Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003258

Physical Location & Seq

Genomic Coordinates Reverse (-)

6773798 .. 6776075

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGAAGGATTAACGGAATCGCTTTGCTCGGCCGCACCGCCGCTGGTATTGGCGGCGCCACCAGAGTCAGCGGCGCAACTCCACAGCGACTGGTTCAAGCAGCGACGATAGGCTCGTGCTCGAATTCGAATCCGCTGTGGTTCAGTCGTCAAAGCTCCGGCGATCGCTTTGGCCTATCGAAACCCTCAGTGGCTGCCGGAGGCGCCAAGTGCTTCTCTACTTCCGTGGCTCAGGAGGTGCACTCCGATAAGTTCGCTCCGAACGACGTCGTTCTGTACCAGTACGAAGCCTGCCCTTTCTGCAACAAGGTTAGAGATATTATTGATAAGCTATTCCAAAGAATCAATCCTGAGAACAGTGTTGTCGATAGTGAGGAAGAAAAGAAGTGGCGCCAGTGGGTGGATGATCACTTGGTGCATGTTTTATCACCAAACATATATCGAACTCCTTCAGAAGCTCTTGAGTCATTTGATTATATAACCAGTCACGGGAATTTCAGTTTATCCGAAAGGCTAGTAGCCAAGTATGGTGGAGCTGCAGCAATGTATTTTGTATCAAAAAAATTGAAGAAGAGACACAATATCACCGATGCTCGTGCAGCTTTATATGGAGCTGCAGAGACTTGGGTGGATGCTCTGAAAGGCCGGCAGTTTCTTGGTGGGTCAACTCCTAACTTGGCTGATCTTGCTGTATTTGGTGTTTTGAGGCCGATTCGGCACCTTAAATCTGGCAAAGAAATGGTGGAGAACAGCCGAATCGGTGAATGGTATAGTCGAATGGAGAGTGCAGTGGGAGAGTCTGCTAGAATCGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0016829 GO:0020037 GO:0033218 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0046906 GO:0048037 GO:0072341 GO:0097159 GO:1900750 GO:1901363 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

GST_C GST_N_3

Protein Analysis

272

Amino Acids

29.87

Weight (kDa)

9.24

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42150
fragaria_vesca	FvH4_2g38150 FvH4_5g17390 FvH4_5g17390
malus_domestica	MD08G1010100.v1.1 MD14G1236600.v1.1
prunus_persica	Prupe.1G362400_v2.0.a1 Prupe.1G362400_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1 Prupe.5G233700_v2.0.a1
pyrus_communis	pycom06g20360 pycom08g00850 pycom14g19760
rosa_chinensis	RchiOBHm_Chr6g0303331 RchiOBHm_Chr7g0178351
rosa_laevigata	RLG00000005453 RLG00000011091
rosa_multiflora	Rmu_sc0014842.1_g000009 Rmu_sc0028437.1_g000002 Rmu_ssc0000114.1_g000063
rosa_roxburghii	Rroxscaffold_3G00274990 Rroxscaffold_7G00164860
rosa_rugosa	Rorug06G0320600 Rorug06G0320700 Rorug06G0416200
rosa_samantha	Rh6AG434900 Rh6BG468200 Rh6CG447000 Rh6DG433800 Rh7AG015000 Rh7BG014500 Rh7CG014500 Rh7DG014800
rosa_wichuraiana	Rw0G010210 Rw6G037660 Rw7G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccB1I	GGYRCC	4 cut(s)	56, 203, 390, 717
AccB7I	CCANNNNNTGG	1 cut(s)	400
AciI	CCGC	6 cut(s)	34, 39, 42, 54, 72, 134
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	124, 493
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	4 cut(s)	57, 204, 267, 391
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	278, 284
AfiI	CCNNNNNNNGG	2 cut(s)	400, 489
AgsI	TTSAA	2 cut(s)	98, 568
AluBI	AGCT	6 cut(s)	156, 331, 458, 536, 602, 614
AluI	AGCT	6 cut(s)	156, 331, 458, 536, 602, 614
Alw21I	GWGCWC	2 cut(s)	122, 243
Alw26I	GTCTC	2 cut(s)	568, 614
Alw44I	GTGCAC	1 cut(s)	239
AlwNI	CAGNNNCTG	2 cut(s)	91, 194
AoxI	GGCC	4 cut(s)	31, 172, 643, 707
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	6 cut(s)	101, 194, 536, 539, 599, 614
ApoI	RAATTY	2 cut(s)	124, 493
AsiSI	GCGATCGC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	59, 77, 206, 393
AsuHPI	GGTGA	3 cut(s)	420, 577, 773
AsuII	TTCGAA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	4 cut(s)	56, 203, 390, 717
BauI	CACGAG	2 cut(s)	115, 594
Bbv12I	GWGCWC	2 cut(s)	122, 243
BbvI	GCAGC	6 cut(s)	113, 181, 523, 551, 601, 611
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	568, 614
BfaI	CTAG	2 cut(s)	515, 804
BfmI	CTRYAG	2 cut(s)	537, 615
BfoI	RGCGCY	3 cut(s)	60, 207, 394
BglI	GCCNNNNNGGC	1 cut(s)	715
BmiI	GGNNCC	4 cut(s)	58, 205, 392, 719
BmsI	GCATC	3 cut(s)	580, 622, 802
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	810
BsaHI	GRCGYC	4 cut(s)	57, 204, 267, 391
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 489
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	4 cut(s)	96, 280, 394, 483
Bse3DI	GCAATG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	409, 637
BseLI	CCNNNNNNNGG	2 cut(s)	400, 489
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	201, 245, 342
BseNI	ACTGG	4 cut(s)	96, 280, 394, 483
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	6 cut(s)	113, 181, 523, 551, 601, 611
BsgI	GTGCAG	2 cut(s)	618, 807
Bsh1285I	CGRYCG	2 cut(s)	34, 166
BshFI	GGCC	4 cut(s)	33, 174, 645, 709
BshNI	GGYRCC	4 cut(s)	56, 203, 390, 717
BshVI	ATCGAT	1 cut(s)	810
BsiEI	CGRYCG	2 cut(s)	34, 166
BsiHKAI	GWGCWC	2 cut(s)	122, 243
BsiSI	CCGG	3 cut(s)	159, 198, 646
BslI	CCNNNNNNNGG	2 cut(s)	400, 489
BsmAI	GTCTC	2 cut(s)	568, 614
BsnI	GGCC	4 cut(s)	33, 174, 645, 709
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	122, 243
Bsp143I	GATC	3 cut(s)	163, 406, 682
BspACI	CCGC	6 cut(s)	34, 39, 42, 54, 72, 134
BspANI	GGCC	4 cut(s)	33, 174, 645, 709
BspCNI	CTCAG	3 cut(s)	200, 244, 343
BspDI	ATCGAT	1 cut(s)	810
BspLI	GGNNCC	4 cut(s)	58, 205, 392, 719
BspMAI	CTGCAG	2 cut(s)	541, 619
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	4 cut(s)	56, 203, 390, 717
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	645
BsrI	ACTGG	4 cut(s)	96, 280, 394, 483
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	163, 406, 682
BssNI	GRCGYC	4 cut(s)	57, 204, 267, 391
BssSI	CACGAG	2 cut(s)	115, 594
Bst2BI	CACGAG	2 cut(s)	115, 594
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	4 cut(s)	57, 204, 267, 391
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	292, 647
BstDEI	CTNAG	3 cut(s)	187, 231, 351
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	409, 637
BstH2I	RGCGCY	3 cut(s)	60, 207, 394
BstHHI	GCGC	4 cut(s)	59, 77, 206, 393
BstKTI	GATC	3 cut(s)	166, 409, 685
BstMAI	GTCTC	2 cut(s)	568, 614
BstMBI	GATC	3 cut(s)	163, 406, 682
BstMCI	CGRYCG	2 cut(s)	34, 166
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 210, 300, 599, 686, 715
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	2 cut(s)	537, 615
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	113, 181, 523, 551, 601, 611
BstZI	CGGCCG	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	810
BsuRI	GGCC	4 cut(s)	33, 174, 645, 709
BsuTUI	ATCGAT	1 cut(s)	810
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	409, 637
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	4 cut(s)	195, 364, 401, 795
Cac8I	GCNNGC	2 cut(s)	292, 647
CaiI	CAGNNNCTG	2 cut(s)	91, 194
CfoI	GCGC	4 cut(s)	59, 77, 206, 393
Cfr10I	RCCGGY	1 cut(s)	645
ClaI	ATCGAT	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	277, 283
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	2 cut(s)	277, 283
DdeI	CTNAG	3 cut(s)	187, 231, 351
DinI	GGCGCC	3 cut(s)	58, 205, 392
DpnI	GATC	3 cut(s)	165, 408, 684
DpnII	GATC	3 cut(s)	163, 406, 682
DraIII	CACNNNGTG	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	124
EgeI	GGCGCC	3 cut(s)	58, 205, 392
EheI	GGCGCC	3 cut(s)	58, 205, 392
FaeI	CATG	1 cut(s)	422
FaiI	YATR	9 cut(s)	420, 437, 439, 477, 479, 528, 607, 609, 771
FatI	CATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	2 cut(s)	416, 644
FspBI	CTAG	2 cut(s)	515, 804
GlaI	GCGC	4 cut(s)	58, 76, 205, 392
HaeII	RGCGCY	3 cut(s)	60, 207, 394
HaeIII	GGCC	4 cut(s)	33, 174, 645, 709
HapII	CCGG	3 cut(s)	159, 198, 646
HhaI	GCGC	4 cut(s)	59, 77, 206, 393
Hin1I	GRCGYC	4 cut(s)	57, 204, 267, 391
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	4 cut(s)	57, 75, 204, 391
HinP1I	GCGC	4 cut(s)	57, 75, 204, 391
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	9 cut(s)	18, 66, 130, 342, 464, 712, 756, 797, 807
HpaII	CCGG	3 cut(s)	159, 198, 646
HphI	GGTGA	3 cut(s)	420, 577, 773
Hpy166II	GTNNAC	2 cut(s)	241, 666
Hpy188I	TCNGA	5 cut(s)	247, 261, 454, 508, 639
Hpy188III	TCNNGA	3 cut(s)	233, 350, 461
Hpy8I	GTNNAC	2 cut(s)	241, 666
Hpy99I	CGWCG	3 cut(s)	109, 269, 272
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	7 cut(s)	241, 303, 418, 539, 599, 617, 788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 210, 300, 599, 686, 715
HpyF3I	CTNAG	3 cut(s)	187, 231, 351
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	4 cut(s)	57, 204, 267, 391
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	4 cut(s)	57, 75, 204, 391
KasI	GGCGCC	3 cut(s)	56, 203, 390
KroI	GCCGGC	1 cut(s)	645
KroNI	GCCGGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	163, 406, 682
LmnI	GCTCC	4 cut(s)	161, 262, 533, 611
Lsp1109I	GCAGC	6 cut(s)	113, 181, 523, 551, 601, 611
LweI	GCATC	3 cut(s)	580, 622, 802
MaeI	CTAG	2 cut(s)	515, 804
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	165, 408, 684
MboI	GATC	3 cut(s)	163, 406, 682
MboII	GAAGA	3 cut(s)	389, 580, 583
MhlI	GDGCHC	2 cut(s)	122, 243
MluCI	AATT	3 cut(s)	124, 493, 563
Mly113I	GGCGCC	3 cut(s)	57, 204, 391
MlyI	GAGTC	3 cut(s)	75, 473, 806
MnlI	CCTC	5 cut(s)	194, 196, 229, 367, 699
MroNI	GCCGGC	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	2 cut(s)	12, 723
MspA1I	CMGCKG	3 cut(s)	44, 72, 136
MspI	CCGG	3 cut(s)	159, 198, 646
MwoI	GCNNNNNNNGC	6 cut(s)	203, 210, 300, 599, 686, 715
NaeI	GCCGGC	1 cut(s)	647
NarI	GGCGCC	3 cut(s)	57, 204, 391
NdeII	GATC	3 cut(s)	163, 406, 682
NgoMIV	GCCGGC	1 cut(s)	645
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	4 cut(s)	58, 205, 392, 719
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	113, 261
PdiI	GCCGGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	6 cut(s)	18, 130, 342, 712, 756, 807
PflMI	CCANNNNNTGG	1 cut(s)	400
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	3 cut(s)	74, 472, 805
PluTI	GGCGCC	3 cut(s)	60, 207, 394
PpsI	GAGTC	3 cut(s)	74, 472, 805
PspN4I	GGNNCC	4 cut(s)	58, 205, 392, 719
PstI	CTGCAG	2 cut(s)	541, 619
PstNI	CAGNNNCTG	2 cut(s)	91, 194
PvuI	CGATCG	1 cut(s)	166
RgaI	GCGATCGC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	278, 284
RsaNI	GTAC	2 cut(s)	277, 283
SaqAI	TTAA	2 cut(s)	12, 723
Sau3AI	GATC	3 cut(s)	163, 406, 682
SchI	GAGTC	3 cut(s)	75, 473, 806
SduI	GDGCHC	2 cut(s)	122, 243
SfaAI	GCGATCGC	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	580, 622, 802
SfcI	CTRYAG	2 cut(s)	537, 615
SfoI	GGCGCC	3 cut(s)	58, 205, 392
SfuI	TTCGAA	1 cut(s)	128
SgfI	GCGATCGC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	124, 493, 563
SsiI	CCGC	6 cut(s)	34, 39, 42, 54, 72, 134
SspDI	GGCGCC	3 cut(s)	56, 203, 390
SspMI	CTAG	2 cut(s)	515, 804
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	7 cut(s)	122, 128, 179, 366, 442, 775, 810
TasI	AATT	3 cut(s)	124, 493, 563
TauI	GCSGC	4 cut(s)	36, 44, 57, 75
TfiI	GAWTC	6 cut(s)	18, 130, 342, 712, 756, 807
Tru1I	TTAA	2 cut(s)	12, 723
Tru9I	TTAA	2 cut(s)	12, 723
TscAI	CASTG	4 cut(s)	195, 364, 401, 795
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	6 cut(s)	101, 194, 536, 539, 599, 614
Tsp45I	GTSAC	1 cut(s)	485
TspGWI	ACGGA	2 cut(s)	30, 214
TspRI	CASTG	4 cut(s)	195, 364, 401, 795
Van91I	CCANNNNNTGG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	239
XapI	RAATTY	2 cut(s)	124, 493
XceI	RCATGY	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	2 cut(s)	515, 804
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.