Rroxscaffold_7G00165170

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007724
Physical Location & Seq
Forward (+)
7034186 .. 7040990
6805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165170.1

Sequence Viewer

Length: 1125 bp
ATGTCTTCAGAGAGCTCTCCTCCTCTGATTGCAGCTCAGCTCAATCACCTCGCTCTTCACTTCCCTCTTCTCGCTAAGATTGAGCCGAAGTGGTCTGGTAGCAAAGACTACAGCGGAGTTCTTGATCGGTTTACCTTGGCCATTTCCTACTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGACGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCCGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAAAAAATATGTTTCCACCCCATCAGCTCCTCGTTTGAAACTAAGACTCTTGAAAAACAGGTCAGCTGCACTTCATTCACGGGCGAATCTATTCAGTCTATACTATACAGCTGTAATTTTGAAATGTATCATAATTGTTAGTAAACTTTGTCTTGTTATCAAGGTCTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGGCAAGGATATTCTCCTCCCAACCTTTGTCATCTTTTTTCCTGGAATACAATGAAAATCCTCACCTAGATATTTATAATATCATCGATCGTTTATTCCTCTTTGTTTTTGCCAGGATTCTAAATTTTAAATCTTTTATGAACAGCAAATTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

374

Amino Acids

42.78

Weight (kDa)

8.44

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 37 - 321 3.1e-27 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 2 cut(s) 535, 543
AccII CGCG 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 467
AciI CCGC 4 cut(s) 114, 188, 406, 941
AclI AACGTT 1 cut(s) 869
AclWI GGATC 2 cut(s) 266, 839
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 4 cut(s) 413, 494, 1090, 1115
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 972
AgsI TTSAA 7 cut(s) 344, 398, 419, 634, 649, 718, 959
AjnI CCWGG 5 cut(s) 548, 900, 966, 1008, 1079
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 285, 309
AlwI GGATC 2 cut(s) 266, 839
Ama87I CYCGRG 1 cut(s) 539
Aor13HI TCCGGA 1 cut(s) 467
AoxI GGCC 2 cut(s) 138, 366
ApeKI GCWGC 4 cut(s) 32, 325, 662, 878
ApoI RAATTY 4 cut(s) 413, 494, 1090, 1115
Asp700I GAANNNNTTC 2 cut(s) 240, 686
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 540, 541
AsuHPI GGTGA 3 cut(s) 38, 278, 1022
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 3 cut(s) 507, 540, 548
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 535, 543
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 835
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 44, 337, 649, 865
BccI CCATC 1 cut(s) 625
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 5 cut(s) 550, 902, 968, 1010, 1081
BciVI GTATCC 1 cut(s) 204
BcnI CCSGG 2 cut(s) 540, 541
BcoDI GTCTC 2 cut(s) 285, 309
BfaI CTAG 4 cut(s) 155, 509, 875, 1034
BfmI CTRYAG 2 cut(s) 109, 948
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 4 cut(s) 33, 326, 663, 879
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 34, 327, 664, 880
Bme1390I CCNGG 7 cut(s) 540, 541, 550, 902, 968, 1010, 1081
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 537, 545
BmrFI CCNGG 7 cut(s) 540, 541, 550, 902, 968, 1010, 1081
BmsI GCATC 2 cut(s) 175, 444
BpiI GAAGAC 1 cut(s) 835
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 540, 541
Bsa29I ATCGAT 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 135, 539, 548, 966
BsaWI WCCGGW 2 cut(s) 208, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 972
Bse1I ACTGG 1 cut(s) 833
BseAI TCCGGA 1 cut(s) 467
BseBI CCWGG 5 cut(s) 550, 902, 968, 1010, 1081
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 4 cut(s) 135, 539, 548, 966
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 972
BseMII CTCAG 3 cut(s) 50, 341, 938
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 5 cut(s) 9, 12, 500, 615, 973
BseSI GKGCMC 3 cut(s) 507, 540, 548
BseXI GCAGC 4 cut(s) 44, 337, 649, 865
BsgI GTGCAG 2 cut(s) 189, 648
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 1057
BshFI GGCC 2 cut(s) 140, 368
BshNI GGYRCC 2 cut(s) 535, 543
BshVI ATCGAT 1 cut(s) 1053
BsiEI CGRYCG 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 3 cut(s) 209, 468, 540
BslI CCNNNNNNNGG 1 cut(s) 972
BsmAI GTCTC 2 cut(s) 285, 309
BsnI GGCC 2 cut(s) 140, 368
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 4 cut(s) 17, 507, 540, 548
Bsp13I TCCGGA 1 cut(s) 467
Bsp143I GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 114, 188, 406, 941
BspANI GGCC 2 cut(s) 140, 368
BspCNI CTCAG 3 cut(s) 49, 342, 937
BspDI ATCGAT 1 cut(s) 1053
BspEI TCCGGA 1 cut(s) 467
BspFNI CGCG 1 cut(s) 408
BspHI TCATGA 1 cut(s) 1121
BspLI GGNNCC 2 cut(s) 537, 545
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 266, 839
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 535, 543
BspTNI GGTCTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 4 cut(s) 135, 539, 548, 966
BssMI GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 5 cut(s) 550, 902, 968, 1010, 1081
Bst4CI ACNGT 2 cut(s) 152, 293
Bst6I CTCTTC 2 cut(s) 60, 72
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 5 cut(s) 36, 75, 350, 638, 924
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 6 cut(s) 127, 274, 358, 847, 852, 1057
BstMAI GTCTC 2 cut(s) 285, 309
BstMBI GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
BstMCI CGRYCG 1 cut(s) 1057
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 5 cut(s) 550, 902, 968, 1010, 1081
BstSCI CCNGG 7 cut(s) 538, 539, 548, 900, 966, 1008, 1079
BstSFI CTRYAG 2 cut(s) 109, 948
BstSLI GKGCMC 3 cut(s) 507, 540, 548
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 4 cut(s) 44, 337, 649, 865
BstV2I GAAGAC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu15I ATCGAT 1 cut(s) 1053
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 140, 368
BsuTUI ATCGAT 1 cut(s) 1053
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 507, 840
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 945
CciI TCATGA 1 cut(s) 1121
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 539
ClaI ATCGAT 1 cut(s) 1053
CviAII CATG 5 cut(s) 263, 286, 331, 364, 1122
DdeI CTNAG 5 cut(s) 36, 75, 350, 638, 924
DpnI GATC 6 cut(s) 126, 273, 357, 846, 851, 1056
DpnII GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
DraI TTTAAA 1 cut(s) 1096
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 60, 72
EarI CTCTTC 2 cut(s) 60, 72
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 5 cut(s) 548, 900, 966, 1008, 1079
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 5 cut(s) 266, 289, 334, 367, 1125
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 5 cut(s) 262, 285, 330, 363, 1121
Fnu4HI GCNGC 4 cut(s) 33, 326, 663, 879
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 33, 326, 663, 879
FspBI CTAG 4 cut(s) 155, 509, 875, 1034
GlaI GCGC 1 cut(s) 797
GluI GCNGC 4 cut(s) 33, 326, 663, 879
GsuI CTGGAG 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 2 cut(s) 140, 368
HapII CCGG 3 cut(s) 209, 468, 540
HhaI GCGC 1 cut(s) 798
Hin1II CATG 5 cut(s) 266, 289, 334, 367, 1125
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HinfI GANTC 3 cut(s) 642, 682, 1084
HpaII CCGG 3 cut(s) 209, 468, 540
HphI GGTGA 3 cut(s) 38, 278, 1022
Hpy166II GTNNAC 2 cut(s) 132, 740
Hpy188I TCNGA 6 cut(s) 10, 27, 198, 224, 276, 849
Hpy188III TCNNGA 9 cut(s) 122, 155, 344, 398, 440, 468, 646, 885, 1122
Hpy8I GTNNAC 2 cut(s) 132, 740
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 2 cut(s) 152, 293
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 8 cut(s) 32, 206, 262, 457, 500, 577, 665, 858
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 5 cut(s) 36, 75, 350, 638, 924
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 5 cut(s) 266, 289, 334, 367, 1125
HspAI GCGC 1 cut(s) 796
Kpn2I TCCGGA 1 cut(s) 467
Kzo9I GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 4 cut(s) 44, 337, 649, 865
LweI GCATC 2 cut(s) 175, 444
MaeI CTAG 4 cut(s) 155, 509, 875, 1034
MaeII ACGT 1 cut(s) 869
MalI GATC 6 cut(s) 126, 273, 357, 846, 851, 1056
MboI GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
MboII GAAGA 6 cut(s) 47, 59, 242, 281, 577, 840
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 4 cut(s) 17, 507, 540, 548
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 636
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 140
MroI TCCGGA 1 cut(s) 467
MroXI GAANNNNTTC 2 cut(s) 240, 686
MscI TGGCCA 1 cut(s) 140
MseI TTAA 3 cut(s) 779, 911, 1095
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 3 cut(s) 114, 662, 707
MspI CCGG 3 cut(s) 209, 468, 540
MspR9I CCNGG 7 cut(s) 540, 541, 550, 902, 968, 1010, 1081
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 5 cut(s) 550, 902, 968, 1010, 1081
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 2 cut(s) 540, 541
NdeII GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
NlaIII CATG 5 cut(s) 266, 289, 334, 367, 1125
NlaIV GGNNCC 2 cut(s) 537, 545
PagI TCATGA 1 cut(s) 1121
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 240, 686
PfeI GAWTC 2 cut(s) 682, 1084
PfoI TCCNGGA 1 cut(s) 1008
PkrI GCNGC 4 cut(s) 34, 327, 664, 880
Ple19I CGATCG 1 cut(s) 1057
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
PsiI TTATAA 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 869
Psp6I CCWGG 5 cut(s) 548, 900, 966, 1008, 1079
PspGI CCWGG 5 cut(s) 548, 900, 966, 1008, 1079
PspN4I GGNNCC 2 cut(s) 537, 545
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 271
PvuI CGATCG 1 cut(s) 1057
PvuII CAGCTG 2 cut(s) 662, 707
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 779, 911, 1095
SatI GCNGC 4 cut(s) 33, 326, 663, 879
Sau3AI GATC 6 cut(s) 124, 271, 355, 844, 849, 1054
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 636
ScrFI CCNGG 7 cut(s) 540, 541, 550, 902, 968, 1010, 1081
SduI GDGCHC 4 cut(s) 17, 507, 540, 548
SfaNI GCATC 2 cut(s) 175, 444
SfcI CTRYAG 2 cut(s) 109, 948
SinI GGWCC 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SsiI CCGC 4 cut(s) 114, 188, 406, 941
SspMI CTAG 4 cut(s) 155, 509, 875, 1034
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 7 cut(s) 538, 539, 548, 900, 966, 1008, 1079
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 152, 293
TaiI ACGT 1 cut(s) 872
TaqI TCGA 1 cut(s) 1053
TfiI GAWTC 2 cut(s) 682, 1084
Tru1I TTAA 3 cut(s) 779, 911, 1095
Tru9I TTAA 3 cut(s) 779, 911, 1095
TscAI CASTG 2 cut(s) 507, 840
TseI GCWGC 4 cut(s) 32, 325, 662, 878
TspDTI ATGAA 6 cut(s) 249, 302, 659, 896, 1035, 1121
TspMI CCCGGG 1 cut(s) 539
TspRI CASTG 2 cut(s) 507, 840
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 4 cut(s) 413, 494, 1090, 1115
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmaI CCCGGG 1 cut(s) 539
XmnI GAANNNNTTC 2 cut(s) 240, 686
XspI CTAG 4 cut(s) 155, 509, 875, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.