Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Reverse (-)

17753357 .. 17757304

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGAAGGGCTTCAACTCTCGCCTCATTCAACGTCCTCTCCCGATCTCTCGCCACCGTTCACGGCGGCGCCGTTGCCACGTCAGCCTCCCCCAGCCACAGTCTTCTCCAGGTGGCTCTCTACGGTACCTCCAGCACCACCGGTCCTCATGTTCGTCGTCGGTGGTTCGATTCATTTTCCGGCGGTCCAGCTGGCAAGCTGGCTATTGGCGTAGCTGGAACTCTGGCTTCGGTCGCTGTTGCCTCGTCACTCACTCAGGAGGTCTATGCCAAAGAGCCGCCTCCGGCTGAGCTTGTTCCAAAGGACGTCGTGCTATACCAGTATGAAGCCTGCCCTTTCTGCAACAAAGTTAAAGCATTCTTGGACTACCACGATATACCCTACAAAATTGTGGAGGTCAACCCACTTAGTAAGAAAGAGATCAAATGGTCTGATTATAAGAAGGTTCCTATATTGATGGTGGATGGGGAACAGCTGGTTGACTCATCAGCTATAATTGATAAGTTGAATGACAAAATTGTTCCTGAGAGAGTAGCCGCCCCTTCCTCAAATGATGATGAAGAGAAAAAGTGGCGCCAGTGGGTTGATAATCACTTGGTGCATATGTTATCACCAAACATATACCGAAATACATCTGAGGCCCTTGAATCCTTTGACTATATAACAAGCAATGGTAATTTTAGCTACACAGAAAAATTTACAGTGAAGTATGCTGGTGCTGCGGCTATGTACTTTGTGTCAAAGAAACTGAAGAAGAAATATAATATTACGGATGAACGTGCATCCCTGTATGAAGCAGCAGAAACATGGGTTAATGCTCTTAATGGGCGGGACTTTCTTGGGGGCTCCAAACCTAATATGGCCGACCTTGCTGTTTTTGGGGTGCTAAGACCAATTCGTTATTTGAGGTCTGGTAAAGATATGGTGGAGCACACACGCATAGGTGAATGGTACTCAAGAATGGAGCGTGCCGTTGGAGAGTCTGCAAGGATTAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3 Glutaredoxin

Protein Analysis

334

Amino Acids

37.0

Weight (kDa)

9.03

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AatII	GACGTC	1 cut(s)	309
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	3 cut(s)	68, 125, 573
AciI	CCGC	6 cut(s)	66, 183, 278, 537, 722, 829
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	770
AcyI	GRCGYC	3 cut(s)	69, 306, 574
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	3 cut(s)	127, 731, 953
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	15, 31, 508, 647
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	191, 199, 215, 292, 475, 491, 684
AluI	AGCT	7 cut(s)	191, 199, 215, 292, 475, 491, 684
Alw21I	GWGCWC	1 cut(s)	933
AoxI	GGCC	2 cut(s)	639, 861
ApeKI	GCWGC	2 cut(s)	719, 797
ApoI	RAATTY	1 cut(s)	695
AsiGI	ACCGGT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	71, 576
AspS9I	GGNCC	3 cut(s)	143, 185, 640
AsuHPI	GGTGA	2 cut(s)	603, 956
AvaII	GGWCC	2 cut(s)	143, 185
BanI	GGYRCC	3 cut(s)	68, 125, 573
BanII	GRGCYC	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	706, 809
BccI	CCATC	2 cut(s)	451, 458
BceAI	ACGGC	3 cut(s)	56, 79, 956
BciT130I	CCWGG	1 cut(s)	110
BfoI	RGCGCY	2 cut(s)	72, 577
BisI	GCNGC	6 cut(s)	67, 278, 537, 720, 723, 798
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	68, 279, 538, 721, 724, 799
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	143, 185
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	143, 185, 640
BmiI	GGNNCC	5 cut(s)	70, 127, 447, 575, 847
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	791
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	92, 115
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	940
BsaHI	GRCGYC	3 cut(s)	69, 306, 574
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 113, 143
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	319, 577
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	3 cut(s)	469, 778, 782
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	4 cut(s)	269, 279, 516, 627
BseNI	ACTGG	2 cut(s)	319, 577
BseXI	GCAGC	2 cut(s)	706, 809
BseYI	CCCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	641, 863
BshNI	GGYRCC	3 cut(s)	68, 125, 573
BshTI	ACCGGT	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	933
BsiSI	CCGG	3 cut(s)	141, 180, 284
BslFI	GGGAC	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	641, 863
Bsp1286I	GDGCHC	2 cut(s)	848, 933
Bsp143I	GATC	2 cut(s)	44, 420
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	6 cut(s)	66, 183, 278, 537, 722, 829
BspANI	GGCC	2 cut(s)	641, 863
BspCNI	CTCAG	4 cut(s)	268, 280, 517, 628
BspLI	GGNNCC	5 cut(s)	70, 127, 447, 575, 847
BspT107I	GGYRCC	3 cut(s)	68, 125, 573
BsrDI	GCAATG	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	319, 577
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	2 cut(s)	44, 420
BssNI	GRCGYC	3 cut(s)	69, 306, 574
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	58, 101, 125, 703
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	3 cut(s)	69, 306, 574
BstC8I	GCNNGC	5 cut(s)	193, 197, 201, 331, 969
BstDEI	CTNAG	6 cut(s)	255, 288, 407, 525, 636, 887
BstF5I	GGATG	3 cut(s)	469, 778, 782
BstH2I	RGCGCY	2 cut(s)	72, 577
BstHHI	GCGC	2 cut(s)	71, 576
BstKTI	GATC	2 cut(s)	47, 423
BstMBI	GATC	2 cut(s)	44, 420
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 233, 339, 719, 869
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	706, 809
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	641, 863
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	469, 778, 782
BtsIMutI	CAGTG	2 cut(s)	584, 708
Cac8I	GCNNGC	5 cut(s)	193, 197, 201, 331, 969
CfoI	GCGC	2 cut(s)	71, 576
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	143, 185, 640
Csp6I	GTAC	3 cut(s)	126, 730, 952
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	2 cut(s)	149, 807
CviQI	GTAC	3 cut(s)	126, 730, 952
DdeI	CTNAG	6 cut(s)	255, 288, 407, 525, 636, 887
DinI	GGCGCC	2 cut(s)	70, 575
DpnI	GATC	2 cut(s)	46, 422
DpnII	GATC	2 cut(s)	44, 420
DraIII	CACNNNGTG	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	848
Eco47I	GGWCC	2 cut(s)	143, 185
Eco57I	CTGAAG	1 cut(s)	770
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	848
EgeI	GGCGCC	2 cut(s)	70, 575
EheI	GGCGCC	2 cut(s)	70, 575
FaeI	CATG	2 cut(s)	152, 810
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	2 cut(s)	148, 806
FauI	CCCGC	1 cut(s)	822
FauNDI	CATATG	1 cut(s)	603
Fnu4HI	GCNGC	6 cut(s)	67, 278, 537, 720, 723, 798
FokI	GGATG	3 cut(s)	476, 769, 785
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	6 cut(s)	67, 278, 537, 720, 723, 798
GlaI	GCGC	2 cut(s)	70, 575
GluI	GCNGC	6 cut(s)	67, 278, 537, 720, 723, 798
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	2 cut(s)	92, 115
HaeII	RGCGCY	2 cut(s)	72, 577
HaeIII	GGCC	2 cut(s)	641, 863
HapII	CCGG	3 cut(s)	141, 180, 284
HhaI	GCGC	2 cut(s)	71, 576
Hin1I	GRCGYC	3 cut(s)	69, 306, 574
Hin1II	CATG	2 cut(s)	152, 810
Hin6I	GCGC	2 cut(s)	69, 574
HinP1I	GCGC	2 cut(s)	69, 574
HincII	GTYRAC	2 cut(s)	400, 481
HindII	GTYRAC	2 cut(s)	400, 481
HinfI	GANTC	4 cut(s)	170, 482, 647, 980
HpaII	CCGG	3 cut(s)	141, 180, 284
HphI	GGTGA	2 cut(s)	603, 956
Hpy166II	GTNNAC	3 cut(s)	61, 400, 481
Hpy188I	TCNGA	2 cut(s)	433, 637
Hpy188III	TCNNGA	4 cut(s)	42, 257, 524, 957
Hpy8I	GTNNAC	3 cut(s)	61, 400, 481
Hpy99I	CGWCG	3 cut(s)	159, 162, 311
HpyAV	CCTTC	2 cut(s)	436, 552
HpyCH4III	ACNGT	4 cut(s)	58, 101, 125, 703
HpyCH4IV	ACGT	4 cut(s)	33, 80, 306, 778
HpyCH4V	TGCA	4 cut(s)	342, 601, 782, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 233, 339, 719, 869
HpyF3I	CTNAG	6 cut(s)	255, 288, 407, 525, 636, 887
HpySE526I	ACGT	4 cut(s)	33, 80, 306, 778
Hsp92I	GRCGYC	3 cut(s)	69, 306, 574
Hsp92II	CATG	2 cut(s)	152, 810
HspAI	GCGC	2 cut(s)	69, 574
KasI	GGCGCC	2 cut(s)	68, 573
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	44, 420
LmnI	GCTCC	3 cut(s)	851, 928, 964
Lsp1109I	GCAGC	2 cut(s)	706, 809
LweI	GCATC	1 cut(s)	791
MaeII	ACGT	4 cut(s)	33, 80, 306, 778
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	46, 422
MboI	GATC	2 cut(s)	44, 420
MboII	GAAGA	4 cut(s)	95, 572, 763, 766
MhlI	GDGCHC	2 cut(s)	848, 933
MluCI	AATT	6 cut(s)	387, 495, 516, 676, 695, 894
Mly113I	GGCGCC	2 cut(s)	69, 574
MlyI	GAGTC	2 cut(s)	476, 989
MmeI	TCCRAC	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	4 cut(s)	351, 813, 822, 993
MspA1I	CMGCKG	2 cut(s)	191, 475
MspI	CCGG	3 cut(s)	141, 180, 284
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	83, 233, 339, 719, 869
NarI	GGCGCC	2 cut(s)	69, 574
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	2 cut(s)	44, 420
NlaIII	CATG	2 cut(s)	152, 810
NlaIV	GGNNCC	5 cut(s)	70, 127, 447, 575, 847
NmuCI	GTSAC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	170, 647
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	68, 279, 538, 721, 724, 799
PleI	GAGTC	2 cut(s)	476, 988
PluTI	GGCGCC	2 cut(s)	72, 577
PpsI	GAGTC	2 cut(s)	476, 988
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	70, 127, 447, 575, 847
PspPI	GGNCC	3 cut(s)	143, 185, 640
PvuII	CAGCTG	2 cut(s)	191, 475
RsaI	GTAC	3 cut(s)	127, 731, 953
RsaNI	GTAC	3 cut(s)	126, 730, 952
SaqAI	TTAA	4 cut(s)	351, 813, 822, 993
SatI	GCNGC	6 cut(s)	67, 278, 537, 720, 723, 798
Sau3AI	GATC	2 cut(s)	44, 420
Sau96I	GGNCC	3 cut(s)	143, 185, 640
SchI	GAGTC	2 cut(s)	476, 989
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	848, 933
SfaNI	GCATC	1 cut(s)	791
SfoI	GGCGCC	2 cut(s)	70, 575
SinI	GGWCC	2 cut(s)	143, 185
SmlI	CTYRAG	1 cut(s)	955
SmoI	CTYRAG	1 cut(s)	955
Sse9I	AATT	6 cut(s)	387, 495, 516, 676, 695, 894
SsiI	CCGC	6 cut(s)	66, 183, 278, 537, 722, 829
SspDI	GGCGCC	2 cut(s)	68, 573
SspI	AATATT	1 cut(s)	766
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	58, 101, 125, 703
TaiI	ACGT	4 cut(s)	36, 83, 309, 781
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	6 cut(s)	387, 495, 516, 676, 695, 894
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	4 cut(s)	69, 280, 539, 725
TfiI	GAWTC	2 cut(s)	170, 647
Tru1I	TTAA	4 cut(s)	351, 813, 822, 993
Tru9I	TTAA	4 cut(s)	351, 813, 822, 993
TscAI	CASTG	2 cut(s)	584, 708
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	719, 797
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	5 cut(s)	162, 339, 573, 789, 807
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	2 cut(s)	584, 708
VpaK11BI	GGWCC	2 cut(s)	143, 185
XapI	RAATTY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	10
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.