, 897
MluCI	AATT	5 cut(s)	363, 640, 660, 797, 820
MlyI	GAGTC	2 cut(s)	164, 620
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	10, 332
MseI	TTAA	2 cut(s)	851, 957
MspI	CCGG	5 cut(s)	126, 165, 169, 192, 260
MspR9I	CCNGG	3 cut(s)	104, 148, 560
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	3 cut(s)	104, 148, 560
MwoI	GCNNNNNNNGC	5 cut(s)	126, 209, 315, 683, 833
NaeI	GCCGGC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	3 cut(s)	44, 396, 829
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	137, 774
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	10, 332
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	68, 255, 685, 688, 763
PleI	GAGTC	2 cut(s)	163, 619
PpsI	GAGTC	2 cut(s)	163, 619
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	102, 146, 558
PspGI	CCWGG	3 cut(s)	102, 146, 558
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	688
RsaI	GTAC	6 cut(s)	293, 299, 359, 483, 695, 917
RsaNI	GTAC	6 cut(s)	292, 298, 358, 482, 694, 916
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	851, 957
SatI	GCNGC	5 cut(s)	67, 254, 684, 687, 762
Sau3AI	GATC	3 cut(s)	44, 396, 829
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	2 cut(s)	164, 620
ScrFI	CCNGG	3 cut(s)	104, 148, 560
SduI	GDGCHC	2 cut(s)	270, 897
SexAI	ACCWGGT	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	755, 769
SfcI	CTRYAG	3 cut(s)	115, 684, 936
SmlI	CTYRAG	2 cut(s)	608, 919
SmoI	CTYRAG	2 cut(s)	608, 919
Sse9I	AATT	5 cut(s)	363, 640, 660, 797, 820
SsiI	CCGC	7 cut(s)	66, 75, 94, 123, 254, 485, 793
SspMI	CTAG	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	102, 146, 558
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	357, 667
TaiI	ACGT	3 cut(s)	83, 224, 745
TaqI	TCGA	2 cut(s)	153, 438
TasI	AATT	5 cut(s)	363, 640, 660, 797, 820
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	69, 256
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	851, 957
Tru9I	TTAA	2 cut(s)	851, 957
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	3 cut(s)	683, 686, 761
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	450, 537, 753, 771
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	1 cut(s)	672
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	797
XmnI	GAANNNNTTC	2 cut(s)	10, 332
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.