Rh6BG208800

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007724
Physical Location & Seq
Forward (+)
39322656 .. 39352577
29922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG208800.1

Sequence Viewer

Length: 642 bp
ATGGCAACACACAGGTTATCCTTATCCGGAGCTTGTCTTGTTGAGCATGCTTTGGTTTTGATTGTTTTTGACACTTCAGCAGCTGACTGGTTTGGTGATTCGTCTTCTACTTTGTCTAGCTCAACAGAAGTACTCTGTCTAGACTTTATCAAATGTGACTTTATCAAAGTTCTTGATCGGTTTACCTTGGCCATTTCCTGCTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCCGATATTATATTCGGACCTGAGGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCTCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACACAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTGTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

213

Amino Acids

24.26

Weight (kDa)

4.63

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 56 - 185 1.7e-18 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AccB1I GGYRCC 2 cut(s) 586, 594
AccII CGCG 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 26
AciI CCGC 2 cut(s) 239, 457
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 464, 545
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 3 cut(s) 395, 449, 470
AjnI CCWGG 1 cut(s) 599
AluBI AGCT 4 cut(s) 32, 83, 120, 379
AluI AGCT 4 cut(s) 32, 83, 120, 379
Alw26I GTCTC 2 cut(s) 336, 360
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 26
AoxI GGCC 2 cut(s) 189, 417
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 464, 545
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 591, 592
AsuHPI GGTGA 2 cut(s) 107, 329
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 3 cut(s) 558, 591, 599
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 2 cut(s) 586, 594
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 601
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 2 cut(s) 591, 592
BcoDI GTCTC 2 cut(s) 336, 360
BfaI CTAG 4 cut(s) 117, 140, 206, 560
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 3 cut(s) 591, 592, 601
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 588, 596
BmrFI CCNGG 3 cut(s) 591, 592, 601
BmsI GCATC 2 cut(s) 226, 495
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 532
BpuMI CCSGG 2 cut(s) 591, 592
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 186, 590, 599
BsaWI WCCGGW 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 26
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 3 cut(s) 186, 590, 599
BseGI GGATG 2 cut(s) 229, 289
BseMII CTCAG 2 cut(s) 270, 392
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 551
BseSI GKGCMC 3 cut(s) 558, 591, 599
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 2 cut(s) 191, 419
BshNI GGYRCC 2 cut(s) 586, 594
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 2 cut(s) 27, 591
BsmAI GTCTC 2 cut(s) 336, 360
BsnI GGCC 2 cut(s) 191, 419
Bso31I GGTCTC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 558, 591, 599
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 3 cut(s) 175, 322, 406
BspACI CCGC 2 cut(s) 239, 457
BspANI GGCC 2 cut(s) 191, 419
BspCNI CTCAG 2 cut(s) 271, 393
BspEI TCCGGA 1 cut(s) 26
BspFNI CGCG 1 cut(s) 459
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 588, 596
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 2 cut(s) 586, 594
BspTNI GGTCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 186, 590, 599
BssMI GATC 3 cut(s) 175, 322, 406
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 601
Bst4CI ACNGT 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 279, 401
BstF5I GGATG 2 cut(s) 229, 289
BstFNI CGCG 1 cut(s) 459
BstKTI GATC 3 cut(s) 178, 325, 409
BstMAI GTCTC 2 cut(s) 336, 360
BstMBI GATC 3 cut(s) 175, 322, 406
BstNI CCWGG 1 cut(s) 601
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 589, 590, 599
BstSLI GKGCMC 3 cut(s) 558, 591, 599
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 279
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 191, 419
BtsCI GGATG 2 cut(s) 229, 289
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 275
Cfr9I CCCGGG 1 cut(s) 590
Csp6I GTAC 1 cut(s) 131
CviAII CATG 5 cut(s) 47, 314, 337, 382, 415
CviJI RGCY 7 cut(s) 32, 83, 120, 191, 379, 419, 532
CviKI_1 RGCY 7 cut(s) 32, 83, 120, 191, 379, 419, 532
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 279, 401
DpnI GATC 3 cut(s) 177, 324, 408
DpnII GATC 3 cut(s) 175, 322, 406
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 60
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 50, 317, 340, 385, 418
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 5 cut(s) 46, 313, 336, 381, 414
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 236, 296
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 4 cut(s) 117, 140, 206, 560
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 191, 419
HapII CCGG 2 cut(s) 27, 591
Hin1II CATG 5 cut(s) 50, 317, 340, 385, 418
HinfI GANTC 1 cut(s) 98
HpaII CCGG 2 cut(s) 27, 591
HphI GGTGA 2 cut(s) 107, 329
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 249, 275, 327
Hpy188III TCNNGA 9 cut(s) 27, 140, 173, 206, 337, 395, 449, 491, 519
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 5 cut(s) 257, 313, 508, 551, 628
HpyF3I CTNAG 2 cut(s) 279, 401
Hsp92II CATG 5 cut(s) 50, 317, 340, 385, 418
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 3 cut(s) 175, 322, 406
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 226, 495
MaeI CTAG 4 cut(s) 117, 140, 206, 560
MaeIII GTNAC 1 cut(s) 155
MalI GATC 3 cut(s) 177, 324, 408
MboI GATC 3 cut(s) 175, 322, 406
MboII GAAGA 3 cut(s) 96, 332, 628
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 3 cut(s) 558, 591, 599
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 5 cut(s) 464, 471, 480, 498, 545
MluNI TGGCCA 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 274, 436, 487, 529, 532
Mox20I TGGCCA 1 cut(s) 191
MroI TCCGGA 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 27, 591
MspR9I CCNGG 3 cut(s) 591, 592, 601
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 601
MvnI CGCG 1 cut(s) 459
NciI CCSGG 2 cut(s) 591, 592
NdeII GATC 3 cut(s) 175, 322, 406
NlaIII CATG 5 cut(s) 50, 317, 340, 385, 418
NlaIV GGNNCC 2 cut(s) 588, 596
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 599
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 2 cut(s) 588, 596
PspPI GGNCC 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 175, 322, 406
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 591, 592, 601
SduI GDGCHC 3 cut(s) 558, 591, 599
SfaNI GCATC 2 cut(s) 226, 495
SinI GGWCC 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SphI GCATGC 1 cut(s) 50
Sse9I AATT 5 cut(s) 464, 471, 480, 498, 545
SsiI CCGC 2 cut(s) 239, 457
SspMI CTAG 4 cut(s) 117, 140, 206, 560
StyD4I CCNGG 3 cut(s) 589, 590, 599
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 344
TasI AATT 5 cut(s) 464, 471, 480, 498, 545
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 300, 353, 443
TspMI CCCGGG 1 cut(s) 590
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 464, 545
XbaI TCTAGA 2 cut(s) 139, 205
XceI RCATGY 1 cut(s) 50
XmaI CCCGGG 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 4 cut(s) 117, 140, 206, 560
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.