Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Reverse (-)

9960336 .. 9963165

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGAAGGGCTTCAACTCTCGCCTCATTCCCCATCCTCTCCCGATCCATCGCCACCCTTCACGGCTGCGCAACCGCCACCTCATCCTCCGCAAGCCACCGGCTTCTCCAGGTTGCTCTCTACACCACCGCCGGCAGCGCCGGCTCTCATGCTCGCCGTCCCTGGTCCGAGTCATTTTCCGGTCGCAAGCTGGCTTTCGGCGTCGCCGGAACCCTGGCTTCCGTGGCTGTAGCCACGTCACTCGCTCAGGAAGTCCACGCCAAAGAGCCGCCTCCGGCTGAGCTCGTGCCCAAGGAGGTTGTGCTGTACCAGTACGAAGCTTGCCCTTTCTGTAACAAAGTTAAAGCATTCCTGGACTACTATGATATACCGTACAAAATTGTGGAGGTCAACCCACTCAGCAAGAAAGAGATCAAGTTTTCGGAGTATAAGAAGGTTCCGATATTGATGGTGGATGGGGAACAGCTAGTTGATTCATCAGTTATAATTGATACCTTGACTGAGAAGATTCTTCCCGACAGAGTAGGGGAGAGAGTGGCCGTTTCTACCTCAAATGCGGATGATGAAGAGAAAAAGTGGCGCAAGTGGGTTGATAGTCACCTGGTGCATATGTTATCACCAAACATATACCGAAACACATCTGAGGCCCTTGAGTCCTTTGACTATATCACAAGCAATGGTAATTTCAGTTACACAGAAAAAATTACAGTGAAGTATGCTGGTGCTGCAGCTATGTACTTTGTGTCTAAGAAACTGAAGAAGAAATATAACATTACAGATGAACGTGCGTCCTTGTATGAAGCAGCAGAAACATGGGTCAATGCTCTAGATGGGCGGGAATTCCTTGGGGGATCCAAACCTAATTTGGCTGATCTAGCTGTTTTTGGGGTGTTAAGACCTATCCGTTATTTGAGATCTGGTAAAGATATGGTTGAGCATACACGCATAGGAGAATGGTACTCAAGAATGGAGCGTGCTGTAGGAGAGCCTTCAAGGATTAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3 Glutaredoxin

Protein Analysis

336

Amino Acids

37.38

Weight (kDa)

8.86

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	100 - 154	3.6e-10	Glutaredoxin
GST_N_3	PF13417	102 - 160	1.1e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	107 - 160	4.2e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	70
AciI	CCGC	6 cut(s)	75, 90, 129, 269, 557, 835
AclWI	GGATC	3 cut(s)	39, 846, 859
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	604
AfaI	GTAC	5 cut(s)	308, 314, 374, 737, 959
AgsI	TTSAA	2 cut(s)	15, 993
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	5 cut(s)	108, 161, 213, 351, 600
AluBI	AGCT	6 cut(s)	190, 283, 320, 466, 731, 878
AluI	AGCT	6 cut(s)	190, 283, 320, 466, 731, 878
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	3 cut(s)	39, 846, 859
AoxI	GGCC	2 cut(s)	537, 645
ApeKI	GCWGC	5 cut(s)	66, 135, 725, 728, 803
ApoI	RAATTY	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	71, 140, 582
AspS9I	GGNCC	2 cut(s)	165, 646
AsuHPI	GGTGA	2 cut(s)	590, 609
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	53, 147, 712, 740, 815
BccI	CCATC	5 cut(s)	41, 56, 442, 449, 824
BceAI	ACGGC	3 cut(s)	79, 141, 524
BciT130I	CCWGG	5 cut(s)	110, 163, 215, 353, 602
BfaI	CTAG	3 cut(s)	467, 827, 875
BfmI	CTRYAG	3 cut(s)	228, 726, 978
BfoI	RGCGCY	1 cut(s)	141
BglII	AGATCT	1 cut(s)	914
BisI	GCNGC	6 cut(s)	67, 136, 269, 726, 729, 804
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	6 cut(s)	68, 137, 270, 727, 730, 805
Bme1390I	CCNGG	5 cut(s)	110, 163, 215, 353, 602
Bme18I	GGWCC	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	165, 646
BmiI	GGNNCC	3 cut(s)	211, 438, 853
BmrFI	CCNGG	5 cut(s)	110, 163, 215, 353, 602
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	671, 946
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	161, 213, 222, 291, 844
BsaWI	WCCGGW	1 cut(s)	179
Bse118I	RCCGGY	3 cut(s)	99, 131, 140
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	682
BseBI	CCWGG	5 cut(s)	110, 163, 215, 353, 602
BseDI	CCNNGG	5 cut(s)	161, 213, 222, 291, 844
BseGI	GGATG	4 cut(s)	33, 83, 460, 565
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	5 cut(s)	260, 270, 412, 492, 633
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	5 cut(s)	53, 147, 712, 740, 815
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	539, 647
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	6 cut(s)	100, 132, 141, 180, 207, 275
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	539, 647
Bsp1286I	GDGCHC	2 cut(s)	285, 291
Bsp143I	GATC	5 cut(s)	44, 411, 851, 871, 914
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	6 cut(s)	75, 90, 129, 269, 557, 835
BspANI	GGCC	2 cut(s)	539, 647
BspCNI	CTCAG	5 cut(s)	259, 271, 411, 493, 634
BspLI	GGNNCC	3 cut(s)	211, 438, 853
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	3 cut(s)	39, 846, 859
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	3 cut(s)	99, 131, 140
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	3 cut(s)	99, 131, 140
BssECI	CCNNGG	5 cut(s)	161, 213, 222, 291, 844
BssMI	GATC	5 cut(s)	44, 411, 851, 871, 914
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	291, 844
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	5 cut(s)	110, 163, 215, 353, 602
Bst4CI	ACNGT	2 cut(s)	372, 709
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	8 cut(s)	94, 133, 142, 154, 188, 192, 322, 975
BstDEI	CTNAG	6 cut(s)	246, 279, 398, 501, 642, 747
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	4 cut(s)	33, 83, 460, 565
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	71, 140, 582
BstKTI	GATC	5 cut(s)	47, 414, 854, 874, 917
BstMBI	GATC	5 cut(s)	44, 411, 851, 871, 914
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 141, 224, 725, 875
BstNI	CCWGG	5 cut(s)	110, 163, 215, 353, 602
BstSCI	CCNGG	5 cut(s)	108, 161, 213, 351, 600
BstSFI	CTRYAG	3 cut(s)	228, 726, 978
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	53, 147, 712, 740, 815
BstX2I	RGATCY	2 cut(s)	851, 914
BstYI	RGATCY	2 cut(s)	851, 914
BsuRI	GGCC	2 cut(s)	539, 647
BtgI	CCRYGG	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	33, 83, 460, 565
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	8 cut(s)	94, 133, 142, 154, 188, 192, 322, 975
CfoI	GCGC	3 cut(s)	71, 140, 582
Cfr10I	RCCGGY	3 cut(s)	99, 131, 140
Cfr13I	GGNCC	2 cut(s)	165, 646
CseI	GACGC	2 cut(s)	190, 777
CsiI	ACCWGGT	1 cut(s)	600
Csp6I	GTAC	5 cut(s)	307, 313, 373, 736, 958
CviAII	CATG	2 cut(s)	149, 813
CviQI	GTAC	5 cut(s)	307, 313, 373, 736, 958
DdeI	CTNAG	6 cut(s)	246, 279, 398, 501, 642, 747
DpnI	GATC	5 cut(s)	46, 413, 853, 873, 916
DpnII	GATC	5 cut(s)	44, 411, 851, 871, 914
DraIII	CACNNNGTG	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	291, 844
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	5 cut(s)	108, 161, 213, 351, 600
EcoT14I	CCWWGG	2 cut(s)	291, 844
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	291, 844
FaeI	CATG	2 cut(s)	152, 816
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	2 cut(s)	148, 812
FauI	CCCGC	1 cut(s)	828
FauNDI	CATATG	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	67, 136, 269, 726, 729, 804
FokI	GGATG	4 cut(s)	20, 70, 467, 572
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	6 cut(s)	67, 136, 269, 726, 729, 804
FspBI	CTAG	3 cut(s)	467, 827, 875
FspI	TGCGCA	1 cut(s)	70
GlaI	GCGC	3 cut(s)	70, 139, 581
GluI	GCNGC	6 cut(s)	67, 136, 269, 726, 729, 804
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	539, 647
HapII	CCGG	6 cut(s)	100, 132, 141, 180, 207, 275
HgaI	GACGC	2 cut(s)	190, 777
HhaI	GCGC	3 cut(s)	71, 140, 582
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	152, 816
Hin6I	GCGC	3 cut(s)	69, 138, 580
HinP1I	GCGC	3 cut(s)	69, 138, 580
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	4 cut(s)	170, 473, 508, 653
HpaII	CCGG	6 cut(s)	100, 132, 141, 180, 207, 275
HphI	GGTGA	2 cut(s)	590, 609
Hpy166II	GTNNAC	2 cut(s)	256, 391
Hpy188I	TCNGA	4 cut(s)	169, 424, 441, 643
Hpy188III	TCNNGA	5 cut(s)	42, 248, 515, 827, 963
Hpy8I	GTNNAC	2 cut(s)	256, 391
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	68, 427, 999
HpyCH4III	ACNGT	2 cut(s)	372, 709
HpyCH4IV	ACGT	2 cut(s)	236, 784
HpyCH4V	TGCA	2 cut(s)	607, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 141, 224, 725, 875
HpyF3I	CTNAG	6 cut(s)	246, 279, 398, 501, 642, 747
HpySE526I	ACGT	2 cut(s)	236, 784
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	152, 816
HspAI	GCGC	3 cut(s)	69, 138, 580
KroI	GCCGGC	2 cut(s)	131, 140
KroNI	GCCGGC	2 cut(s)	133, 142
Kzo9I	GATC	5 cut(s)	44, 411, 851, 871, 914
LmnI	GCTCC	1 cut(s)	970
Lsp1109I	GCAGC	5 cut(s)	53, 147, 712, 740, 815
MabI	ACCWGGT	1 cut(s)	600
MaeI	CTAG	3 cut(s)	467, 827, 875
MaeII	ACGT	2 cut(s)	236, 784
MaeIII	GTNAC	4 cut(s)	237, 332, 596, 689
MalI	GATC	5 cut(s)	46, 413, 853, 873, 916
MboI	GATC	5 cut(s)	44, 411, 851, 871, 914
MboII	GAAGA	5 cut(s)	503, 517, 578, 769, 772
MflI	RGATCY	2 cut(s)	851, 914
MhlI	GDGCHC	2 cut(s)	285, 291
MluCI	AATT	6 cut(s)	378, 486, 682, 702, 839, 862
MlyI	GAGTC	2 cut(s)	179, 662
MnlI	CCTC	9 cut(s)	34, 47, 91, 97, 282, 289, 379, 559, 637
MroNI	GCCGGC	2 cut(s)	131, 140
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	3 cut(s)	342, 893, 999
MspI	CCGG	6 cut(s)	100, 132, 141, 180, 207, 275
MspR9I	CCNGG	5 cut(s)	110, 163, 215, 353, 602
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	5 cut(s)	110, 163, 215, 353, 602
MwoI	GCNNNNNNNGC	5 cut(s)	137, 141, 224, 725, 875
NaeI	GCCGGC	2 cut(s)	133, 142
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	5 cut(s)	44, 411, 851, 871, 914
NgoMIV	GCCGGC	2 cut(s)	131, 140
NlaIII	CATG	2 cut(s)	152, 816
NlaIV	GGNNCC	3 cut(s)	211, 438, 853
NmuCI	GTSAC	2 cut(s)	237, 596
NsbI	TGCGCA	1 cut(s)	70
PctI	GAATGC	1 cut(s)	347
PdiI	GCCGGC	2 cut(s)	133, 142
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	473, 508
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	6 cut(s)	68, 137, 270, 727, 730, 805
PleI	GAGTC	2 cut(s)	178, 661
PpsI	GAGTC	2 cut(s)	178, 661
PsiI	TTATAA	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	5 cut(s)	108, 161, 213, 351, 600
PspGI	CCWGG	5 cut(s)	108, 161, 213, 351, 600
PspN4I	GGNNCC	3 cut(s)	211, 438, 853
PspPI	GGNCC	2 cut(s)	165, 646
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	851, 914
RsaI	GTAC	5 cut(s)	308, 314, 374, 737, 959
RsaNI	GTAC	5 cut(s)	307, 313, 373, 736, 958
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	342, 893, 999
SatI	GCNGC	6 cut(s)	67, 136, 269, 726, 729, 804
Sau3AI	GATC	5 cut(s)	44, 411, 851, 871, 914
Sau96I	GGNCC	2 cut(s)	165, 646
SchI	GAGTC	2 cut(s)	179, 662
ScrFI	CCNGG	5 cut(s)	110, 163, 215, 353, 602
SduI	GDGCHC	2 cut(s)	285, 291
SexAI	ACCWGGT	1 cut(s)	600
SfcI	CTRYAG	3 cut(s)	228, 726, 978
SinI	GGWCC	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	650, 961
SmoI	CTYRAG	2 cut(s)	650, 961
Sse9I	AATT	6 cut(s)	378, 486, 682, 702, 839, 862
SsiI	CCGC	6 cut(s)	75, 90, 129, 269, 557, 835
SspMI	CTAG	3 cut(s)	467, 827, 875
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	5 cut(s)	108, 161, 213, 351, 600
StyI	CCWWGG	2 cut(s)	291, 844
TaaI	ACNGT	2 cut(s)	372, 709
TaiI	ACGT	2 cut(s)	239, 787
TasI	AATT	6 cut(s)	378, 486, 682, 702, 839, 862
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	473, 508
Tru1I	TTAA	3 cut(s)	342, 893, 999
Tru9I	TTAA	3 cut(s)	342, 893, 999
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	2 cut(s)	237, 596
TseI	GCWGC	5 cut(s)	66, 135, 725, 728, 803
Tsp45I	GTSAC	2 cut(s)	237, 596
TspDTI	ATGAA	4 cut(s)	465, 579, 795, 813
TspGWI	ACGGA	2 cut(s)	211, 893
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	839
XbaI	TCTAGA	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	3 cut(s)	467, 827, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.