AT5G42470

BRCA1-A complex subunit BRE-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007724
Physical Location & Seq
Forward (+)
16982149 .. 16984933
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42470.1

Sequence Viewer

Length: 1149 bp
ATGGCGTTCGAAGAATTCCCACCTCTAATCGCCGACCAGCTCCACTACTTACTCAATCACTCACCTGATTCCATCAAGATCGCAAACGTGTGGTCTGGTAACAAAATTAATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAATGGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAGACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGCTCCTGATGATGATCAGATATCATCACTGGAGAAGGCTTTGTCTGAGTGGGATCACGAGGACTCCACTCGGTTACTTGTTATCATTCAAGGATTGAGGGATCAATATGTGGCCTACCAAAGAAGGCGTGTGGGTCAAGTTGATGATGATCGAGTTAAGTTTGAGATTAGCACCGTCTTAACTCGCAAGGGAATTGAAATGCAAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGGATATGAACATAAACAAAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATCTTCAGGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTCAGCACCTCGTTTGAAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGGATGTTAAACTTTCTCCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAGAGACAGATCCATGAAGCTGTTGCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCATTAAGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTACCTTTTGCCGTAAGGCTACATTCCTTAATGCCTCTGGACAATTTACTTTCATGGTTCATTTCTTCTTTTCAACTCAATTTCCGAAGCAGCAACCAACTCTGATGCTGCAAAGTTGTCAGCATTTAAACCAATCGAGTGTGCCAGTGAAATCGAATCTCCTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGACGCATGGCTGAGCGACTGTGTGACTTCCTGACCGACGAGGCTGTCAACTTTAAAAAATATTGTAACGAAGCTCTGCTCCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

382

Amino Acids

44.12

Weight (kDa)

5.23

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 24 - 330 2.3e-41 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1103
AccI GTMKAC 1 cut(s) 600
AclWI GGATC 6 cut(s) 197, 210, 327, 375, 769, 854
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 462, 575
AfaI GTAC 2 cut(s) 516, 1034
AfeI AGCGCT 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 356, 464, 649, 755, 854, 936
AluBI AGCT 3 cut(s) 40, 785, 1133
AluI AGCT 3 cut(s) 40, 785, 1133
Alw26I GTCTC 2 cut(s) 152, 763
AlwI GGATC 6 cut(s) 197, 210, 327, 375, 769, 854
Aor51HI AGCGCT 1 cut(s) 262
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 5 cut(s) 558, 626, 791, 952, 970
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 4 cut(s) 77, 109, 224, 256
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 54
AsuII TTCGAA 1 cut(s) 9
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 202
BauI CACGAG 2 cut(s) 137, 323
BbsI GAAGAC 1 cut(s) 850
BbvI GCAGC 5 cut(s) 545, 638, 778, 957, 964
BccI CCATC 5 cut(s) 80, 520, 709, 756, 1044
BceAI ACGGC 2 cut(s) 232, 858
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 152, 763
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 5 cut(s) 559, 627, 792, 953, 971
BlpI GCTNAGC 1 cut(s) 1071
BlsI GCNGC 5 cut(s) 560, 628, 793, 954, 972
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 2 cut(s) 580, 957
BpiI GAAGAC 1 cut(s) 850
BpmI CTGGAG 2 cut(s) 192, 317
Bpu1102I GCTNAGC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 2 cut(s) 279, 414
BsaJI CCNNGG 3 cut(s) 563, 710, 1037
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bse1I ACTGG 2 cut(s) 300, 1007
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 2 cut(s) 279, 414
BseDI CCNNGG 3 cut(s) 563, 710, 1037
BseGI GGATG 4 cut(s) 178, 700, 720, 729
BseJI GATNNNNATC 2 cut(s) 279, 414
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 3 cut(s) 303, 1020, 1062
BseNI ACTGG 2 cut(s) 300, 1007
BseRI GAGGAG 2 cut(s) 823, 1013
BseXI GCAGC 5 cut(s) 545, 638, 778, 957, 964
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 1074
BsmAI GTCTC 2 cut(s) 152, 763
BsmFI GGGAC 1 cut(s) 1074
BsnI GGCC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
Bsp1720I GCTNAGC 1 cut(s) 1071
Bsp19I CCATGG 2 cut(s) 710, 1037
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 3 cut(s) 304, 1021, 1063
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 6 cut(s) 197, 210, 327, 375, 769, 854
BspT104I TTCGAA 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 2 cut(s) 300, 1007
BssECI CCNNGG 3 cut(s) 563, 710, 1037
BssMI GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
BssNAI GTATAC 1 cut(s) 601
BssSI CACGAG 2 cut(s) 137, 323
BssT1I CCWWGG 3 cut(s) 563, 710, 1037
Bst1107I GTATAC 1 cut(s) 601
Bst2BI CACGAG 2 cut(s) 137, 323
Bst4CI ACNGT 4 cut(s) 152, 442, 633, 1080
BstBI TTCGAA 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 312, 1029, 1071
BstDSI CCRYGG 2 cut(s) 710, 1037
BstF5I GGATG 4 cut(s) 178, 700, 720, 729
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 9 cut(s) 81, 127, 205, 283, 322, 370, 418, 777, 862
BstMAI GTCTC 2 cut(s) 152, 763
BstMBI GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 635, 791
BstV1I GCAGC 5 cut(s) 545, 638, 778, 957, 964
BstV2I GAAGAC 1 cut(s) 850
BstX2I RGATCY 2 cut(s) 202, 774
BstYI RGATCY 2 cut(s) 202, 774
BstZ17I GTATAC 1 cut(s) 601
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 2 cut(s) 710, 1037
BtsCI GGATG 4 cut(s) 178, 700, 720, 729
BtsIMutI CAGTG 3 cut(s) 293, 1014, 1026
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 1071
Csp6I GTAC 2 cut(s) 515, 1033
CviAII CATG 5 cut(s) 711, 779, 916, 1038, 1066
CviQI GTAC 2 cut(s) 515, 1033
DdeI CTNAG 3 cut(s) 312, 1029, 1071
DpnI GATC 9 cut(s) 80, 126, 204, 282, 321, 369, 417, 776, 861
DpnII GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
DraI TTTAAA 3 cut(s) 672, 990, 1114
DrdI GACNNNNNNGTC 1 cut(s) 1103
DseDI GACNNNNNNGTC 1 cut(s) 1103
Eco130I CCWWGG 3 cut(s) 563, 710, 1037
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 262
Eco57I CTGAAG 2 cut(s) 462, 575
EcoRI GAATTC 1 cut(s) 14
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 3 cut(s) 563, 710, 1037
ErhI CCWWGG 3 cut(s) 563, 710, 1037
FaeI CATG 5 cut(s) 714, 782, 919, 1041, 1069
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 1074
FatI CATG 5 cut(s) 710, 778, 915, 1037, 1065
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 5 cut(s) 559, 627, 792, 953, 971
FokI GGATG 4 cut(s) 185, 707, 727, 736
Fsp4HI GCNGC 5 cut(s) 559, 627, 792, 953, 971
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 262
GluI GCNGC 5 cut(s) 559, 627, 792, 953, 971
GsuI CTGGAG 2 cut(s) 192, 317
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 1 cut(s) 380
HgaI GACGC 1 cut(s) 1071
HhaI GCGC 1 cut(s) 263
Hin1II CATG 5 cut(s) 714, 782, 919, 1041, 1069
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 2 cut(s) 487, 1108
HindII GTYRAC 2 cut(s) 487, 1108
HinfI GANTC 6 cut(s) 68, 118, 329, 607, 1018, 1042
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 3 cut(s) 487, 601, 1108
Hpy188I TCNGA 6 cut(s) 190, 285, 313, 615, 948, 966
Hpy8I GTNNAC 3 cut(s) 487, 601, 1108
Hpy99I CGWCG 2 cut(s) 236, 1100
HpyAV CCTTC 2 cut(s) 295, 384
HpyCH4III ACNGT 4 cut(s) 152, 442, 633, 1080
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 5 cut(s) 197, 469, 512, 794, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 791
HpyF3I CTNAG 3 cut(s) 312, 1029, 1071
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 5 cut(s) 714, 782, 919, 1041, 1069
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
LmnI GCTCC 3 cut(s) 45, 274, 1143
Lsp1109I GCAGC 5 cut(s) 545, 638, 778, 957, 964
LweI GCATC 2 cut(s) 580, 957
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 4 cut(s) 98, 339, 1082, 1124
MalI GATC 9 cut(s) 80, 126, 204, 282, 321, 369, 417, 776, 861
MboI GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
MboII GAAGA 9 cut(s) 23, 248, 581, 592, 602, 734, 767, 855, 919
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 2 cut(s) 202, 774
MluCI AATT 8 cut(s) 14, 105, 184, 459, 650, 795, 905, 941
MlyI GAGTC 2 cut(s) 323, 1051
MroXI GAANNNNTTC 1 cut(s) 741
MunI CAATTG 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 635, 791
NcoI CCATGG 2 cut(s) 710, 1037
NdeII GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
NlaIII CATG 5 cut(s) 714, 782, 919, 1041, 1069
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 1082
NspV TTCGAA 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 4 cut(s) 68, 118, 607, 1018
PkrI GCNGC 5 cut(s) 560, 628, 793, 954, 972
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 2 cut(s) 323, 1050
PpsI GAGTC 2 cut(s) 323, 1050
PshBI ATTAAT 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 2 cut(s) 202, 774
PvuI CGATCG 1 cut(s) 127
RsaI GTAC 2 cut(s) 516, 1034
RsaNI GTAC 2 cut(s) 515, 1033
SatI GCNGC 5 cut(s) 559, 627, 792, 953, 971
Sau3AI GATC 9 cut(s) 78, 124, 202, 280, 319, 367, 415, 774, 859
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 323, 1051
SfaNI GCATC 2 cut(s) 580, 957
SfuI TTCGAA 1 cut(s) 9
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 8 cut(s) 14, 105, 184, 459, 650, 795, 905, 941
SspI AATATT 1 cut(s) 1121
SspMI CTAG 1 cut(s) 155
StyI CCWWGG 3 cut(s) 563, 710, 1037
TaaI ACNGT 4 cut(s) 152, 442, 633, 1080
TaiI ACGT 1 cut(s) 90
TaqI TCGA 5 cut(s) 9, 123, 418, 998, 1016
TaqII GACCGA 1 cut(s) 1109
TasI AATT 8 cut(s) 14, 105, 184, 459, 650, 795, 905, 941
TfiI GAWTC 4 cut(s) 68, 118, 607, 1018
TscAI CASTG 3 cut(s) 300, 1014, 1033
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 5 cut(s) 558, 626, 791, 952, 970
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 5 cut(s) 548, 636, 795, 904, 911
TspRI CASTG 3 cut(s) 300, 1014, 1033
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.