Rh6CG447000

Prostaglandin E synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003258
Physical Location & Seq
Forward (+)
62506663 .. 62508893
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG447000.1

Sequence Viewer

Length: 966 bp
ATGAGAAGGGTTAACGGAATCGCTTTGCTCGGCCGCACCGCCGCTGGTATTGGCGGCGCCACCAGAGTCAGCGGCGCAACTCCACAGCGACTGGTTCAAGCAGCGACGATAGGCTCGTGCTCGAATTCGAATCCGCTGTGGTTCAGTCGTCGAAGCTCCGGCGATCGCTTTGGCCTATCGAAACCCTCAGTGGCTGCCGGAGGCGCCAAGTGCTTCTCTACTTCCGTGGCTCAGGAGGTGCACTCCCACGTCTCCGCCGATAAGTTCGCTCCCAACGACGTCGTTCTGTACCAGTACGAAGCCTGCCCTTTCTGCAACAAGGTTAGAGCATTTTTGGACTATAATAACATTCCGTACAAAGTTATGGAGGTTAATCCCATGAGCAAAAAGGAGATCAAATGGTCTGATTACAAGAAGGTGCCGATACTGAAAGTTGACGATGAACAGATGGTGGATTCTTCAGATATAATTGATAAGCTATTCCAAAGAATCAATCCTGAGAACAGTGTTGTTGATAGTGAGGAAGAAAAGAAGTGGCGCCAGTGGGTGGATGATCACTTGGTGCATGTTTTATCACCAAACATATATCGAACTCCTTCAGAAGCTCTCGAGTCATTTGATTATATAACCAGTCACGGGAATTTCAGTTTATCCGAAAGGCTAGTAGCCAAGTATGGTGGAGCTGCAGCAATGTATTTTGTATCAAAAAAATTGAAGAAGAGACACAATATCACCGATGCTCGTGCAGCTCTATATGGAGCTGCAGAGACTTGGGTGGATGCTCTGAAAGGCCGGCAGTTTCTTGGTGGGTCAACTCCTAACTTGGCTGATCTTGCTGTATTTGGTGTTTTGAGGCCAATTCGGCACCTTAAATCTGGCAAAGAAATGGTGGAGAACACCCGAATCGGTGAATGGTATAGTCGAATGGAGGGTGCGGTGGGAGAGTCTGCTAGAGTCAATGCCTAA

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

9.2

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 94 - 148 1.8e-09 Glutaredoxin
GST_N_3 PF13417 96 - 165 9.2e-16 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 101 - 160 1.6e-08 Glutathione S-transferase, N-terminal domain
GST_N_4 PF17172 103 - 191 4.8e-08 Glutathione S-transferase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 5 cut(s) 56, 203, 418, 537, 864
AccB7I CCANNNNNTGG 1 cut(s) 547
AciI CCGC 8 cut(s) 34, 39, 42, 54, 72, 134, 255, 935
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 2 cut(s) 124, 640
AcuI CTGAAG 2 cut(s) 444, 582
AcyI GRCGYC 4 cut(s) 57, 204, 279, 538
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 3 cut(s) 290, 296, 356
AfiI CCNNNNNNNGG 2 cut(s) 547, 636
AgsI TTSAA 2 cut(s) 98, 715
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 6 cut(s) 156, 478, 605, 683, 749, 761
AluI AGCT 6 cut(s) 156, 478, 605, 683, 749, 761
Alw21I GWGCWC 2 cut(s) 122, 243
Alw26I GTCTC 3 cut(s) 256, 715, 761
Alw44I GTGCAC 1 cut(s) 239
AlwNI CAGNNNCTG 2 cut(s) 91, 194
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 4 cut(s) 31, 172, 790, 854
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 6 cut(s) 101, 194, 683, 686, 746, 761
ApoI RAATTY 2 cut(s) 124, 640
AsiSI GCGATCGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 595
AspLEI GCGC 4 cut(s) 59, 77, 206, 540
AsuHPI GGTGA 3 cut(s) 567, 724, 920
AsuII TTCGAA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 243
BanI GGYRCC 5 cut(s) 56, 203, 418, 537, 864
BauI CACGAG 2 cut(s) 115, 741
Bbv12I GWGCWC 2 cut(s) 122, 243
BbvI GCAGC 6 cut(s) 113, 181, 670, 698, 748, 758
BccI CCATC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 3 cut(s) 256, 715, 761
BfaI CTAG 2 cut(s) 662, 951
BfmI CTRYAG 2 cut(s) 684, 762
BfoI RGCGCY 3 cut(s) 60, 207, 541
BglI GCCNNNNNGGC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 608
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 5 cut(s) 58, 205, 420, 539, 866
BmsI GCATC 2 cut(s) 727, 769
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 128
BsaHI GRCGYC 4 cut(s) 57, 204, 279, 538
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 636
Bse118I RCCGGY 1 cut(s) 792
Bse1I ACTGG 4 cut(s) 96, 292, 541, 630
Bse3DI GCAATG 1 cut(s) 696
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 556, 784
BseLI CCNNNNNNNGG 2 cut(s) 547, 636
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 201, 245, 489
BseNI ACTGG 4 cut(s) 96, 292, 541, 630
BseSI GKGCMC 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 6 cut(s) 113, 181, 670, 698, 748, 758
BsgI GTGCAG 1 cut(s) 765
Bsh1285I CGRYCG 2 cut(s) 34, 166
BshFI GGCC 4 cut(s) 33, 174, 792, 856
BshNI GGYRCC 5 cut(s) 56, 203, 418, 537, 864
BsiEI CGRYCG 2 cut(s) 34, 166
BsiHKAI GWGCWC 2 cut(s) 122, 243
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 3 cut(s) 159, 198, 793
BslI CCNNNNNNNGG 2 cut(s) 547, 636
BsmAI GTCTC 3 cut(s) 256, 715, 761
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 4 cut(s) 33, 174, 792, 856
BsoBI CYCGRG 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 122, 243
Bsp143I GATC 4 cut(s) 163, 393, 553, 829
BspACI CCGC 8 cut(s) 34, 39, 42, 54, 72, 134, 255, 935
BspANI GGCC 4 cut(s) 33, 174, 792, 856
BspCNI CTCAG 3 cut(s) 200, 244, 490
BspLI GGNNCC 5 cut(s) 58, 205, 420, 539, 866
BspMAI CTGCAG 2 cut(s) 688, 766
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 5 cut(s) 56, 203, 418, 537, 864
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 792
BsrI ACTGG 4 cut(s) 96, 292, 541, 630
BssAI RCCGGY 1 cut(s) 792
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 4 cut(s) 163, 393, 553, 829
BssNI GRCGYC 4 cut(s) 57, 204, 279, 538
BssSI CACGAG 2 cut(s) 115, 741
Bst2BI CACGAG 2 cut(s) 115, 741
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 1 cut(s) 713
BstACI GRCGYC 4 cut(s) 57, 204, 279, 538
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 304, 794
BstDEI CTNAG 3 cut(s) 187, 231, 498
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 556, 784
BstH2I RGCGCY 3 cut(s) 60, 207, 541
BstHHI GCGC 4 cut(s) 59, 77, 206, 540
BstKTI GATC 4 cut(s) 166, 396, 556, 832
BstMAI GTCTC 3 cut(s) 256, 715, 761
BstMBI GATC 4 cut(s) 163, 393, 553, 829
BstMCI CGRYCG 2 cut(s) 34, 166
BstMWI GCNNNNNNNGC 6 cut(s) 203, 210, 312, 746, 833, 862
BstNSI RCATGY 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 684, 762
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 6 cut(s) 113, 181, 670, 698, 748, 758
BstZI CGGCCG 1 cut(s) 31
BsuRI GGCC 4 cut(s) 33, 174, 792, 856
BtgI CCRYGG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 556, 784
BtsIMutI CAGTG 3 cut(s) 195, 511, 548
Cac8I GCNNGC 2 cut(s) 304, 794
CaiI CAGNNNCTG 2 cut(s) 91, 194
CfoI GCGC 4 cut(s) 59, 77, 206, 540
Cfr10I RCCGGY 1 cut(s) 792
Csp6I GTAC 3 cut(s) 289, 295, 355
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviAII CATG 2 cut(s) 379, 566
CviQI GTAC 3 cut(s) 289, 295, 355
DdeI CTNAG 3 cut(s) 187, 231, 498
DinI GGCGCC 3 cut(s) 58, 205, 539
DpnI GATC 4 cut(s) 165, 395, 555, 831
DpnII GATC 4 cut(s) 163, 393, 553, 829
DraIII CACNNNGTG 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
EciI GGCGGA 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 444, 582
Eco88I CYCGRG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 124
EgeI GGCGCC 3 cut(s) 58, 205, 539
EheI GGCGCC 3 cut(s) 58, 205, 539
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 382, 569
FatI CATG 2 cut(s) 378, 565
FbaI TGATCA 1 cut(s) 553
FokI GGATG 2 cut(s) 563, 791
FspBI CTAG 2 cut(s) 662, 951
GlaI GCGC 4 cut(s) 58, 76, 205, 539
HaeII RGCGCY 3 cut(s) 60, 207, 541
HaeIII GGCC 4 cut(s) 33, 174, 792, 856
HapII CCGG 3 cut(s) 159, 198, 793
HhaI GCGC 4 cut(s) 59, 77, 206, 540
Hin1I GRCGYC 4 cut(s) 57, 204, 279, 538
Hin1II CATG 2 cut(s) 382, 569
Hin6I GCGC 4 cut(s) 57, 75, 204, 538
HinP1I GCGC 4 cut(s) 57, 75, 204, 538
HincII GTYRAC 3 cut(s) 13, 436, 813
HindII GTYRAC 3 cut(s) 13, 436, 813
HinfI GANTC 9 cut(s) 18, 66, 130, 455, 489, 611, 903, 944, 954
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 159, 198, 793
HphI GGTGA 3 cut(s) 567, 724, 920
Hpy166II GTNNAC 4 cut(s) 13, 241, 436, 813
Hpy188I TCNGA 5 cut(s) 406, 463, 601, 655, 786
Hpy188III TCNNGA 3 cut(s) 233, 497, 608
Hpy8I GTNNAC 4 cut(s) 13, 241, 436, 813
Hpy99I CGWCG 4 cut(s) 109, 153, 281, 284
HpyAV CCTTC 2 cut(s) 409, 606
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 2 cut(s) 249, 279
HpyCH4V TGCA 6 cut(s) 241, 315, 565, 686, 746, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 210, 312, 746, 833, 862
HpyF3I CTNAG 3 cut(s) 187, 231, 498
HpySE526I ACGT 2 cut(s) 249, 279
Hsp92I GRCGYC 4 cut(s) 57, 204, 279, 538
Hsp92II CATG 2 cut(s) 382, 569
HspAI GCGC 4 cut(s) 57, 75, 204, 538
KasI GGCGCC 3 cut(s) 56, 203, 537
KroI GCCGGC 1 cut(s) 792
KroNI GCCGGC 1 cut(s) 794
Ksp22I TGATCA 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 163, 393, 553, 829
LmnI GCTCC 4 cut(s) 161, 274, 680, 758
Lsp1109I GCAGC 6 cut(s) 113, 181, 670, 698, 748, 758
LweI GCATC 2 cut(s) 727, 769
MaeI CTAG 2 cut(s) 662, 951
MaeII ACGT 2 cut(s) 249, 279
MaeIII GTNAC 1 cut(s) 632
MalI GATC 4 cut(s) 165, 395, 555, 831
MboI GATC 4 cut(s) 163, 393, 553, 829
MboII GAAGA 4 cut(s) 450, 536, 727, 730
MhlI GDGCHC 2 cut(s) 122, 243
MluCI AATT 5 cut(s) 124, 468, 640, 710, 858
Mly113I GGCGCC 3 cut(s) 57, 204, 538
MlyI GAGTC 4 cut(s) 75, 620, 953, 963
MnlI CCTC 7 cut(s) 194, 196, 229, 361, 514, 846, 922
MroNI GCCGGC 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 595
MseI TTAA 3 cut(s) 12, 372, 870
MspA1I CMGCKG 3 cut(s) 44, 72, 136
MspI CCGG 3 cut(s) 159, 198, 793
MwoI GCNNNNNNNGC 6 cut(s) 203, 210, 312, 746, 833, 862
NaeI GCCGGC 1 cut(s) 794
NarI GGCGCC 3 cut(s) 57, 204, 538
NdeII GATC 4 cut(s) 163, 393, 553, 829
NgoMIV GCCGGC 1 cut(s) 792
NlaIII CATG 2 cut(s) 382, 569
NlaIV GGNNCC 5 cut(s) 58, 205, 420, 539, 866
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 632
NspI RCATGY 1 cut(s) 569
NspV TTCGAA 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 608
PcsI WCGNNNNNNNCGW 3 cut(s) 113, 255, 273
PdiI GCCGGC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 595
PfeI GAWTC 5 cut(s) 18, 130, 455, 489, 903
PflMI CCANNNNNTGG 1 cut(s) 547
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 4 cut(s) 74, 619, 952, 962
PluTI GGCGCC 3 cut(s) 60, 207, 541
PpsI GAGTC 4 cut(s) 74, 619, 952, 962
PspN4I GGNNCC 5 cut(s) 58, 205, 420, 539, 866
PstI CTGCAG 2 cut(s) 688, 766
PstNI CAGNNNCTG 2 cut(s) 91, 194
PvuI CGATCG 1 cut(s) 166
RgaI GCGATCGC 1 cut(s) 166
RsaI GTAC 3 cut(s) 290, 296, 356
RsaNI GTAC 3 cut(s) 289, 295, 355
SaqAI TTAA 3 cut(s) 12, 372, 870
Sau3AI GATC 4 cut(s) 163, 393, 553, 829
SchI GAGTC 4 cut(s) 75, 620, 953, 963
SduI GDGCHC 2 cut(s) 122, 243
SfaAI GCGATCGC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 727, 769
SfcI CTRYAG 2 cut(s) 684, 762
SfoI GGCGCC 3 cut(s) 58, 205, 539
Sfr274I CTCGAG 1 cut(s) 608
SfuI TTCGAA 1 cut(s) 128
SgfI GCGATCGC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 5 cut(s) 124, 468, 640, 710, 858
SsiI CCGC 8 cut(s) 34, 39, 42, 54, 72, 134, 255, 935
SspDI GGCGCC 3 cut(s) 56, 203, 537
SspMI CTAG 2 cut(s) 662, 951
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 2 cut(s) 252, 282
TaqI TCGA 7 cut(s) 122, 128, 151, 179, 589, 609, 922
TasI AATT 5 cut(s) 124, 468, 640, 710, 858
TauI GCSGC 4 cut(s) 36, 44, 57, 75
TfiI GAWTC 5 cut(s) 18, 130, 455, 489, 903
Tru1I TTAA 3 cut(s) 12, 372, 870
Tru9I TTAA 3 cut(s) 12, 372, 870
TscAI CASTG 3 cut(s) 195, 511, 548
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 6 cut(s) 101, 194, 683, 686, 746, 761
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 3 cut(s) 30, 214, 342
TspRI CASTG 3 cut(s) 195, 511, 548
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 239
XapI RAATTY 2 cut(s) 124, 640
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 595
XspI CTAG 2 cut(s) 662, 951
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.