Rorug06G0318100

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007724
Physical Location & Seq
Forward (+)
47006215 .. 47007014
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0318100.1

Sequence Viewer

Length: 306 bp
ATGGTCATGTGGACGCGAGATTTGCTTCGGTTAGCTGGCGGAGGGTGTGTGGCTGCTCGTCGTGCGACTGGTCTGGATCGAGCGCAGAGTGTGCATGTGGAAGAGGTAGGCGGCGGTTGCCATCCAGTCGATGCAGGTGGTGGTGGTGTCCTGGCAGTTATTTGGGAAGACAATATGGTAGCTGATGCGCTTGCTAATTATGGTGTCACAAATGTTGGTGCTAGGTGGTGGGATTCTTTACCTACCTTCATTGCTGGACATTATGAAAAAGACTTATCGTCTGCTGTCTCTTATAGATTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

101

Amino Acids

10.81

Weight (kDa)

5.82

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AccII CGCG 1 cut(s) 16
AciI CCGC 3 cut(s) 39, 111, 114
AclWI GGATC 1 cut(s) 84
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 35, 182
AluI AGCT 2 cut(s) 35, 182
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 2 cut(s) 85, 190
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 2 cut(s) 54, 112
BlsI GCNGC 2 cut(s) 55, 113
Bme1390I CCNGG 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 121, 175
BpiI GAAGAC 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse1I ACTGG 2 cut(s) 73, 125
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 73, 125
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 39, 111, 114
BspFNI CGCG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 2 cut(s) 73, 125
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 37, 192
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 2 cut(s) 85, 190
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 22, 62, 91, 117
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 37, 192
CfoI GCGC 2 cut(s) 85, 190
CseI GACGC 1 cut(s) 22
CviAII CATG 2 cut(s) 7, 95
CviJI RGCY 3 cut(s) 35, 53, 182
CviKI_1 RGCY 3 cut(s) 35, 53, 182
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 10, 98
FaiI YATR 6 cut(s) 8, 96, 176, 201, 264, 294
FatI CATG 2 cut(s) 6, 94
Fnu4HI GCNGC 2 cut(s) 54, 112
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 54, 112
FspBI CTAG 1 cut(s) 222
GlaI GCGC 2 cut(s) 84, 189
GluI GCNGC 2 cut(s) 54, 112
HgaI GACGC 1 cut(s) 22
HhaI GCGC 2 cut(s) 85, 190
Hin1II CATG 2 cut(s) 10, 98
Hin6I GCGC 2 cut(s) 83, 188
HinP1I GCGC 2 cut(s) 83, 188
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 94, 134
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 62, 91, 117
Hsp92II CATG 2 cut(s) 10, 98
HspAI GCGC 2 cut(s) 83, 188
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 21, 54, 59, 120, 137, 138, 164, 240
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 121, 175
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 113, 179
MluCI AATT 1 cut(s) 196
MnlI CCTC 2 cut(s) 35, 97
MseI TTAA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 22, 62, 91, 117
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 10, 98
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 55, 113
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 304
SatI GCNGC 2 cut(s) 54, 112
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 152
SetI ASST 7 cut(s) 37, 108, 139, 184, 227, 244, 248
SfaNI GCATC 2 cut(s) 121, 175
Sse9I AATT 1 cut(s) 196
SsiI CCGC 3 cut(s) 39, 111, 114
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 150
TaqI TCGA 2 cut(s) 79, 129
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 238, 279
XceI RCATGY 1 cut(s) 98
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.